Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:30:24 (27540): wrapper (7.7.26015): starting
03:30:24 (27540): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 03:30:24] Arguments: --nthreads 8
[2025-06-03 03:30:24] Threads: 8
[2025-06-03 03:30:24] Checking for CVMFS
[2025-06-03 03:30:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:30:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 03:30:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 03:30:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 03:30:27] 2.11.2.0 18352 31291 92644 146723 1 210 21244685 25165825 4632 130560 0 16514907 99.787 18703518 4396 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 03:30:27] CVMFS is ok
[2025-06-03 03:30:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 03:30:27] Checking for apptainer binary...
[2025-06-03 03:30:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 03:30:27] Running /usr/bin/apptainer --version
[2025-06-03 03:30:27] apptainer version 1.3.2-1.el7
[2025-06-03 03:30:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:13:26] cg-vwn313.simple-grid.lan
[2025-06-03 04:13:26] apptainer works
[2025-06-03 04:13:26] Set ATHENA_PROC_NUMBER=8
[2025-06-03 04:13:26] Set ATHENA_CORE_NUMBER=8
[2025-06-03 04:13:26] Starting ATLAS job with PandaID=6677390691
[2025-06-03 04:13:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 07:58:03]  *** The last 200 lines of the pilot log: ***
[2025-06-03 07:58:03] 2025-06-03 05:53:35,236 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 07:58:03] 2025-06-03 05:53:35,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 07:58:03] 2025-06-03 05:53:35,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 07:58:03] 2025-06-03 05:53:35,241 | INFO     | fitting pss+swap vs Time
[2025-06-03 07:58:03] 2025-06-03 05:53:35,242 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 07:58:03] 2025-06-03 05:53:35,244 | INFO     | sum of deviations: -55547515914.99998
[2025-06-03 07:58:03] 2025-06-03 05:53:35,244 | INFO     | mean x: 1748923404.5
[2025-06-03 07:58:03] 2025-06-03 05:53:35,244 | INFO     | mean y: 2613720.7102803737
[2025-06-03 07:58:03] 2025-06-03 05:53:35,244 | INFO     | -- intersect: 31971328064.58226
[2025-06-03 07:58:03] 2025-06-03 05:53:35,244 | INFO     | intersect: 31971328064.58226
[2025-06-03 07:58:03] 2025-06-03 05:53:35,244 | INFO     | chi2: 2.7809800294745513
[2025-06-03 07:58:03] 2025-06-03 05:53:35,245 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,246 | INFO     | sum of deviations: -37523120441.99996
[2025-06-03 07:58:03] 2025-06-03 05:53:35,247 | INFO     | mean x: 1748923252.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,247 | INFO     | mean y: 2626735.066985646
[2025-06-03 07:58:03] 2025-06-03 05:53:35,247 | INFO     | -- intersect: 23185238345.65553
[2025-06-03 07:58:03] 2025-06-03 05:53:35,247 | INFO     | intersect: 23185238345.65553
[2025-06-03 07:58:03] 2025-06-03 05:53:35,247 | INFO     | chi2: 2.017136765462663
[2025-06-03 07:58:03] 2025-06-03 05:53:35,247 | INFO     | current chi2=2.017136765462663 (change=27.466693608591346 %)
[2025-06-03 07:58:03] 2025-06-03 05:53:35,248 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,249 | INFO     | sum of deviations: -33926887249.5
[2025-06-03 07:58:03] 2025-06-03 05:53:35,249 | INFO     | mean x: 1748923099.5
[2025-06-03 07:58:03] 2025-06-03 05:53:35,250 | INFO     | mean y: 2629500.5539215687
[2025-06-03 07:58:03] 2025-06-03 05:53:35,250 | INFO     | -- intersect: 22542750287.7612
[2025-06-03 07:58:03] 2025-06-03 05:53:35,250 | INFO     | intersect: 22542750287.7612
