Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:01:08 (2921): wrapper (7.7.26015): starting
07:01:08 (2921): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:01:08] Arguments: --nthreads 8
[2025-06-03 07:01:08] Threads: 8
[2025-06-03 07:01:08] Checking for CVMFS
[2025-06-03 07:01:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:01:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:01:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:01:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:01:10] 2.11.2.0 16647 31487 98436 146729 1 59 14932700 25165824 4632 130560 0 16449159 99.753 19827942 5164 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 07:01:10] CVMFS is ok
[2025-06-03 07:01:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:01:10] Checking for apptainer binary...
[2025-06-03 07:01:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:01:10] Running /usr/bin/apptainer --version
[2025-06-03 07:01:10] apptainer version 1.3.2-1.el7
[2025-06-03 07:01:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:01:16] cg-vwn490.simple-grid.lan
[2025-06-03 07:01:16] apptainer works
[2025-06-03 07:01:16] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:01:16] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:01:16] Starting ATLAS job with PandaID=6677391747
[2025-06-03 07:01:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:11:11]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:11:11] 2025-06-03 08:46:34,107 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:11:11] 2025-06-03 08:46:34,107 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:11:11] 2025-06-03 08:46:34,107 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:11:11] 2025-06-03 08:46:34,112 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:11:11] 2025-06-03 08:46:34,112 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,114 | INFO     | sum of deviations: 27124354671.99996
[2025-06-03 11:11:11] 2025-06-03 08:46:34,114 | INFO     | mean x: 1748933902.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,114 | INFO     | mean y: 2477832.961722488
[2025-06-03 11:11:11] 2025-06-03 08:46:34,114 | INFO     | -- intersect: -16755648923.990015
[2025-06-03 11:11:11] 2025-06-03 08:46:34,115 | INFO     | intersect: -16755648923.990015
[2025-06-03 11:11:11] 2025-06-03 08:46:34,115 | INFO     | chi2: 7.11361685007075
[2025-06-03 11:11:11] 2025-06-03 08:46:34,115 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,117 | INFO     | sum of deviations: 41190838650.000015
[2025-06-03 11:11:11] 2025-06-03 08:46:34,117 | INFO     | mean x: 1748933749.5
[2025-06-03 11:11:11] 2025-06-03 08:46:34,117 | INFO     | mean y: 2488438.588235294
[2025-06-03 11:11:11] 2025-06-03 08:46:34,117 | INFO     | -- intersect: -27363774944.451668
[2025-06-03 11:11:11] 2025-06-03 08:46:34,117 | INFO     | intersect: -27363774944.451668
[2025-06-03 11:11:11] 2025-06-03 08:46:34,118 | INFO     | chi2: 6.38254154357592
[2025-06-03 11:11:11] 2025-06-03 08:46:34,118 | INFO     | current chi2=6.38254154357592 (change=10.277125151708994 %)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,124 | INFO     | right removable region: 203
[2025-06-03 11:11:11] 2025-06-03 08:46:34,125 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,126 | INFO     | sum of deviations: -45296537956.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,127 | INFO     | mean x: 1748934054.5
[2025-06-03 11:11:11] 2025-06-03 08:46:34,127 | INFO     | mean y: 2533456.4901960786
[2025-06-03 11:11:11] 2025-06-03 08:46:34,127 | INFO     | -- intersect: 30096536027.120518
[2025-06-03 11:11:11] 2025-06-03 08:46:34,127 | INFO     | intersect: 30096536027.120518
[2025-06-03 11:11:11] 2025-06-03 08:46:34,127 | INFO     | chi2: 2.303219424056258
[2025-06-03 11:11:11] 2025-06-03 08:46:34,127 | INFO     | current chi2=2.303219424056258 (change=67.6223857342928 %)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,128 | INFO     | sum of square deviations: 2443580700.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,129 | INFO     | sum of deviations: -77571176674.00002
[2025-06-03 11:11:11] 2025-06-03 08:46:34,136 | INFO     | mean x: 1748934207.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,137 | INFO     | mean y: 2559317.2110552764
[2025-06-03 11:11:11] 2025-06-03 08:46:34,137 | INFO     | -- intersect: 55522266263.00544
[2025-06-03 11:11:11] 2025-06-03 08:46:34,137 | INFO     | intersect: 55522266263.00544
[2025-06-03 11:11:11] 2025-06-03 08:46:34,137 | INFO     | chi2: 1.051670871269296
[2025-06-03 11:11:11] 2025-06-03 08:46:34,137 | INFO     | current chi2=1.051670871269296 (change=54.339093345384704 %)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,138 | INFO     | sum of square deviations: 2263977332.5
[2025-06-03 11:11:11] 2025-06-03 08:46:34,139 | INFO     | sum of deviations: -76860838719.5
[2025-06-03 11:11:11] 2025-06-03 08:46:34,139 | INFO     | mean x: 1748934359.5
[2025-06-03 11:11:11] 2025-06-03 08:46:34,139 | INFO     | mean y: 2558668.5206185565
[2025-06-03 11:11:11] 2025-06-03 08:46:34,139 | INFO     | -- intersect: 59377959564.466446
