Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:55:50 (31320): wrapper (7.7.26015): starting
06:55:50 (31320): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:55:50] Arguments: --nthreads 8
[2025-06-03 06:55:50] Threads: 8
[2025-06-03 06:55:50] Checking for CVMFS
[2025-06-03 06:55:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:55:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:55:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:55:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:55:52] 2.11.2.0 29611 31303 95928 146729 1 59 12949489 25165825 4635 130560 0 15537685 99.833 17711654 2174 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:55:52] CVMFS is ok
[2025-06-03 06:55:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:55:52] Checking for apptainer binary...
[2025-06-03 06:55:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:55:52] Running /usr/bin/apptainer --version
[2025-06-03 06:55:53] apptainer version 1.3.2-1.el7
[2025-06-03 06:55:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:56:06] cg-vwn406.simple-grid.lan
[2025-06-03 06:56:06] apptainer works
[2025-06-03 06:56:06] Set ATHENA_PROC_NUMBER=8
[2025-06-03 06:56:06] Set ATHENA_CORE_NUMBER=8
[2025-06-03 06:56:06] Starting ATLAS job with PandaID=6677392167
[2025-06-03 06:56:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:02:19]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:02:19] 2025-06-03 08:45:35,510 | INFO     | extracted standard info from prmon json
[2025-06-03 11:02:19] 2025-06-03 08:45:35,510 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:02:19] 2025-06-03 08:45:35,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:02:19] 2025-06-03 08:45:35,511 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:02:19] 2025-06-03 08:45:35,511 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:02:19] 2025-06-03 08:45:35,516 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:02:19] 2025-06-03 08:45:35,516 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,518 | INFO     | sum of deviations: 27582285819.999992
[2025-06-03 11:02:19] 2025-06-03 08:45:35,519 | INFO     | mean x: 1748933758.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,519 | INFO     | mean y: 2491106.5258215964
[2025-06-03 11:02:19] 2025-06-03 08:45:35,519 | INFO     | -- intersect: -16096399652.204288
[2025-06-03 11:02:19] 2025-06-03 08:45:35,519 | INFO     | intersect: -16096399652.204288
[2025-06-03 11:02:19] 2025-06-03 08:45:35,519 | INFO     | chi2: 7.318939595393358
[2025-06-03 11:02:19] 2025-06-03 08:45:35,520 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,522 | INFO     | sum of deviations: 41746199943.499985
[2025-06-03 11:02:19] 2025-06-03 08:45:35,522 | INFO     | mean x: 1748933605.5
[2025-06-03 11:02:19] 2025-06-03 08:45:35,522 | INFO     | mean y: 2501389.581730769
[2025-06-03 11:02:19] 2025-06-03 08:45:35,522 | INFO     | -- intersect: -26163169892.007774
[2025-06-03 11:02:19] 2025-06-03 08:45:35,522 | INFO     | intersect: -26163169892.007774
[2025-06-03 11:02:19] 2025-06-03 08:45:35,522 | INFO     | chi2: 6.622924577529019
[2025-06-03 11:02:19] 2025-06-03 08:45:35,523 | INFO     | current chi2=6.622924577529019 (change=9.509779508255825 %)
[2025-06-03 11:02:19] 2025-06-03 08:45:35,523 | INFO     | right removable region: 207
[2025-06-03 11:02:19] 2025-06-03 08:45:35,523 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,525 | INFO     | sum of deviations: -47816535521.5
[2025-06-03 11:02:19] 2025-06-03 08:45:35,525 | INFO     | mean x: 1748933910.5
[2025-06-03 11:02:19] 2025-06-03 08:45:35,525 | INFO     | mean y: 2546843.389423077
[2025-06-03 11:02:19] 2025-06-03 08:45:35,525 | INFO     | -- intersect: 29972986552.01398
[2025-06-03 11:02:19] 2025-06-03 08:45:35,525 | INFO     | intersect: 29972986552.01398
[2025-06-03 11:02:19] 2025-06-03 08:45:35,526 | INFO     | chi2: 2.3467091203411075
[2025-06-03 11:02:19] 2025-06-03 08:45:35,526 | INFO     | current chi2=2.3467091203411075 (change=67.93648738653127 %)
[2025-06-03 11:02:19] 2025-06-03 08:45:35,526 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,528 | INFO     | sum of deviations: -83187690613.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,528 | INFO     | mean x: 1748934063.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,528 | INFO     | mean y: 2574124.699507389
[2025-06-03 11:02:19] 2025-06-03 08:45:35,528 | INFO     | -- intersect: 56091420230.443275
[2025-06-03 11:02:19] 2025-06-03 08:45:35,529 | INFO     | intersect: 56091420230.443275
[2025-06-03 11:02:19] 2025-06-03 08:45:35,529 | INFO     | chi2: 0.9989130988333184
[2025-06-03 11:02:19] 2025-06-03 08:45:35,529 | INFO     | current chi2=0.9989130988333184 (change=57.43345052120815 %)
[2025-06-03 11:02:19] 2025-06-03 08:45:35,530 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 11:02:19] 2025-06-03 08:45:35,531 | INFO     | sum of deviations: -81268819499.5
[2025-06-03 11:02:19] 2025-06-03 08:45:35,531 | INFO     | mean x: 1748934215.5
[2025-06-03 11:02:19] 2025-06-03 08:45:35,531 | INFO     | mean y: 2572526.6818181816