[2025-06-03 07:58:03] 2025-06-03 05:53:35,250 | INFO     | chi2: 2.018344469378367
[2025-06-03 07:58:03] 2025-06-03 05:53:35,250 | INFO     | current chi2=2.018344469378367 (change=-0.05987218796378161 %)
[2025-06-03 07:58:03] 2025-06-03 05:53:35,250 | INFO     | right removable region: 203
[2025-06-03 07:58:03] 2025-06-03 05:53:35,251 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,252 | INFO     | sum of deviations: -96263663972.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,252 | INFO     | mean x: 1748923557.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,253 | INFO     | mean y: 2643319.052631579
[2025-06-03 07:58:03] 2025-06-03 05:53:35,253 | INFO     | -- intersect: 59476468975.624596
[2025-06-03 07:58:03] 2025-06-03 05:53:35,253 | INFO     | intersect: 59476468975.624596
[2025-06-03 07:58:03] 2025-06-03 05:53:35,253 | INFO     | chi2: 0.9960694267949053
[2025-06-03 07:58:03] 2025-06-03 05:53:35,253 | INFO     | current chi2=0.9960694267949053 (change=64.18279109386103 %)
[2025-06-03 07:58:03] 2025-06-03 05:53:35,254 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,255 | INFO     | sum of deviations: -96356031605.5
[2025-06-03 07:58:03] 2025-06-03 05:53:35,255 | INFO     | mean x: 1748923709.5
[2025-06-03 07:58:03] 2025-06-03 05:53:35,255 | INFO     | mean y: 2643360.720588235
[2025-06-03 07:58:03] 2025-06-03 05:53:35,256 | INFO     | -- intersect: 64019048181.83257
[2025-06-03 07:58:03] 2025-06-03 05:53:35,256 | INFO     | intersect: 64019048181.83257
[2025-06-03 07:58:03] 2025-06-03 05:53:35,256 | INFO     | chi2: 0.9611352293266816
[2025-06-03 07:58:03] 2025-06-03 05:53:35,256 | INFO     | current chi2=0.9611352293266816 (change=3.5072050731074964 %)
[2025-06-03 07:58:03] 2025-06-03 05:53:35,256 | INFO     | left removable region: 20
[2025-06-03 07:58:03] 2025-06-03 05:53:35,257 | INFO     | sum of square deviations: 1900284932.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,258 | INFO     | sum of deviations: -68341210126.99998
[2025-06-03 07:58:03] 2025-06-03 05:53:35,258 | INFO     | mean x: 1748923679.0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,258 | INFO     | mean y: 2657908.486338798
[2025-06-03 07:58:03] 2025-06-03 05:53:35,258 | INFO     | -- intersect: 62900362684.17461
[2025-06-03 07:58:03] 2025-06-03 05:53:35,258 | INFO     | intersect: 62900362684.17461
[2025-06-03 07:58:03] 2025-06-03 05:53:35,259 | INFO     | chi2: 0.15285246434122735
[2025-06-03 07:58:03] 2025-06-03 05:53:35,259 | INFO     | -- intersect: 62900362684.17461
[2025-06-03 07:58:03] 2025-06-03 05:53:35,259 | INFO     | current memory leak: -35.96 B/s (using 183 data points, chi2=0.15)
[2025-06-03 07:58:03] 2025-06-03 05:53:35,260 | INFO     | ..............................
[2025-06-03 07:58:03] 2025-06-03 05:53:35,260 | INFO     | . Timing measurements:
[2025-06-03 07:58:03] 2025-06-03 05:53:35,260 | INFO     | . get job = 0 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,260 | INFO     | . initial setup = 2 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,260 | INFO     | . payload setup = 12 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,260 | INFO     | . stage-in = 0 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,261 | INFO     | . payload execution = 13036 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,261 | INFO     | . stage-out = 4 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,261 | INFO     | . log creation = 1 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,261 | INFO     | ..............................