[2025-06-03 11:11:11] 2025-06-03 08:46:34,140 | INFO     | intersect: 59377959564.466446
[2025-06-03 11:11:11] 2025-06-03 08:46:34,140 | INFO     | chi2: 1.0252884197245928
[2025-06-03 11:11:11] 2025-06-03 08:46:34,140 | INFO     | current chi2=1.0252884197245928 (change=2.5086224469506555 %)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,140 | INFO     | left removable region: 30
[2025-06-03 11:11:11] 2025-06-03 08:46:34,140 | INFO     | sum of square deviations: 1605470102.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,142 | INFO     | sum of deviations: -44920635765.00001
[2025-06-03 11:11:11] 2025-06-03 08:46:34,142 | INFO     | mean x: 1748934634.0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,142 | INFO     | mean y: 2556448.7803468206
[2025-06-03 11:11:11] 2025-06-03 08:46:34,142 | INFO     | -- intersect: 48937292494.52678
[2025-06-03 11:11:11] 2025-06-03 08:46:34,142 | INFO     | intersect: 48937292494.52678
[2025-06-03 11:11:11] 2025-06-03 08:46:34,143 | INFO     | chi2: 0.18821641575769565
[2025-06-03 11:11:11] 2025-06-03 08:46:34,143 | INFO     | -- intersect: 48937292494.52678
[2025-06-03 11:11:11] 2025-06-03 08:46:34,143 | INFO     | current memory leak: -27.98 B/s (using 173 data points, chi2=0.19)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | ..............................
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . Timing measurements:
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . get job = 0 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . initial setup = 6 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . payload setup = 147 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . stage-in = 0 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . payload execution = 12898 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . stage-out = 3 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | . log creation = 0 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,144 | INFO     | ..............................
[2025-06-03 11:11:11] 2025-06-03 08:46:34,287 | INFO     | 
[2025-06-03 11:11:11] 2025-06-03 08:46:34,287 | INFO     | job summary report
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | --------------------------------------------------
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | PanDA job id: 6677391747
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | task id: 45006595
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | errors: (none)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | pilot state: finished 
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | transexitcode: 0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | exeerrorcode: 0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | exeerrordiag: 
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | exitcode: 0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,288 | INFO     | exitmsg: OK
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | cpuconsumptiontime: 44952 s
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | nevents: 400
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | neventsw: 0
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | pid: 19268
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | pgrp: 19268
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | corecount: 8
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | event service: False
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | sizes: {0: 2405006, 1: 2405205, 11: 2405205, 22: 2405233, 33: 2405261, 44: 2405317, 54: 2405473, 65: 2405501, 76: 2405529, 87: 2405585, 90: 2405819, 97: 2406127, 1
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | --------------------------------------------------
[2025-06-03 11:11:11] 2025-06-03 08:46:34,289 | INFO     | 
[2025-06-03 11:11:11] 2025-06-03 08:46:34,290 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 11:11:11] 2025-06-03 08:46:34,885 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,885 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:11:11] 2025-06-03 08:46:34,887 | INFO     | job 6677391747 has completed (purged errors)
[2025-06-03 11:11:11] 2025-06-03 08:46:34,887 | INFO     | overall cleanup function is called
[2025-06-03 11:11:11] 2025-06-03 08:46:35,895 | INFO     | --- collectZombieJob: --- 10, [19268]
[2025-06-03 11:11:11] 2025-06-03 08:46:35,895 | INFO     | zombie collector waiting for pid 19268
[2025-06-03 11:11:11] 2025-06-03 08:46:35,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:11:11] 2025-06-03 08:46:35,896 | INFO     | collected zombie processes
[2025-06-03 11:11:11] 2025-06-03 08:46:35,896 | INFO     | will attempt to kill all subprocesses of pid=19268
[2025-06-03 11:11:11] 2025-06-03 08:46:35,994 | INFO     | process IDs to be killed: [19268] (in reverse order)
[2025-06-03 11:11:11] 2025-06-03 08:46:36,441 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:11:11] 2025-06-03 08:46:36,441 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:11:11] 2025-06-03 08:46:36,444 | INFO     | did not find any defunct processes belonging to 19268
[2025-06-03 11:11:11] 2025-06-03 08:46:36,447 | INFO     | did not find any defunct processes belonging to 19268
