Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:53:26 (19649): wrapper (7.7.26015): starting
04:53:26 (19649): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 04:53:26] Arguments: --nthreads 8
[2025-06-03 04:53:26] Threads: 8
[2025-06-03 04:53:26] Checking for CVMFS
[2025-06-03 04:53:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:53:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:53:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:53:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:53:28] 2.11.2.0 26884 31209 88992 146724 2 60 14426350 25165825 4637 130560 0 16028323 99.830 18034430 2015 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 04:53:28] CVMFS is ok
[2025-06-03 04:53:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:53:28] Checking for apptainer binary...
[2025-06-03 04:53:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:53:28] Running /usr/bin/apptainer --version
[2025-06-03 04:53:28] apptainer version 1.3.2-1.el7
[2025-06-03 04:53:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 05:23:53] cg-vwn403.simple-grid.lan
[2025-06-03 05:23:53] apptainer works
[2025-06-03 05:23:53] Set ATHENA_PROC_NUMBER=8
[2025-06-03 05:23:53] Set ATHENA_CORE_NUMBER=8
[2025-06-03 05:23:53] Starting ATLAS job with PandaID=6677390546
[2025-06-03 05:23:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:30:19]  *** The last 200 lines of the pilot log: ***
[2025-06-03 09:30:19] 2025-06-03 07:11:47,705 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 09:30:19] 2025-06-03 07:11:47,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 09:30:19] 2025-06-03 07:11:47,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 09:30:19] 2025-06-03 07:11:47,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 09:30:19] 2025-06-03 07:11:47,711 | INFO     | fitting pss+swap vs Time
[2025-06-03 09:30:19] 2025-06-03 07:11:47,712 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,714 | INFO     | sum of deviations: 77091744489.99998
[2025-06-03 09:30:19] 2025-06-03 07:11:47,714 | INFO     | mean x: 1748928149.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,714 | INFO     | mean y: 2415966.924170616
[2025-06-03 09:30:19] 2025-06-03 07:11:47,714 | INFO     | -- intersect: -46285092677.98462
[2025-06-03 09:30:19] 2025-06-03 07:11:47,714 | INFO     | intersect: -46285092677.98462
[2025-06-03 09:30:19] 2025-06-03 07:11:47,715 | INFO     | chi2: 7.73350134751892
[2025-06-03 09:30:19] 2025-06-03 07:11:47,718 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | sum of deviations: 89315501550.00003
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | mean x: 1748927996.5
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | mean y: 2424980.067961165
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | -- intersect: -57624961037.5186
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | intersect: -57624961037.5186
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | chi2: 7.011833359650743
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | current chi2=7.011833359650743 (change=9.331710895734231 %)
[2025-06-03 09:30:19] 2025-06-03 07:11:47,720 | INFO     | right removable region: 205
[2025-06-03 09:30:19] 2025-06-03 07:11:47,721 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 09:30:19] 2025-06-03 07:11:47,722 | INFO     | sum of deviations: 4359352220.500008
[2025-06-03 09:30:19] 2025-06-03 07:11:47,722 | INFO     | mean x: 1748928301.5
[2025-06-03 09:30:19] 2025-06-03 07:11:47,723 | INFO     | mean y: 2470776.0922330096