[2025-06-03 07:58:03] 2025-06-03 05:53:35,383 | INFO     | 
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | job summary report
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | --------------------------------------------------
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | PanDA job id: 6677390691
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | task id: 45006595
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | errors: (none)
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | pilot state: finished 
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | transexitcode: 0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,384 | INFO     | exeerrorcode: 0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | exeerrordiag: 
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | exitcode: 0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | exitmsg: OK
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | cpuconsumptiontime: 49426 s
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | nevents: 400
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | neventsw: 0
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | pid: 30739
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | pgrp: 30739
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | corecount: 8
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | event service: False
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | sizes: {0: 2405005, 1: 2405204, 12: 2405204, 14: 2405438, 23: 2405466, 13053: 2435078, 13059: 2444021, 13062: 2444077, 13156: 2444247}
[2025-06-03 07:58:03] 2025-06-03 05:53:35,385 | INFO     | --------------------------------------------------
[2025-06-03 07:58:03] 2025-06-03 05:53:35,386 | INFO     | 
[2025-06-03 07:58:03] 2025-06-03 05:53:35,386 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-03 07:58:03] 2025-06-03 05:53:36,013 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,013 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,013 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,013 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | job 6677390691 has completed (purged errors)
[2025-06-03 07:58:03] 2025-06-03 05:53:36,015 | INFO     | overall cleanup function is called
[2025-06-03 07:58:03] 2025-06-03 05:53:37,024 | INFO     | --- collectZombieJob: --- 10, [30739]
[2025-06-03 07:58:03] 2025-06-03 05:53:37,025 | INFO     | zombie collector waiting for pid 30739
[2025-06-03 07:58:03] 2025-06-03 05:53:37,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 07:58:03] 2025-06-03 05:53:37,025 | INFO     | collected zombie processes
[2025-06-03 07:58:03] 2025-06-03 05:53:37,025 | INFO     | will attempt to kill all subprocesses of pid=30739
[2025-06-03 07:58:03] 2025-06-03 05:53:37,163 | INFO     | process IDs to be killed: [30739] (in reverse order)
[2025-06-03 07:58:03] 2025-06-03 05:53:37,964 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 07:58:03] 2025-06-03 05:53:37,964 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 07:58:03] 2025-06-03 05:53:37,968 | INFO     | did not find any defunct processes belonging to 30739
[2025-06-03 07:58:03] 2025-06-03 05:53:37,971 | INFO     | did not find any defunct processes belonging to 30739
[2025-06-03 07:58:03] 2025-06-03 05:53:37,972 | INFO     | ready for new job
[2025-06-03 07:58:03] 2025-06-03 05:53:37,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 07:58:03] 2025-06-03 05:53:37,977 | INFO     | **************************************
[2025-06-03 07:58:03] 2025-06-03 05:53:37,977 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 07:58:03] 2025-06-03 05:53:37,977 | INFO     | **************************************
[2025-06-03 07:58:03] 2025-06-03 05:53:37,977 | INFO     | 
[2025-06-03 07:58:03] 2025-06-03 05:53:37,978 | INFO     | pilot is running in a VM
[2025-06-03 07:58:03] 2025-06-03 05:53:37,978 | INFO     | architecture information:
[2025-06-03 07:58:03] 2025-06-03 05:53:37,995 | INFO     | executing command: cat /etc/os-release
[2025-06-03 07:58:03] 2025-06-03 05:53:38,273 | INFO     | cat /etc/os-release:
[2025-06-03 07:58:03] NAME="CentOS Linux"
[2025-06-03 07:58:03] VERSION="7 (Core)"
[2025-06-03 07:58:03] ID="centos"
[2025-06-03 07:58:03] ID_LIKE="rhel fedora"
[2025-06-03 07:58:03] VERSION_ID="7"
[2025-06-03 07:58:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 07:58:03] ANSI_COLOR="0;31"
[2025-06-03 07:58:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 07:58:03] HOME_URL="https://www.centos.org/"
[2025-06-03 07:58:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 07:58:03] 
