Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:15:57 (7459): wrapper (7.7.26015): starting
07:15:57 (7459): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:15:57] Arguments: --nthreads 8
[2025-06-03 07:15:57] Threads: 8
[2025-06-03 07:15:57] Checking for CVMFS
[2025-06-03 07:15:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:15:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:15:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:15:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:15:59] 2.11.2.0 11201 31348 89656 146729 3 60 14481946 25165824 4636 130560 0 16048674 99.796 18966704 2021 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 07:15:59] CVMFS is ok
[2025-06-03 07:15:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:15:59] Checking for apptainer binary...
[2025-06-03 07:15:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:15:59] Running /usr/bin/apptainer --version
[2025-06-03 07:15:59] apptainer version 1.3.2-1.el7
[2025-06-03 07:15:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:52:07] cg-vwn265.simple-grid.lan
[2025-06-03 07:52:07] apptainer works
[2025-06-03 07:52:07] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:52:07] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:52:07] Starting ATLAS job with PandaID=6677391225
[2025-06-03 07:52:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:24:37]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:24:37] 2025-06-03 10:01:13,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:24:37] 2025-06-03 10:01:13,318 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:24:37] 2025-06-03 10:01:13,319 | INFO     | sum of square deviations: 3922276332.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,321 | INFO     | sum of deviations: 81808028114.99997
[2025-06-03 12:24:37] 2025-06-03 10:01:13,321 | INFO     | mean x: 1748937699.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,321 | INFO     | mean y: 2408029.772532189
[2025-06-03 12:24:37] 2025-06-03 10:01:13,321 | INFO     | -- intersect: -36475680799.37918
[2025-06-03 12:24:37] 2025-06-03 10:01:13,321 | INFO     | intersect: -36475680799.37918
[2025-06-03 12:24:37] 2025-06-03 10:01:13,322 | INFO     | chi2: 7.4337800293065355
[2025-06-03 12:24:37] 2025-06-03 10:01:13,322 | INFO     | sum of square deviations: 3675146117.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,329 | INFO     | sum of deviations: 111004275816.5
[2025-06-03 12:24:37] 2025-06-03 10:01:13,330 | INFO     | mean x: 1748937546.5
[2025-06-03 12:24:37] 2025-06-03 10:01:13,330 | INFO     | mean y: 2425795.557017544
[2025-06-03 12:24:37] 2025-06-03 10:01:13,330 | INFO     | -- intersect: -52822561189.17647
[2025-06-03 12:24:37] 2025-06-03 10:01:13,330 | INFO     | intersect: -52822561189.17647
[2025-06-03 12:24:37] 2025-06-03 10:01:13,330 | INFO     | chi2: 5.893151059041158
[2025-06-03 12:24:37] 2025-06-03 10:01:13,330 | INFO     | current chi2=5.893151059041158 (change=20.7247048499106 %)
[2025-06-03 12:24:37] 2025-06-03 10:01:13,331 | INFO     | right removable region: 227
[2025-06-03 12:24:37] 2025-06-03 10:01:13,331 | INFO     | sum of square deviations: 3675146117.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,333 | INFO     | sum of deviations: 5046425201.999994
[2025-06-03 12:24:37] 2025-06-03 10:01:13,333 | INFO     | mean x: 1748937851.5
[2025-06-03 12:24:37] 2025-06-03 10:01:13,333 | INFO     | mean y: 2455348.245614035
[2025-06-03 12:24:37] 2025-06-03 10:01:13,333 | INFO     | -- intersect: -2399050270.7325616
