Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 04:03:12 (4580): Detected: vboxwrapper 26206
2025-06-03 04:03:12 (4580): Detected: BOINC client v8.0.2
2025-06-03 04:03:13 (4580): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-03 04:03:13 (4580): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 04:03:14 (4580): Create VM. (boinc_bfe2982530d284f2, slot#1)
2025-06-03 04:03:15 (4580): Setting Memory Size for VM. (4800MB)
2025-06-03 04:03:15 (4580): Setting CPU Count for VM. (8)
2025-06-03 04:03:15 (4580): Setting Chipset Options for VM.
2025-06-03 04:03:15 (4580): Setting Graphics Controller Options for VM.
2025-06-03 04:03:16 (4580): Setting Boot Options for VM.
2025-06-03 04:03:16 (4580): Setting Network Configuration for NAT.
2025-06-03 04:03:16 (4580): Enabling VM Network Access.
2025-06-03 04:03:16 (4580): Disabling USB Support for VM.
2025-06-03 04:03:17 (4580): Disabling COM Port Support for VM.
2025-06-03 04:03:17 (4580): Disabling LPT Port Support for VM.
2025-06-03 04:03:17 (4580): Disabling Audio Support for VM.
2025-06-03 04:03:17 (4580): Disabling Clipboard Support for VM.
2025-06-03 04:03:18 (4580): Disabling Drag and Drop Support for VM.
2025-06-03 04:03:18 (4580): Adding storage controller(s) to VM.
2025-06-03 04:03:18 (4580): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 04:03:21 (4580): Adding VirtualBox Guest Additions to VM.
2025-06-03 04:03:21 (4580): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 04:03:22 (4580): forwarding host port 51901 to guest port 80
2025-06-03 04:03:22 (4580): Enabling remote desktop for VM.
2025-06-03 04:03:22 (4580): Required extension pack not installed, remote desktop not enabled.
2025-06-03 04:03:22 (4580): Enabling shared directory for VM.
2025-06-03 04:03:23 (4580): Starting VM using VBoxManage interface. (boinc_bfe2982530d284f2, slot#1)
2025-06-03 04:03:29 (4580): Successfully started VM. (PID = '28616')
2025-06-03 04:03:29 (4580): Reporting VM Process ID to BOINC.
2025-06-03 04:03:29 (4580): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-03 04:03:29 (4580): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 04:03:29 (4580): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 04:03:29 (4580): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 04:03:29 (4580): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 04:03:29 (4580): Detected: Web Application Enabled (http://localhost:51901)
2025-06-03 04:03:29 (4580): Preference change detected
2025-06-03 04:03:29 (4580): Setting CPU throttle for VM. (100%)
2025-06-03 04:03:29 (4580): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 04:03:31 (4580): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 04:03:31 (4580): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 04:03:33 (4580): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 04:03:33 (4580): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 04:03:33 (4580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 04:03:39 (4580): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 04:03:39 (4580): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 04:03:44 (4580): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.000145 main     Log opened 2025-06-03T04:03:41.807413000Z
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.000232 main     OS Product: Linux
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.000262 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.000284 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.000305 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.000305 main     Process ID: 1365
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.000306 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 04:03:44 (4580): Guest Log: 00:00:00.001080 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 04:03:44 (4580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 04:03:44 (4580): Guest Log: [INFO] Mounting shared directory
2025-06-03 04:03:44 (4580): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 04:03:54 (4580): Guest Log: 00:00:10.004040 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 356 563 000ns (GuestNow=1 748 919 833 453 355 000 ns GuestLast=1 748 923 421 809 918 000 ns fSetTimeLastLoop=true )
2025-06-03 04:04:09 (4580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 04:04:09 (4580): Guest Log: [INFO] Detected branch: prod
2025-06-03 04:04:11 (4580): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 04:04:11 (4580): Guest Log: Copying input files
2025-06-03 04:04:14 (4580): Guest Log: Copied input files into RunAtlas.
2025-06-03 04:04:14 (4580): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 04:04:14 (4580): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 04:04:14 (4580): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 04:04:14 (4580): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 04:04:43 (4580): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 04:04:45 (4580): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 04:04:45 (4580): Guest Log: 2.6.3.0 1666 0 32196 146727 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 04:04:46 (4580): Guest Log: copied the webapp to /var/www
2025-06-03 04:04:46 (4580): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-03 04:04:46 (4580): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-03 04:04:48 (4580): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 04:04:48 (4580): Guest Log:  *** Starting ATLAS job. (PandaID=6677387797 taskID=45006595) ***
2025-06-03 04:23:16 (4580): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 05:23:16 (4580): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 05:23:24 (4580): Guest Log: 00:19:40.727608 timesync vgsvcTimeSyncWorker: Radical host time change: 3 609 568 000 000ns (HostNow=1 748 924 603 730 000 000 ns HostLast=1 748 920 994 162 000 000 ns)
2025-06-03 05:23:34 (4580): Guest Log: 00:19:50.727835 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 609 554 014 000ns (GuestNow=1 748 924 613 730 423 000 ns GuestLast=1 748 921 004 176 409 000 ns fSetTimeLastLoop=true )
2025-06-03 06:20:01 (4580): Guest Log:  *** Job finished ***
2025-06-03 06:20:01 (4580): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:46,617 | INFO     | [data] queue_monitor thread has finished
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:52,632 | INFO     | job.realtimelogging is not enabled