[2025-06-03 09:30:19] 2025-06-03 07:11:47,723 | INFO     | -- intersect: -2810233767.3324075
[2025-06-03 09:30:19] 2025-06-03 07:11:47,723 | INFO     | intersect: -2810233767.3324075
[2025-06-03 09:30:19] 2025-06-03 07:11:47,723 | INFO     | chi2: 2.718674741207091
[2025-06-03 09:30:19] 2025-06-03 07:11:47,723 | INFO     | current chi2=2.718674741207091 (change=64.84548694002228 %)
[2025-06-03 09:30:19] 2025-06-03 07:11:47,723 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,725 | INFO     | sum of deviations: -37200738675.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,725 | INFO     | mean x: 1748928454.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,725 | INFO     | mean y: 2503531.457711443
[2025-06-03 09:30:19] 2025-06-03 07:11:47,725 | INFO     | -- intersect: 25841031049.947186
[2025-06-03 09:30:19] 2025-06-03 07:11:47,725 | INFO     | intersect: 25841031049.947186
[2025-06-03 09:30:19] 2025-06-03 07:11:47,725 | INFO     | chi2: 1.0090367240202653
[2025-06-03 09:30:19] 2025-06-03 07:11:47,731 | INFO     | current chi2=1.0090367240202653 (change=62.88497815769409 %)
[2025-06-03 09:30:19] 2025-06-03 07:11:47,731 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,733 | INFO     | sum of deviations: -38050711790.5
[2025-06-03 09:30:19] 2025-06-03 07:11:47,733 | INFO     | mean x: 1748928606.5
[2025-06-03 09:30:19] 2025-06-03 07:11:47,733 | INFO     | mean y: 2504173.2704081633
[2025-06-03 09:30:19] 2025-06-03 07:11:47,733 | INFO     | -- intersect: 28506092293.209454
[2025-06-03 09:30:19] 2025-06-03 07:11:47,733 | INFO     | intersect: 28506092293.209454
[2025-06-03 09:30:19] 2025-06-03 07:11:47,734 | INFO     | chi2: 0.9743213411910043
[2025-06-03 09:30:19] 2025-06-03 07:11:47,734 | INFO     | current chi2=0.9743213411910043 (change=3.4404479047051804 %)
[2025-06-03 09:30:19] 2025-06-03 07:11:47,734 | INFO     | left removable region: 30
[2025-06-03 09:30:19] 2025-06-03 07:11:47,734 | INFO     | sum of square deviations: 1661798600.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,735 | INFO     | sum of deviations: -4772245574.000003
[2025-06-03 09:30:19] 2025-06-03 07:11:47,735 | INFO     | mean x: 1748928881.0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,735 | INFO     | mean y: 2497384.5257142857
[2025-06-03 09:30:19] 2025-06-03 07:11:47,735 | INFO     | -- intersect: 5024958055.507762
[2025-06-03 09:30:19] 2025-06-03 07:11:47,735 | INFO     | intersect: 5024958055.507762
[2025-06-03 09:30:19] 2025-06-03 07:11:47,736 | INFO     | chi2: 0.06683747866598426
[2025-06-03 09:30:19] 2025-06-03 07:11:47,736 | INFO     | -- intersect: 5024958055.507762
[2025-06-03 09:30:19] 2025-06-03 07:11:47,736 | INFO     | current memory leak: -2.87 B/s (using 175 data points, chi2=0.07)
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | ..............................
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . Timing measurements:
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . get job = 0 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . initial setup = 4 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . payload setup = 173 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . stage-in = 0 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . payload execution = 13020 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . stage-out = 4 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,737 | INFO     | . log creation = 1 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,738 | INFO     | ..............................