[2025-06-03 11:11:11] 2025-06-03 08:46:36,447 | INFO     | ready for new job
[2025-06-03 11:11:11] 2025-06-03 08:46:36,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:11:11] 2025-06-03 08:46:36,449 | INFO     | **************************************
[2025-06-03 11:11:11] 2025-06-03 08:46:36,450 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:11:11] 2025-06-03 08:46:36,450 | INFO     | **************************************
[2025-06-03 11:11:11] 2025-06-03 08:46:36,450 | INFO     | 
[2025-06-03 11:11:11] 2025-06-03 08:46:36,450 | INFO     | pilot is running in a VM
[2025-06-03 11:11:11] 2025-06-03 08:46:36,451 | INFO     | architecture information:
[2025-06-03 11:11:11] 2025-06-03 08:46:36,456 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:11:11] 2025-06-03 08:46:36,555 | INFO     | cat /etc/os-release:
[2025-06-03 11:11:11] NAME="CentOS Linux"
[2025-06-03 11:11:11] VERSION="7 (Core)"
[2025-06-03 11:11:11] ID="centos"
[2025-06-03 11:11:11] ID_LIKE="rhel fedora"
[2025-06-03 11:11:11] VERSION_ID="7"
[2025-06-03 11:11:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:11:11] ANSI_COLOR="0;31"
[2025-06-03 11:11:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:11:11] HOME_URL="https://www.centos.org/"
[2025-06-03 11:11:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:11:11] 
[2025-06-03 11:11:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:11:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:11:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:11:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:11:11] 
[2025-06-03 11:11:11] 2025-06-03 08:46:36,555 | INFO     | **************************************
[2025-06-03 11:11:11] 2025-06-03 08:46:37,058 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 11:11:11] 2025-06-03 08:46:37,284 | INFO     | sufficient remaining disk space (497162387456 B)
[2025-06-03 11:11:11] 2025-06-03 08:46:37,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:11:11] 2025-06-03 08:46:37,285 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:11:11] 2025-06-03 08:46:37,285 | INFO     | update_server=False
[2025-06-03 11:11:11] 2025-06-03 08:46:37,285 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:11:11] 2025-06-03 08:46:37,285 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:11:11] 2025-06-03 08:46:37,285 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:11:11] 2025-06-03 08:46:37,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:11:11] 2025-06-03 08:46:37,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:11:11] 2025-06-03 08:46:37,320 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 11:11:11] 2025-06-03 08:46:37,321 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 11:11:11] 2025-06-03 08:46:37,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:11:11] 2025-06-03 08:46:37,321 | INFO     | will abort loop
[2025-06-03 11:11:11] 2025-06-03 08:46:37,637 | INFO     | all data control threads have been joined
[2025-06-03 11:11:11] 2025-06-03 08:46:37,781 | INFO     | all payload control threads have been joined
[2025-06-03 11:11:11] 2025-06-03 08:46:37,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:11:11] 2025-06-03 08:46:38,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:11:11] 2025-06-03 08:46:38,289 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:38,327 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:38,459 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:38,504 | INFO     | all job control threads have been joined
[2025-06-03 11:11:11] 2025-06-03 08:46:38,643 | INFO     | [data] control thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:38,664 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:38,788 | INFO     | [payload] control thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:38,854 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:38,935 | INFO     | [job] validate thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:39,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:11:11] 2025-06-03 08:46:39,385 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:39,422 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:39,510 | INFO     | [job] control thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:39,622 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:39,751 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:40,151 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:40,313 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:41,908 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:11:11] 2025-06-03 08:46:44,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716188809024)>', '<ExcThread(monitor, started 139715604895488)>']
[2025-06-03 11:11:11] 2025-06-03 08:46:44,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:11:11] 2025-06-03 08:46:44,332 | INFO     | [monitor] control thread has ended
[2025-06-03 11:11:11] 2025-06-03 08:46:49,041 | INFO     | all workflow threads have been joined
[2025-06-03 11:11:11] 2025-06-03 08:46:49,042 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:11:11] 2025-06-03 08:46:49,042 | INFO     | traces error code: 0