[2025-06-03 11:02:19] 2025-06-03 08:45:35,531 | INFO     | -- intersect: 59054558605.20226
[2025-06-03 11:02:19] 2025-06-03 08:45:35,532 | INFO     | intersect: 59054558605.20226
[2025-06-03 11:02:19] 2025-06-03 08:45:35,532 | INFO     | chi2: 0.9822437954081847
[2025-06-03 11:02:19] 2025-06-03 08:45:35,532 | INFO     | current chi2=0.9822437954081847 (change=1.668744102425181 %)
[2025-06-03 11:02:19] 2025-06-03 08:45:35,532 | INFO     | left removable region: 30
[2025-06-03 11:02:19] 2025-06-03 08:45:35,533 | INFO     | sum of square deviations: 1719429448.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,534 | INFO     | sum of deviations: -50995724097.00001
[2025-06-03 11:02:19] 2025-06-03 08:45:35,534 | INFO     | mean x: 1748934490.0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,534 | INFO     | mean y: 2572468.3898305083
[2025-06-03 11:02:19] 2025-06-03 08:45:35,534 | INFO     | -- intersect: 51873372296.50085
[2025-06-03 11:02:19] 2025-06-03 08:45:35,534 | INFO     | intersect: 51873372296.50085
[2025-06-03 11:02:19] 2025-06-03 08:45:35,535 | INFO     | chi2: 0.18708560889157821
[2025-06-03 11:02:19] 2025-06-03 08:45:35,535 | INFO     | -- intersect: 51873372296.50085
[2025-06-03 11:02:19] 2025-06-03 08:45:35,535 | INFO     | current memory leak: -29.66 B/s (using 177 data points, chi2=0.19)
[2025-06-03 11:02:19] 2025-06-03 08:45:35,536 | INFO     | ..............................
[2025-06-03 11:02:19] 2025-06-03 08:45:35,536 | INFO     | . Timing measurements:
[2025-06-03 11:02:19] 2025-06-03 08:45:35,536 | INFO     | . get job = 0 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,536 | INFO     | . initial setup = 8 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,537 | INFO     | . payload setup = 166 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,537 | INFO     | . stage-in = 0 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,537 | INFO     | . payload execution = 13096 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,537 | INFO     | . stage-out = 3 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,537 | INFO     | . log creation = 0 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,537 | INFO     | ..............................
[2025-06-03 11:02:19] 2025-06-03 08:45:35,648 | INFO     | 
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | job summary report
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | --------------------------------------------------
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | PanDA job id: 6677392167
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | task id: 45006595
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | errors: (none)
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | pilot state: finished 
[2025-06-03 11:02:19] 2025-06-03 08:45:35,649 | INFO     | transexitcode: 0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | exeerrorcode: 0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | exeerrordiag: 
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | exitcode: 0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | exitmsg: OK
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | cpuconsumptiontime: 48755 s
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | nevents: 400
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | neventsw: 0
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | pid: 17313
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | pgrp: 17313
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | corecount: 8
[2025-06-03 11:02:19] 2025-06-03 08:45:35,650 | INFO     | event service: False
[2025-06-03 11:02:19] 2025-06-03 08:45:35,651 | INFO     | sizes: {0: 2404347, 1: 2405032, 2: 2405231, 13: 2405231, 24: 2405287, 35: 2405315, 45: 2405471, 56: 2405499, 67: 2405527, 78: 2405555, 88: 2405757, 89: 2406125, 99
[2025-06-03 11:02:19] 2025-06-03 08:45:35,651 | INFO     | --------------------------------------------------
[2025-06-03 11:02:19] 2025-06-03 08:45:35,651 | INFO     | 
[2025-06-03 11:02:19] 2025-06-03 08:45:35,651 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-03 11:02:19] 2025-06-03 08:45:36,180 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,180 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,180 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | job 6677392167 has completed (purged errors)
[2025-06-03 11:02:19] 2025-06-03 08:45:36,182 | INFO     | overall cleanup function is called
[2025-06-03 11:02:19] 2025-06-03 08:45:37,191 | INFO     | --- collectZombieJob: --- 10, [17313]
[2025-06-03 11:02:19] 2025-06-03 08:45:37,192 | INFO     | zombie collector waiting for pid 17313
[2025-06-03 11:02:19] 2025-06-03 08:45:37,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:02:19] 2025-06-03 08:45:37,192 | INFO     | collected zombie processes
[2025-06-03 11:02:19] 2025-06-03 08:45:37,192 | INFO     | will attempt to kill all subprocesses of pid=17313
[2025-06-03 11:02:19] 2025-06-03 08:45:37,315 | INFO     | process IDs to be killed: [17313] (in reverse order)