[2025-06-03 12:24:37] 2025-06-03 10:01:13,333 | INFO     | intersect: -2399050270.7325616
[2025-06-03 12:24:37] 2025-06-03 10:01:13,334 | INFO     | chi2: 3.0221686835777835
[2025-06-03 12:24:37] 2025-06-03 10:01:13,334 | INFO     | current chi2=3.0221686835777835 (change=59.345465272535 %)
[2025-06-03 12:24:37] 2025-06-03 10:01:13,334 | INFO     | sum of square deviations: 3438620752.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,336 | INFO     | sum of deviations: -32457928955.999996
[2025-06-03 12:24:37] 2025-06-03 10:01:13,336 | INFO     | mean x: 1748938004.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,336 | INFO     | mean y: 2479370.2197309416
[2025-06-03 12:24:37] 2025-06-03 10:01:13,336 | INFO     | -- intersect: 16511105815.652302
[2025-06-03 12:24:37] 2025-06-03 10:01:13,336 | INFO     | intersect: 16511105815.652302
[2025-06-03 12:24:37] 2025-06-03 10:01:13,337 | INFO     | chi2: 1.7561028369157259
[2025-06-03 12:24:37] 2025-06-03 10:01:13,337 | INFO     | current chi2=1.7561028369157259 (change=41.89262675977537 %)
[2025-06-03 12:24:37] 2025-06-03 10:01:13,337 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 12:24:37] 2025-06-03 10:01:13,339 | INFO     | sum of deviations: -29485542031.5
[2025-06-03 12:24:37] 2025-06-03 10:01:13,339 | INFO     | mean x: 1748938156.5
[2025-06-03 12:24:37] 2025-06-03 10:01:13,339 | INFO     | mean y: 2477322.26146789
[2025-06-03 12:24:37] 2025-06-03 10:01:13,339 | INFO     | -- intersect: 16055055822.370783
[2025-06-03 12:24:37] 2025-06-03 10:01:13,339 | INFO     | intersect: 16055055822.370783
[2025-06-03 12:24:37] 2025-06-03 10:01:13,340 | INFO     | chi2: 1.7332914409927915
[2025-06-03 12:24:37] 2025-06-03 10:01:13,340 | INFO     | current chi2=1.7332914409927915 (change=1.29897836524189 %)
[2025-06-03 12:24:37] 2025-06-03 10:01:13,340 | INFO     | left removable region: 30
[2025-06-03 12:24:37] 2025-06-03 10:01:13,340 | INFO     | sum of square deviations: 2370641658.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,342 | INFO     | sum of deviations: 5336020811.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,342 | INFO     | mean x: 1748938431.0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,342 | INFO     | mean y: 2494179.0659898478
[2025-06-03 12:24:37] 2025-06-03 10:01:13,342 | INFO     | -- intersect: -3934149654.6743546
[2025-06-03 12:24:37] 2025-06-03 10:01:13,342 | INFO     | intersect: -3934149654.6743546
[2025-06-03 12:24:37] 2025-06-03 10:01:13,342 | INFO     | chi2: 0.00135033460988237
[2025-06-03 12:24:37] 2025-06-03 10:01:13,342 | INFO     | -- intersect: -3934149654.6743546
[2025-06-03 12:24:37] 2025-06-03 10:01:13,343 | INFO     | current memory leak: 2.25 B/s (using 197 data points, chi2=0.00)
[2025-06-03 12:24:37] 2025-06-03 10:01:13,343 | INFO     | ..............................
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . Timing measurements:
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . get job = 0 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . initial setup = 6 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . payload setup = 164 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . stage-in = 0 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . payload execution = 14302 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . stage-out = 3 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | . log creation = 0 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,344 | INFO     | ..............................