[2025-06-03 09:30:19] 2025-06-03 07:11:47,957 | INFO     | 
[2025-06-03 09:30:19] 2025-06-03 07:11:47,957 | INFO     | job summary report
[2025-06-03 09:30:19] 2025-06-03 07:11:47,957 | INFO     | --------------------------------------------------
[2025-06-03 09:30:19] 2025-06-03 07:11:47,957 | INFO     | PanDA job id: 6677390546
[2025-06-03 09:30:19] 2025-06-03 07:11:47,957 | INFO     | task id: 45006595
[2025-06-03 09:30:19] 2025-06-03 07:11:47,957 | INFO     | errors: (none)
[2025-06-03 09:30:19] 2025-06-03 07:11:47,957 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | pilot state: finished 
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | transexitcode: 0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | exeerrorcode: 0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | exeerrordiag: 
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | exitcode: 0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | exitmsg: OK
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | cpuconsumptiontime: 47981 s
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | nevents: 400
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | neventsw: 0
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | pid: 19045
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | pgrp: 19045
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | corecount: 8
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | event service: False
[2025-06-03 09:30:19] 2025-06-03 07:11:47,958 | INFO     | sizes: {0: 2405006, 1: 2405205, 12: 2405205, 23: 2405233, 33: 2405261, 44: 2405317, 55: 2405473, 66: 2405501, 76: 2405529, 87: 2405585, 89: 2405819, 98: 2406127, 1
[2025-06-03 09:30:19] 2025-06-03 07:11:47,959 | INFO     | --------------------------------------------------
[2025-06-03 09:30:19] 2025-06-03 07:11:47,959 | INFO     | 
[2025-06-03 09:30:19] 2025-06-03 07:11:47,959 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-03 09:30:19] 2025-06-03 07:11:48,561 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,562 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | job 6677390546 has completed (purged errors)
[2025-06-03 09:30:19] 2025-06-03 07:11:48,563 | INFO     | overall cleanup function is called
[2025-06-03 09:30:19] 2025-06-03 07:11:49,572 | INFO     | --- collectZombieJob: --- 10, [19045]
[2025-06-03 09:30:19] 2025-06-03 07:11:49,572 | INFO     | zombie collector waiting for pid 19045
[2025-06-03 09:30:19] 2025-06-03 07:11:49,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 09:30:19] 2025-06-03 07:11:49,572 | INFO     | collected zombie processes
[2025-06-03 09:30:19] 2025-06-03 07:11:49,572 | INFO     | will attempt to kill all subprocesses of pid=19045
[2025-06-03 09:30:19] 2025-06-03 07:11:49,676 | INFO     | process IDs to be killed: [19045] (in reverse order)
[2025-06-03 09:30:19] 2025-06-03 07:11:50,385 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 09:30:19] 2025-06-03 07:11:50,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 09:30:19] 2025-06-03 07:11:50,389 | INFO     | did not find any defunct processes belonging to 19045
[2025-06-03 09:30:19] 2025-06-03 07:11:50,397 | INFO     | did not find any defunct processes belonging to 19045
[2025-06-03 09:30:19] 2025-06-03 07:11:50,398 | INFO     | ready for new job
[2025-06-03 09:30:19] 2025-06-03 07:11:50,398 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 09:30:19] 2025-06-03 07:11:50,400 | INFO     | **************************************
[2025-06-03 09:30:19] 2025-06-03 07:11:50,400 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 09:30:19] 2025-06-03 07:11:50,400 | INFO     | **************************************
[2025-06-03 09:30:19] 2025-06-03 07:11:50,400 | INFO     | 
[2025-06-03 09:30:19] 2025-06-03 07:11:50,401 | INFO     | pilot is running in a VM
[2025-06-03 09:30:19] 2025-06-03 07:11:50,401 | INFO     | architecture information:
[2025-06-03 09:30:19] 2025-06-03 07:11:50,419 | INFO     | executing command: cat /etc/os-release
[2025-06-03 09:30:19] 2025-06-03 07:11:50,741 | INFO     | cat /etc/os-release:
[2025-06-03 09:30:19] NAME="CentOS Linux"
[2025-06-03 09:30:19] VERSION="7 (Core)"
[2025-06-03 09:30:19] ID="centos"
[2025-06-03 09:30:19] ID_LIKE="rhel fedora"
[2025-06-03 09:30:19] VERSION_ID="7"
[2025-06-03 09:30:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 09:30:19] ANSI_COLOR="0;31"
[2025-06-03 09:30:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 09:30:19] HOME_URL="https://www.centos.org/"
[2025-06-03 09:30:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 09:30:19] 