[2025-06-03 11:02:19] 2025-06-03 08:45:38,165 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:02:19] 2025-06-03 08:45:38,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:02:19] 2025-06-03 08:45:38,169 | INFO     | did not find any defunct processes belonging to 17313
[2025-06-03 11:02:19] 2025-06-03 08:45:38,172 | INFO     | did not find any defunct processes belonging to 17313
[2025-06-03 11:02:19] 2025-06-03 08:45:38,173 | INFO     | ready for new job
[2025-06-03 11:02:19] 2025-06-03 08:45:38,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:02:19] 2025-06-03 08:45:38,175 | INFO     | **************************************
[2025-06-03 11:02:19] 2025-06-03 08:45:38,175 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:02:19] 2025-06-03 08:45:38,175 | INFO     | **************************************
[2025-06-03 11:02:19] 2025-06-03 08:45:38,175 | INFO     | 
[2025-06-03 11:02:19] 2025-06-03 08:45:38,176 | INFO     | pilot is running in a VM
[2025-06-03 11:02:19] 2025-06-03 08:45:38,176 | INFO     | architecture information:
[2025-06-03 11:02:19] 2025-06-03 08:45:38,191 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:02:19] 2025-06-03 08:45:38,418 | INFO     | cat /etc/os-release:
[2025-06-03 11:02:19] NAME="CentOS Linux"
[2025-06-03 11:02:19] VERSION="7 (Core)"
[2025-06-03 11:02:19] ID="centos"
[2025-06-03 11:02:19] ID_LIKE="rhel fedora"
[2025-06-03 11:02:19] VERSION_ID="7"
[2025-06-03 11:02:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:02:19] ANSI_COLOR="0;31"
[2025-06-03 11:02:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:02:19] HOME_URL="https://www.centos.org/"
[2025-06-03 11:02:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:02:19] 
[2025-06-03 11:02:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:02:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:02:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:02:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:02:19] 
[2025-06-03 11:02:19] 2025-06-03 08:45:38,419 | INFO     | **************************************
[2025-06-03 11:02:19] 2025-06-03 08:45:38,923 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-03 11:02:19] 2025-06-03 08:45:39,137 | INFO     | sufficient remaining disk space (496507027456 B)
[2025-06-03 11:02:19] 2025-06-03 08:45:39,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:02:19] 2025-06-03 08:45:39,138 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:02:19] 2025-06-03 08:45:39,138 | INFO     | update_server=False
[2025-06-03 11:02:19] 2025-06-03 08:45:39,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:02:19] 2025-06-03 08:45:39,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:02:19] 2025-06-03 08:45:39,139 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:02:19] 2025-06-03 08:45:39,140 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:02:19] 2025-06-03 08:45:39,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:02:19] 2025-06-03 08:45:39,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:02:19] 2025-06-03 08:45:39,531 | INFO     | all job control threads have been joined
[2025-06-03 11:02:19] 2025-06-03 08:45:39,600 | INFO     | all data control threads have been joined
[2025-06-03 11:02:19] 2025-06-03 08:45:39,634 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:02:19] 2025-06-03 08:45:39,951 | INFO     | all payload control threads have been joined
[2025-06-03 11:02:19] 2025-06-03 08:45:40,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:02:19] 2025-06-03 08:45:40,028 | INFO     | aborting loop
[2025-06-03 11:02:19] 2025-06-03 08:45:40,145 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:40,177 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:40,330 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:40,538 | INFO     | [job] control thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:40,607 | INFO     | [data] control thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:40,662 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:02:19] 2025-06-03 08:45:40,874 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:40,958 | INFO     | [payload] control thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:40,980 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:41,034 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:41,146 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:41,187 | INFO     | [job] validate thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:41,200 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:41,581 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:41,620 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:41,668 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:43,643 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:02:19] 2025-06-03 08:45:45,473 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620787394368)>', '<ExcThread(monitor, started 140620333029120)>']
[2025-06-03 11:02:19] 2025-06-03 08:45:46,181 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:02:19] 2025-06-03 08:45:46,182 | INFO     | [monitor] control thread has ended
[2025-06-03 11:02:19] 2025-06-03 08:45:50,498 | INFO     | all workflow threads have been joined