[2025-06-03 12:24:37] 2025-06-03 10:01:13,949 | INFO     | 
[2025-06-03 12:24:37] 2025-06-03 10:01:13,949 | INFO     | job summary report
[2025-06-03 12:24:37] 2025-06-03 10:01:13,949 | INFO     | --------------------------------------------------
[2025-06-03 12:24:37] 2025-06-03 10:01:13,949 | INFO     | PanDA job id: 6677391225
[2025-06-03 12:24:37] 2025-06-03 10:01:13,949 | INFO     | task id: 45006595
[2025-06-03 12:24:37] 2025-06-03 10:01:13,949 | INFO     | errors: (none)
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | pilot state: finished 
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | transexitcode: 0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | exeerrorcode: 0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | exeerrordiag: 
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | exitcode: 0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | exitmsg: OK
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | cpuconsumptiontime: 50886 s
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | nevents: 400
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | neventsw: 0
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | pid: 10376
[2025-06-03 12:24:37] 2025-06-03 10:01:13,950 | INFO     | pgrp: 10376
[2025-06-03 12:24:37] 2025-06-03 10:01:13,951 | INFO     | corecount: 8
[2025-06-03 12:24:37] 2025-06-03 10:01:13,951 | INFO     | event service: False
[2025-06-03 12:24:37] 2025-06-03 10:01:13,951 | INFO     | sizes: {0: 2404948, 1: 2405203, 12: 2405203, 23: 2405231, 34: 2405259, 44: 2405287, 55: 2405443, 66: 2405471, 77: 2405499, 87: 2405555, 93: 2405789, 98: 2406097, 1
[2025-06-03 12:24:37] 2025-06-03 10:01:13,951 | INFO     | --------------------------------------------------
[2025-06-03 12:24:37] 2025-06-03 10:01:13,951 | INFO     | 
[2025-06-03 12:24:37] 2025-06-03 10:01:13,951 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-03 12:24:37] 2025-06-03 10:01:14,199 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,201 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:24:37] 2025-06-03 10:01:14,202 | INFO     | job 6677391225 has completed (purged errors)
[2025-06-03 12:24:37] 2025-06-03 10:01:14,202 | INFO     | overall cleanup function is called
[2025-06-03 12:24:37] 2025-06-03 10:01:15,211 | INFO     | --- collectZombieJob: --- 10, [10376]
[2025-06-03 12:24:37] 2025-06-03 10:01:15,211 | INFO     | zombie collector waiting for pid 10376
[2025-06-03 12:24:37] 2025-06-03 10:01:15,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:24:37] 2025-06-03 10:01:15,211 | INFO     | collected zombie processes
[2025-06-03 12:24:37] 2025-06-03 10:01:15,211 | INFO     | will attempt to kill all subprocesses of pid=10376
[2025-06-03 12:24:37] 2025-06-03 10:01:15,305 | INFO     | process IDs to be killed: [10376] (in reverse order)
[2025-06-03 12:24:37] 2025-06-03 10:01:16,284 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:24:37] 2025-06-03 10:01:16,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:24:37] 2025-06-03 10:01:16,288 | INFO     | did not find any defunct processes belonging to 10376
[2025-06-03 12:24:37] 2025-06-03 10:01:16,296 | INFO     | did not find any defunct processes belonging to 10376
[2025-06-03 12:24:37] 2025-06-03 10:01:16,297 | INFO     | ready for new job
[2025-06-03 12:24:37] 2025-06-03 10:01:16,297 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:24:37] 2025-06-03 10:01:16,304 | INFO     | **************************************
[2025-06-03 12:24:37] 2025-06-03 10:01:16,305 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:24:37] 2025-06-03 10:01:16,305 | INFO     | **************************************
[2025-06-03 12:24:37] 2025-06-03 10:01:16,305 | INFO     | 
[2025-06-03 12:24:37] 2025-06-03 10:01:16,306 | INFO     | pilot is running in a VM
[2025-06-03 12:24:37] 2025-06-03 10:01:16,306 | INFO     | architecture information:
[2025-06-03 12:24:37] 2025-06-03 10:01:16,324 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:24:37] 2025-06-03 10:01:16,376 | INFO     | PID=1799 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 12:24:37] 2025-06-03 10:01:16,376 | INFO     | .. there are 9 such processes running
[2025-06-03 12:24:37] 2025-06-03 10:01:16,535 | INFO     | cat /etc/os-release:
[2025-06-03 12:24:37] NAME="CentOS Linux"
[2025-06-03 12:24:37] VERSION="7 (Core)"
[2025-06-03 12:24:37] ID="centos"
[2025-06-03 12:24:37] ID_LIKE="rhel fedora"
[2025-06-03 12:24:37] VERSION_ID="7"
[2025-06-03 12:24:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:24:37] ANSI_COLOR="0;31"