[2025-06-03 11:11:11] 2025-06-03 08:46:49,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:11:11] 2025-06-03 08:46:49,319 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:11:11] 2025-06-03 08:46:49,330 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:11:11] 2025-06-03 08:46:49,336 [wrapper] pilotpid: 8631
[2025-06-03 11:11:11] 2025-06-03 08:46:49,340 [wrapper] Pilot exit status: 0
[2025-06-03 11:11:11] 2025-06-03 08:46:49,642 [wrapper] pandaids: 6677391747
[2025-06-03 11:11:11] 2025-06-03 08:46:50,403 [wrapper] cleanup supervisor_pilot  7897 8632
[2025-06-03 11:11:11] 2025-06-03 08:46:50,432 [wrapper] Test setup, not cleaning
[2025-06-03 11:11:11] 2025-06-03 08:46:50,461 [wrapper] apfmon messages muted
[2025-06-03 11:11:11] 2025-06-03 08:46:50,483 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:11:11] 2025-06-03 08:46:50,812 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:11:11]  *** Error codes and diagnostics ***
[2025-06-03 11:11:11]     "exeErrorCode": 0,
[2025-06-03 11:11:11]     "exeErrorDiag": "",
[2025-06-03 11:11:11]     "pilotErrorCode": 0,
[2025-06-03 11:11:11]     "pilotErrorDiag": "",
[2025-06-03 11:11:11]  *** Listing of results directory ***
[2025-06-03 11:11:11] total 386088
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:02 pilot3.tar.gz
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:24 queuedata.json
[2025-06-03 11:11:11] -rwx------. 1 boinc boinc     37140 Jun  2 20:25 runpilot2-wrapper.sh
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc       100 Jun  3 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:11:11] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 07:01 run_atlas
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc       105 Jun  3 07:01 job.xml
[2025-06-03 11:11:11] -rw-r--r--. 2 boinc boinc 214665562 Jun  3 07:01 EVNT.45006593._000296.pool.root.1
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc      6392 Jun  3 07:01 init_data.xml
[2025-06-03 11:11:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:01 start_atlas.sh
[2025-06-03 11:11:11] drwxrwx--x. 2 boinc boinc        68 Jun  3 07:01 shared
[2025-06-03 11:11:11] -rw-r--r--. 2 boinc boinc    508874 Jun  3 07:01 input.tar.gz
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc         0 Jun  3 07:01 boinc_lockfile
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc      2521 Jun  3 07:01 pandaJob.out
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc    988073 Jun  3 07:04 agis_schedconf.cvmfs.json
[2025-06-03 11:11:11] drwx------. 4 boinc boinc      4096 Jun  3 07:04 pilot3
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc 173811124 Jun  3 10:43 HITS.45006595._007386.pool.root.1
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc       531 Jun  3 10:44 boinc_task_state.xml
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc      1032 Jun  3 10:44 memory_monitor_summary.json
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc   1603667 Jun  3 10:45 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc    372821 Jun  3 10:45 log.45006595._007386.job.log.tgz.1
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc        95 Jun  3 10:46 pilot_heartbeat.json
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc      7693 Jun  3 10:46 heartbeat.json
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc      4725 Jun  3 10:46 pilotlog.txt
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc   1150959 Jun  3 10:46 log.45006595._007386.job.log.1
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc       357 Jun  3 10:46 output.list
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc       620 Jun  3 10:46 runtime_log
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc   1546240 Jun  3 10:46 result.tar.gz
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc       656 Jun  3 10:46 uEgLDmv1Og7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmU0fKDmPIo4ln.diag
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc      8659 Jun  3 10:46 runtime_log.err
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:11 boinc_mmap_file
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:11 wrapper_checkpoint.txt
[2025-06-03 11:11:11] -rw-r--r--. 1 boinc boinc     20529 Jun  3 11:11 stderr.txt
[2025-06-03 11:11:11] HITS file was successfully produced:
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc 173811124 Jun  3 10:43 shared/HITS.pool.root.1
[2025-06-03 11:11:11]  *** Contents of shared directory: ***
[2025-06-03 11:11:11] total 381404
[2025-06-03 11:11:11] -rw-r--r--. 2 boinc boinc 214665562 Jun  3 07:01 ATLAS.root_0
[2025-06-03 11:11:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:01 start_atlas.sh
[2025-06-03 11:11:11] -rw-r--r--. 2 boinc boinc    508874 Jun  3 07:01 input.tar.gz
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc 173811124 Jun  3 10:43 HITS.pool.root.1
[2025-06-03 11:11:11] -rw-------. 1 boinc boinc   1546240 Jun  3 10:46 result.tar.gz
11:11:13 (2921): run_atlas exited; CPU time 45116.469315
11:11:13 (2921): called boinc_finish(0)

</stderr_txt>
]]>

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