[2025-06-03 11:02:19] 2025-06-03 08:45:50,499 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:02:19] 2025-06-03 08:45:50,499 | INFO     | traces error code: 0
[2025-06-03 11:02:19] 2025-06-03 08:45:50,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:02:19] 2025-06-03 08:45:50,915 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:02:19] 2025-06-03 08:45:51,027 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:02:19] 2025-06-03 08:45:51,073 [wrapper] pilotpid: 4697
[2025-06-03 11:02:19] 2025-06-03 08:45:51,121 [wrapper] Pilot exit status: 0
[2025-06-03 11:02:19] 2025-06-03 08:45:51,451 [wrapper] pandaids: 6677392167
[2025-06-03 11:02:19] 2025-06-03 08:45:52,524 [wrapper] cleanup supervisor_pilot 25704 4698
[2025-06-03 11:02:19] 2025-06-03 08:45:52,639 [wrapper] Test setup, not cleaning
[2025-06-03 11:02:19] 2025-06-03 08:45:52,731 [wrapper] apfmon messages muted
[2025-06-03 11:02:19] 2025-06-03 08:45:52,831 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:02:19] 2025-06-03 08:45:52,912 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:02:19]  *** Error codes and diagnostics ***
[2025-06-03 11:02:19]     "exeErrorCode": 0,
[2025-06-03 11:02:19]     "exeErrorDiag": "",
[2025-06-03 11:02:19]     "pilotErrorCode": 0,
[2025-06-03 11:02:19]     "pilotErrorDiag": "",
[2025-06-03 11:02:19]  *** Listing of results directory ***
[2025-06-03 11:02:19] total 390440
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:30 pilot3.tar.gz
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:34 queuedata.json
[2025-06-03 11:02:19] -rwx------. 1 boinc boinc     37140 Jun  2 20:36 runpilot2-wrapper.sh
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:02:19] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:55 run_atlas
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:55 job.xml
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc      6392 Jun  3 06:55 init_data.xml
[2025-06-03 11:02:19] -rw-r--r--. 2 boinc boinc 215460851 Jun  3 06:55 EVNT.45006593._000307.pool.root.1
[2025-06-03 11:02:19] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:55 start_atlas.sh
[2025-06-03 11:02:19] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:55 shared
[2025-06-03 11:02:19] -rw-r--r--. 2 boinc boinc    508881 Jun  3 06:55 input.tar.gz
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:55 boinc_lockfile
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc      2520 Jun  3 06:56 pandaJob.out
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc    988073 Jun  3 06:59 agis_schedconf.cvmfs.json
[2025-06-03 11:02:19] drwx------. 4 boinc boinc      4096 Jun  3 06:59 pilot3
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc 177477861 Jun  3 10:42 HITS.45006595._007655.pool.root.1
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc       531 Jun  3 10:43 boinc_task_state.xml
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc      1016 Jun  3 10:43 memory_monitor_summary.json
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc   1603667 Jun  3 10:43 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc    367131 Jun  3 10:43 log.45006595._007655.job.log.tgz.1
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc        95 Jun  3 10:45 pilot_heartbeat.json
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc      7689 Jun  3 10:45 heartbeat.json
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc      4539 Jun  3 10:45 pilotlog.txt
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc   1154863 Jun  3 10:45 log.45006595._007655.job.log.1
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc       357 Jun  3 10:45 output.list
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc       620 Jun  3 10:45 runtime_log
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc   1546240 Jun  3 10:45 result.tar.gz
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc       656 Jun  3 10:45 VWIKDmXCPg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmREWKDmAcAuNn.diag
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc      8659 Jun  3 10:45 runtime_log.err
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:02 boinc_mmap_file
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:02 wrapper_checkpoint.txt
[2025-06-03 11:02:19] -rw-r--r--. 1 boinc boinc     20507 Jun  3 11:02 stderr.txt
[2025-06-03 11:02:19] HITS file was successfully produced:
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc 177477861 Jun  3 10:42 shared/HITS.pool.root.1
[2025-06-03 11:02:19]  *** Contents of shared directory: ***
[2025-06-03 11:02:19] total 385760
[2025-06-03 11:02:19] -rw-r--r--. 2 boinc boinc 215460851 Jun  3 06:55 ATLAS.root_0
[2025-06-03 11:02:19] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:55 start_atlas.sh
[2025-06-03 11:02:19] -rw-r--r--. 2 boinc boinc    508881 Jun  3 06:55 input.tar.gz
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc 177477861 Jun  3 10:42 HITS.pool.root.1
[2025-06-03 11:02:19] -rw-------. 1 boinc boinc   1546240 Jun  3 10:45 result.tar.gz
11:02:21 (31320): run_atlas exited; CPU time 48929.307938
11:02:21 (31320): called boinc_finish(0)

</stderr_txt>
]]>

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