[2025-06-03 07:58:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 07:58:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 07:58:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 07:58:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 07:58:03] 
[2025-06-03 07:58:03] 2025-06-03 05:53:38,273 | INFO     | **************************************
[2025-06-03 07:58:03] 2025-06-03 05:53:38,778 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-03 07:58:03] 2025-06-03 05:53:39,015 | INFO     | sufficient remaining disk space (496877174784 B)
[2025-06-03 07:58:03] 2025-06-03 05:53:39,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 07:58:03] 2025-06-03 05:53:39,016 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 07:58:03] 2025-06-03 05:53:39,016 | INFO     | update_server=False
[2025-06-03 07:58:03] 2025-06-03 05:53:39,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 07:58:03] 2025-06-03 05:53:39,017 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 07:58:03] 2025-06-03 05:53:39,018 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 07:58:03] 2025-06-03 05:53:39,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 07:58:03] 2025-06-03 05:53:39,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 07:58:03] 2025-06-03 05:53:39,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 07:58:03] 2025-06-03 05:53:39,329 | INFO     | all job control threads have been joined
[2025-06-03 07:58:03] 2025-06-03 05:53:39,496 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 07:58:03] 2025-06-03 05:53:39,497 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 07:58:03] 2025-06-03 05:53:39,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 07:58:03] 2025-06-03 05:53:39,497 | INFO     | will abort loop
[2025-06-03 07:58:03] 2025-06-03 05:53:40,011 | INFO     | all data control threads have been joined
[2025-06-03 07:58:03] 2025-06-03 05:53:40,022 | INFO     | [job] retrieve thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,035 | INFO     | all payload control threads have been joined
[2025-06-03 07:58:03] 2025-06-03 05:53:40,290 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,335 | INFO     | [job] control thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,395 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 07:58:03] 2025-06-03 05:53:40,466 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,502 | INFO     | [job] job monitor thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,529 | INFO     | [data] copytool_in thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,813 | INFO     | [payload] validate_post thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,898 | INFO     | [job] validate thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:40,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:41,017 | INFO     | [data] control thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:41,031 | INFO     | [data] copytool_out thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:41,040 | INFO     | [payload] control thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:41,091 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:41,401 | INFO     | [job] queue monitor thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:41,427 | INFO     | [payload] failed_post thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:41,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 07:58:03] 2025-06-03 05:53:45,993 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 07:58:03] 2025-06-03 05:53:47,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140137368921920)>', '<ExcThread(monitor, started 140136645908224)>']
[2025-06-03 07:58:03] 2025-06-03 05:53:48,071 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 07:58:03] 2025-06-03 05:53:48,072 | INFO     | [monitor] control thread has ended
[2025-06-03 07:58:03] 2025-06-03 05:53:52,978 | INFO     | all workflow threads have been joined
[2025-06-03 07:58:03] 2025-06-03 05:53:52,979 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 07:58:03] 2025-06-03 05:53:52,979 | INFO     | traces error code: 0
[2025-06-03 07:58:03] 2025-06-03 05:53:52,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 07:58:03] 2025-06-03 05:53:53,347 [wrapper] ==== pilot stdout END ====
[2025-06-03 07:58:03] 2025-06-03 05:53:53,404 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 07:58:03] 2025-06-03 05:53:53,503 [wrapper] pilotpid: 22141
[2025-06-03 07:58:03] 2025-06-03 05:53:53,595 [wrapper] Pilot exit status: 0
[2025-06-03 07:58:03] 2025-06-03 05:53:54,012 [wrapper] pandaids: 6677390691
[2025-06-03 07:58:03] 2025-06-03 05:53:54,709 [wrapper] cleanup supervisor_pilot  2713 22142