[2025-06-03 12:24:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:24:37] HOME_URL="https://www.centos.org/"
[2025-06-03 12:24:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:24:37] 
[2025-06-03 12:24:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:24:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:24:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:24:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:24:37] 
[2025-06-03 12:24:37] 2025-06-03 10:01:16,536 | INFO     | **************************************
[2025-06-03 12:24:37] 2025-06-03 10:01:17,039 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-03 12:24:37] 2025-06-03 10:01:17,204 | INFO     | sufficient remaining disk space (496751345664 B)
[2025-06-03 12:24:37] 2025-06-03 10:01:17,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:24:37] 2025-06-03 10:01:17,204 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:24:37] 2025-06-03 10:01:17,204 | INFO     | update_server=False
[2025-06-03 12:24:37] 2025-06-03 10:01:17,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:24:37] 2025-06-03 10:01:17,205 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:24:37] 2025-06-03 10:01:17,205 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:24:37] 2025-06-03 10:01:17,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:24:37] 2025-06-03 10:01:17,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:24:37] 2025-06-03 10:01:17,340 | INFO     | all data control threads have been joined
[2025-06-03 12:24:37] 2025-06-03 10:01:17,372 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 12:24:37] 2025-06-03 10:01:17,372 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 12:24:37] 2025-06-03 10:01:17,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:24:37] 2025-06-03 10:01:17,372 | INFO     | will abort loop
[2025-06-03 12:24:37] 2025-06-03 10:01:17,519 | INFO     | all payload control threads have been joined
[2025-06-03 12:24:37] 2025-06-03 10:01:17,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:24:37] 2025-06-03 10:01:18,211 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,249 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,346 | INFO     | [data] control thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,379 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:24:37] 2025-06-03 10:01:18,525 | INFO     | [payload] control thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,530 | INFO     | all job control threads have been joined
[2025-06-03 12:24:37] 2025-06-03 10:01:18,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:24:37] 2025-06-03 10:01:18,794 | INFO     | [job] validate thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,799 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:18,927 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:19,010 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:19,124 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:19,235 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:19,506 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:19,536 | INFO     | [job] control thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:19,569 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:22,768 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:24:37] 2025-06-03 10:01:24,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033326761792)>', '<ExcThread(monitor, started 140032350340864)>']
[2025-06-03 12:24:37] 2025-06-03 10:01:25,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:24:37] 2025-06-03 10:01:25,252 | INFO     | [monitor] control thread has ended
[2025-06-03 12:24:37] 2025-06-03 10:01:29,731 | INFO     | all workflow threads have been joined
[2025-06-03 12:24:37] 2025-06-03 10:01:29,731 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:24:37] 2025-06-03 10:01:29,731 | INFO     | traces error code: 0
[2025-06-03 12:24:37] 2025-06-03 10:01:29,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:24:37] 2025-06-03 10:01:30,025 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:24:37] 2025-06-03 10:01:30,064 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:24:37] 2025-06-03 10:01:30,138 [wrapper] pilotpid: 1799
[2025-06-03 12:24:37] 2025-06-03 10:01:30,258 [wrapper] Pilot exit status: 0
[2025-06-03 12:24:37] 2025-06-03 10:01:30,804 [wrapper] pandaids: 6677391225
[2025-06-03 12:24:37] 2025-06-03 10:01:31,717 [wrapper] cleanup supervisor_pilot  1887 1800
[2025-06-03 12:24:37] 2025-06-03 10:01:31,819 [wrapper] Test setup, not cleaning