[2025-06-03 09:30:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 09:30:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 09:30:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 09:30:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 09:30:19] 
[2025-06-03 09:30:19] 2025-06-03 07:11:50,742 | INFO     | **************************************
[2025-06-03 09:30:19] 2025-06-03 07:11:51,245 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-03 09:30:19] 2025-06-03 07:11:51,445 | INFO     | sufficient remaining disk space (496547921920 B)
[2025-06-03 09:30:19] 2025-06-03 07:11:51,446 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 09:30:19] 2025-06-03 07:11:51,446 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 09:30:19] 2025-06-03 07:11:51,446 | INFO     | update_server=False
[2025-06-03 09:30:19] 2025-06-03 07:11:51,446 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 09:30:19] 2025-06-03 07:11:51,614 | INFO     | all job control threads have been joined
[2025-06-03 09:30:19] 2025-06-03 07:11:51,656 | INFO     | all payload control threads have been joined
[2025-06-03 09:30:19] 2025-06-03 07:11:52,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:30:19] 2025-06-03 07:11:52,120 | INFO     | aborting loop
[2025-06-03 09:30:19] 2025-06-03 07:11:52,157 | INFO     | all data control threads have been joined
[2025-06-03 09:30:19] 2025-06-03 07:11:52,328 | INFO     | PID=8486 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 09:30:19] 2025-06-03 07:11:52,328 | INFO     | .. there are 9 such processes running
[2025-06-03 09:30:19] 2025-06-03 07:11:52,328 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 09:30:19] 2025-06-03 07:11:52,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 09:30:19] 2025-06-03 07:11:52,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 09:30:19] 2025-06-03 07:11:52,452 | INFO     | [job] retrieve thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:52,620 | INFO     | [job] control thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:52,662 | INFO     | [payload] control thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:52,779 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 09:30:19] 2025-06-03 07:11:52,816 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:52,852 | INFO     | [data] copytool_in thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:52,928 | INFO     | [payload] failed_post thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:52,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:30:19] 2025-06-03 07:11:53,126 | INFO     | [job] job monitor thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:53,163 | INFO     | [data] control thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:53,336 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:53,374 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:53,442 | INFO     | [job] validate thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:53,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 09:30:19] 2025-06-03 07:11:53,572 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:53,913 | INFO     | [payload] validate_post thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:53,977 | INFO     | [job] queue monitor thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:54,787 | INFO     | [data] copytool_out thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:57,497 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 09:30:19] 2025-06-03 07:11:59,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794823137088)>', '<ExcThread(monitor, started 139794382309120)>']
[2025-06-03 09:30:19] 2025-06-03 07:11:59,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 09:30:19] 2025-06-03 07:11:59,370 | INFO     | [monitor] control thread has ended
[2025-06-03 09:30:19] 2025-06-03 07:12:04,348 | INFO     | all workflow threads have been joined
[2025-06-03 09:30:19] 2025-06-03 07:12:04,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 09:30:19] 2025-06-03 07:12:04,348 | INFO     | traces error code: 0
[2025-06-03 09:30:19] 2025-06-03 07:12:04,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 09:30:19] 2025-06-03 07:12:04,754 [wrapper] ==== pilot stdout END ====
[2025-06-03 09:30:19] 2025-06-03 07:12:04,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 09:30:19] 2025-06-03 07:12:04,938 [wrapper] pilotpid: 8486
[2025-06-03 09:30:19] 2025-06-03 07:12:05,048 [wrapper] Pilot exit status: 0
[2025-06-03 09:30:19] 2025-06-03 07:12:05,561 [wrapper] pandaids: 6677390546
[2025-06-03 09:30:19] 2025-06-03 07:12:06,499 [wrapper] cleanup supervisor_pilot 16261 8487