[2025-06-03 07:58:03] 2025-06-03 05:53:54,793 [wrapper] Test setup, not cleaning
[2025-06-03 07:58:03] 2025-06-03 05:53:54,885 [wrapper] apfmon messages muted
[2025-06-03 07:58:03] 2025-06-03 05:53:54,990 [wrapper] ==== wrapper stdout END ====
[2025-06-03 07:58:03] 2025-06-03 05:53:55,096 [wrapper] ==== wrapper stderr END ====
[2025-06-03 07:58:03]  *** Error codes and diagnostics ***
[2025-06-03 07:58:03]     "exeErrorCode": 0,
[2025-06-03 07:58:03]     "exeErrorDiag": "",
[2025-06-03 07:58:03]     "pilotErrorCode": 0,
[2025-06-03 07:58:03]     "pilotErrorDiag": "",
[2025-06-03 07:58:03]  *** Listing of results directory ***
[2025-06-03 07:58:03] total 395808
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:02 pilot3.tar.gz
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:11 queuedata.json
[2025-06-03 07:58:03] -rwx------. 1 boinc boinc     37140 Jun  2 20:12 runpilot2-wrapper.sh
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc       100 Jun  3 03:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 07:58:03] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 03:30 run_atlas
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc       105 Jun  3 03:30 job.xml
[2025-06-03 07:58:03] -rw-r--r--. 2 boinc boinc 217352492 Jun  3 03:30 EVNT.45006593._000272.pool.root.1
[2025-06-03 07:58:03] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:30 start_atlas.sh
[2025-06-03 07:58:03] drwxrwx--x. 2 boinc boinc        68 Jun  3 03:30 shared
[2025-06-03 07:58:03] -rw-r--r--. 2 boinc boinc    508874 Jun  3 03:30 input.tar.gz
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc      6392 Jun  3 03:30 init_data.xml
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc         0 Jun  3 03:30 boinc_lockfile
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc      2520 Jun  3 04:13 pandaJob.out
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc    988073 Jun  3 04:13 agis_schedconf.cvmfs.json
[2025-06-03 07:58:03] drwx------. 4 boinc boinc      4096 Jun  3 04:13 pilot3
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc 181115707 Jun  3 07:50 HITS.45006595._006779.pool.root.1
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc       531 Jun  3 07:50 boinc_task_state.xml
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc      1018 Jun  3 07:51 memory_monitor_summary.json
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc   1603667 Jun  3 07:51 agis_ddmendpoints.agis.ALL.json
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc    363474 Jun  3 07:51 log.45006595._006779.job.log.tgz.1
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc        95 Jun  3 07:53 pilot_heartbeat.json
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc      7690 Jun  3 07:53 heartbeat.json
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc      4726 Jun  3 07:53 pilotlog.txt
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc   1144248 Jun  3 07:53 log.45006595._006779.job.log.1
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc       357 Jun  3 07:53 output.list
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc       620 Jun  3 07:53 runtime_log
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc   1525760 Jun  3 07:53 result.tar.gz
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc       656 Jun  3 07:53 yMLMDmyoOg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmi6VKDm2nzixn.diag
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc      8673 Jun  3 07:53 runtime_log.err
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc      8192 Jun  3 07:58 boinc_mmap_file
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc        28 Jun  3 07:58 wrapper_checkpoint.txt
[2025-06-03 07:58:03] -rw-r--r--. 1 boinc boinc     20499 Jun  3 07:58 stderr.txt
[2025-06-03 07:58:03] HITS file was successfully produced:
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc 181115707 Jun  3 07:50 shared/HITS.pool.root.1
[2025-06-03 07:58:03]  *** Contents of shared directory: ***
[2025-06-03 07:58:03] total 391140
[2025-06-03 07:58:03] -rw-r--r--. 2 boinc boinc 217352492 Jun  3 03:30 ATLAS.root_0
[2025-06-03 07:58:03] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:30 start_atlas.sh
[2025-06-03 07:58:03] -rw-r--r--. 2 boinc boinc    508874 Jun  3 03:30 input.tar.gz
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc 181115707 Jun  3 07:50 HITS.pool.root.1
[2025-06-03 07:58:03] -rw-------. 1 boinc boinc   1525760 Jun  3 07:53 result.tar.gz
07:58:05 (27540): run_atlas exited; CPU time 49595.528707
07:58:05 (27540): called boinc_finish(0)

</stderr_txt>
]]>

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