[2025-06-03 12:24:37] 2025-06-03 10:01:31,914 [wrapper] apfmon messages muted
[2025-06-03 12:24:37] 2025-06-03 10:01:32,010 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:24:37] 2025-06-03 10:01:32,128 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:24:37]  *** Error codes and diagnostics ***
[2025-06-03 12:24:37]     "exeErrorCode": 0,
[2025-06-03 12:24:37]     "exeErrorDiag": "",
[2025-06-03 12:24:37]     "pilotErrorCode": 0,
[2025-06-03 12:24:37]     "pilotErrorDiag": "",
[2025-06-03 12:24:37]  *** Listing of results directory ***
[2025-06-03 12:24:37] total 398628
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:02 pilot3.tar.gz
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:14 queuedata.json
[2025-06-03 12:24:37] -rwx------. 1 boinc boinc     37140 Jun  2 20:15 runpilot2-wrapper.sh
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc       100 Jun  3 07:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:24:37] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 07:15 run_atlas
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc       105 Jun  3 07:15 job.xml
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc      6391 Jun  3 07:15 init_data.xml
[2025-06-03 12:24:37] -rw-r--r--. 2 boinc boinc 214208605 Jun  3 07:15 EVNT.45006593._000281.pool.root.1
[2025-06-03 12:24:37] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:15 start_atlas.sh
[2025-06-03 12:24:37] drwxrwx--x. 2 boinc boinc        68 Jun  3 07:15 shared
[2025-06-03 12:24:37] -rw-r--r--. 2 boinc boinc    508876 Jun  3 07:15 input.tar.gz
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc         0 Jun  3 07:15 boinc_lockfile
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc      2520 Jun  3 07:52 pandaJob.out
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc    988073 Jun  3 07:55 agis_schedconf.cvmfs.json
[2025-06-03 12:24:37] drwx------. 4 boinc boinc      4096 Jun  3 07:55 pilot3
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc 186882176 Jun  3 11:58 HITS.45006595._007004.pool.root.1
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc       531 Jun  3 11:58 boinc_task_state.xml
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc      1015 Jun  3 11:59 memory_monitor_summary.json
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc   1603667 Jun  3 11:59 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc    376185 Jun  3 11:59 log.45006595._007004.job.log.tgz.1
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc        95 Jun  3 12:01 pilot_heartbeat.json
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc      7685 Jun  3 12:01 heartbeat.json
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc      5116 Jun  3 12:01 pilotlog.txt
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc   1263279 Jun  3 12:01 log.45006595._007004.job.log.1
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc       357 Jun  3 12:01 output.list
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc       620 Jun  3 12:01 runtime_log
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc   1658880 Jun  3 12:01 result.tar.gz
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc      8659 Jun  3 12:01 runtime_log.err
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc       656 Jun  3 12:01 lWdMDmyrOg7n9Rq4apOajLDm4fhM0noT9bVof3QYDma8VKDm1HD8Ym.diag
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc      8192 Jun  3 12:24 boinc_mmap_file
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc        28 Jun  3 12:24 wrapper_checkpoint.txt
[2025-06-03 12:24:37] -rw-r--r--. 1 boinc boinc     20646 Jun  3 12:24 stderr.txt
[2025-06-03 12:24:37] HITS file was successfully produced:
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc 186882176 Jun  3 11:58 shared/HITS.pool.root.1
[2025-06-03 12:24:37]  *** Contents of shared directory: ***
[2025-06-03 12:24:37] total 393832
[2025-06-03 12:24:37] -rw-r--r--. 2 boinc boinc 214208605 Jun  3 07:15 ATLAS.root_0
[2025-06-03 12:24:37] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:15 start_atlas.sh
[2025-06-03 12:24:37] -rw-r--r--. 2 boinc boinc    508876 Jun  3 07:15 input.tar.gz
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc 186882176 Jun  3 11:58 HITS.pool.root.1
[2025-06-03 12:24:37] -rw-------. 1 boinc boinc   1658880 Jun  3 12:01 result.tar.gz
12:24:39 (7459): run_atlas exited; CPU time 51089.072481
12:24:39 (7459): called boinc_finish(0)

</stderr_txt>
]]>

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