[2025-06-03 09:30:19] 2025-06-03 07:12:06,531 [wrapper] Test setup, not cleaning
[2025-06-03 09:30:19] 2025-06-03 07:12:06,611 [wrapper] apfmon messages muted
[2025-06-03 09:30:19] 2025-06-03 07:12:06,685 [wrapper] ==== wrapper stdout END ====
[2025-06-03 09:30:19] 2025-06-03 07:12:06,794 [wrapper] ==== wrapper stderr END ====
[2025-06-03 09:30:19]  *** Error codes and diagnostics ***
[2025-06-03 09:30:19]     "exeErrorCode": 0,
[2025-06-03 09:30:19]     "exeErrorDiag": "",
[2025-06-03 09:30:19]     "pilotErrorCode": 0,
[2025-06-03 09:30:19]     "pilotErrorDiag": "",
[2025-06-03 09:30:19]  *** Listing of results directory ***
[2025-06-03 09:30:19] total 393868
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:02 queuedata.json
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:02 pilot3.tar.gz
[2025-06-03 09:30:19] -rwx------. 1 boinc boinc     37140 Jun  2 20:03 runpilot2-wrapper.sh
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc       100 Jun  3 04:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 09:30:19] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 04:53 run_atlas
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc       105 Jun  3 04:53 job.xml
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc      6392 Jun  3 04:53 init_data.xml
[2025-06-03 09:30:19] -rw-r--r--. 2 boinc boinc 217350019 Jun  3 04:53 EVNT.45006593._000266.pool.root.1
[2025-06-03 09:30:19] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:53 start_atlas.sh
[2025-06-03 09:30:19] drwxrwx--x. 2 boinc boinc        68 Jun  3 04:53 shared
[2025-06-03 09:30:19] -rw-r--r--. 2 boinc boinc    508875 Jun  3 04:53 input.tar.gz
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc         0 Jun  3 04:53 boinc_lockfile
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc      2521 Jun  3 05:23 pandaJob.out
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc    988073 Jun  3 05:27 agis_schedconf.cvmfs.json
[2025-06-03 09:30:19] drwx------. 4 boinc boinc      4096 Jun  3 05:27 pilot3
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc 179112161 Jun  3 09:08 HITS.45006595._006634.pool.root.1
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc       531 Jun  3 09:09 boinc_task_state.xml
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc      1016 Jun  3 09:10 memory_monitor_summary.json
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc   1603667 Jun  3 09:10 agis_ddmendpoints.agis.ALL.json
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc    370806 Jun  3 09:10 log.45006595._006634.job.log.tgz.1
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc        95 Jun  3 09:11 pilot_heartbeat.json
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc      7684 Jun  3 09:11 heartbeat.json
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc      4807 Jun  3 09:12 pilotlog.txt
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc   1148444 Jun  3 09:12 log.45006595._006634.job.log.1
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc       357 Jun  3 09:12 output.list
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc       620 Jun  3 09:12 runtime_log
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc   1536000 Jun  3 09:12 result.tar.gz
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc      8659 Jun  3 09:12 runtime_log.err
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc       656 Jun  3 09:12 0ABNDmygOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4tfKDmHPgCPo.diag
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc      8192 Jun  3 09:30 boinc_mmap_file
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc        28 Jun  3 09:30 wrapper_checkpoint.txt
[2025-06-03 09:30:19] -rw-r--r--. 1 boinc boinc     20581 Jun  3 09:30 stderr.txt
[2025-06-03 09:30:19] HITS file was successfully produced:
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc 179112161 Jun  3 09:08 shared/HITS.pool.root.1
[2025-06-03 09:30:19]  *** Contents of shared directory: ***
[2025-06-03 09:30:19] total 389188
[2025-06-03 09:30:19] -rw-r--r--. 2 boinc boinc 217350019 Jun  3 04:53 ATLAS.root_0
[2025-06-03 09:30:19] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:53 start_atlas.sh
[2025-06-03 09:30:19] -rw-r--r--. 2 boinc boinc    508875 Jun  3 04:53 input.tar.gz
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc 179112161 Jun  3 09:08 HITS.pool.root.1
[2025-06-03 09:30:19] -rw-------. 1 boinc boinc   1536000 Jun  3 09:12 result.tar.gz
09:30:21 (19649): run_atlas exited; CPU time 48165.623102
09:30:21 (19649): called boinc_finish(0)

</stderr_txt>
]]>

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