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:53,651 | INFO     | [payload] run_realtimelog thread has finished
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:54,309 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140307712153408)>', '<ExcThread(monitor, started 140307412788992)>']
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:55,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:55,184 | INFO     | [monitor] control thread has ended
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,315 | INFO     | all workflow threads have been joined
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,315 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,315 | INFO     | traces error code: 0
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,393 [wrapper] ==== pilot stdout END ====
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,398 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,402 [wrapper] pilotpid: 6025
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,407 [wrapper] Pilot exit status: 0
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,503 [wrapper] pandaids: 6677387797
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,531 [wrapper] cleanup supervisor_pilot 24782 6026
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,535 [wrapper] Test setup, not cleaning
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,540 [wrapper] apfmon messages muted
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,544 [wrapper] ==== wrapper stdout END ====
2025-06-03 06:20:01 (4580): Guest Log: 2025-06-03 05:19:59,548 [wrapper] ==== wrapper stderr END ====
2025-06-03 06:20:01 (4580): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 06:20:01 (4580): Guest Log:     "exeErrorCode": 0,
2025-06-03 06:20:01 (4580): Guest Log:     "exeErrorDiag": "",
2025-06-03 06:20:01 (4580): Guest Log:     "pilotErrorCode": 0,
2025-06-03 06:20:01 (4580): Guest Log:     "pilotErrorDiag": "",
2025-06-03 06:20:01 (4580): Guest Log:  *** Listing of results directory ***
2025-06-03 06:20:01 (4580): Guest Log: total 182824
2025-06-03 06:20:01 (4580): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  2 17:25 pilot3.tar.gz
2025-06-03 06:20:01 (4580): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  2 17:34 runpilot2-wrapper.sh
2025-06-03 06:20:01 (4580): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  2 17:35 queuedata.json
2025-06-03 06:20:01 (4580): Guest Log: -rwxr-xr-x. 1 atlas atlas      9130 Jun  3 03:04 init_data.xml
2025-06-03 06:20:01 (4580): Guest Log: -rwxr-xr-x. 1 atlas atlas    508884 Jun  3 03:04 input.tar.gz
2025-06-03 06:20:01 (4580): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 03:04 start_atlas.sh
2025-06-03 06:20:01 (4580): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 03:04 EVNT.45006593._000231.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 06:20:01 (4580): Guest Log: -rw-r--r--. 1 atlas atlas      2521 Jun  3 03:04 pandaJob.out
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas    988073 Jun  3 03:06 agis_schedconf.cvmfs.json
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 03:06 agis_ddmendpoints.agis.ALL.json
2025-06-03 06:20:01 (4580): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 03:06 pilot3
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas 182103195 Jun  3 05:18 HITS.45006595._005758.pool.root.1
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas      1033 Jun  3 05:18 memory_monitor_summary.json
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas    286798 Jun  3 05:18 log.45006595._005758.job.log.tgz.1
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas        97 Jun  3 05:18 pilot_heartbeat.json
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas      7723 Jun  3 05:19 heartbeat.json
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas      4485 Jun  3 05:19 pilotlog.txt
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas    381051 Jun  3 05:19 log.45006595._005758.job.log.1
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas       357 Jun  3 05:19 output.list
2025-06-03 06:20:01 (4580): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  3 05:19 runtime_log
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas    686080 Jun  3 05:19 result.tar.gz
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas       650 Jun  3 05:19 u4JNDmoEOg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIzVKDmK0h8Ro.diag
2025-06-03 06:20:01 (4580): Guest Log: -rw-r--r--. 1 atlas atlas      8583 Jun  3 05:19 runtime_log.err
2025-06-03 06:20:01 (4580): Guest Log: Looking for outputfile HITS.45006595._005758.pool.root.1
2025-06-03 06:20:01 (4580): Guest Log: HITS file was successfully produced
2025-06-03 06:20:01 (4580): Guest Log: -rw-------. 1 atlas atlas 182103195 Jun  3 05:18 /home/atlas/RunAtlas/HITS.45006595._005758.pool.root.1
2025-06-03 06:20:02 (4580): Guest Log: Successfully finished the ATLAS job!
2025-06-03 06:20:02 (4580): Guest Log: Copying the results back to the shared directory!
2025-06-03 06:20:02 (4580): Guest Log:  *** Contents of shared directory: ***
2025-06-03 06:20:02 (4580): Guest Log: total 388820
2025-06-03 06:20:02 (4580): Guest Log: -rwxrwxrwx. 1 root root 214815561 Jun  3 03:03 ATLAS.root_0
2025-06-03 06:20:02 (4580): Guest Log: -rwxrwxrwx. 1 root root 182103195 Jun  3 05:20 HITS.pool.root.1
2025-06-03 06:20:02 (4580): Guest Log: -rwxrwxrwx. 1 root root      9130 Jun  3 03:03 init_data.xml
2025-06-03 06:20:02 (4580): Guest Log: -rwxrwxrwx. 1 root root    508884 Jun  2 20:21 input.tar.gz
2025-06-03 06:20:02 (4580): Guest Log: -rwxrwxrwx. 1 root root    686080 Jun  3 05:20 result.tar.gz
2025-06-03 06:20:02 (4580): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  2 20:21 start_atlas.sh
2025-06-03 06:20:02 (4580): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 06:20:02 (4580): VM Completion File Detected.
2025-06-03 06:20:02 (4580): Powering off VM.
2025-06-03 06:20:02 (4580): Successfully stopped VM.
2025-06-03 06:20:02 (4580): Deregistering VM. (boinc_bfe2982530d284f2, slot#1)
2025-06-03 06:20:02 (4580): Removing network bandwidth throttle group from VM.
2025-06-03 06:20:03 (4580): Removing VM from VirtualBox.
06:20:08 (4580): called boinc_finish(0)

</stderr_txt>
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