Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:31:52 (24391): wrapper (7.7.26015): starting
02:31:52 (24391): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 02:31:52] Arguments: --nthreads 8
[2025-06-03 02:31:52] Threads: 8
[2025-06-03 02:31:52] Checking for CVMFS
[2025-06-03 02:31:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 02:31:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 02:31:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 02:31:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 02:31:54] 2.11.2.0 17834 31070 89656 146723 0 114 14354143 25165825 4362 130560 0 16701602 99.823 18154119 2050 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 02:31:54] CVMFS is ok
[2025-06-03 02:31:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 02:31:54] Checking for apptainer binary...
[2025-06-03 02:31:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 02:31:54] Running /usr/bin/apptainer --version
[2025-06-03 02:31:54] apptainer version 1.3.2-1.el7
[2025-06-03 02:31:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 02:31:56] cg-vwn466.simple-grid.lan
[2025-06-03 02:31:56] apptainer works
[2025-06-03 02:31:56] Set ATHENA_PROC_NUMBER=8
[2025-06-03 02:31:56] Set ATHENA_CORE_NUMBER=8
[2025-06-03 02:31:56] Starting ATLAS job with PandaID=6677390072
[2025-06-03 02:31:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 07:15:34]  *** The last 200 lines of the pilot log: ***
[2025-06-03 07:15:34] 2025-06-03 03:50:52,543 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6677390072/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 07:15:34] 2025-06-03 03:50:52,544 | INFO     | extracted standard info from prmon json
[2025-06-03 07:15:34] 2025-06-03 03:50:52,544 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 07:15:34] 2025-06-03 03:50:52,544 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 07:15:34] 2025-06-03 03:50:52,544 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 07:15:34] 2025-06-03 03:50:52,545 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 07:15:34] 2025-06-03 03:50:52,549 | INFO     | fitting pss+swap vs Time
[2025-06-03 07:15:34] 2025-06-03 03:50:52,550 | INFO     | sum of square deviations: 2229146912.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,551 | INFO     | sum of deviations: -48275483081.99999
[2025-06-03 07:15:34] 2025-06-03 03:50:52,551 | INFO     | mean x: 1748916648.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,551 | INFO     | mean y: 2588903.564766839
[2025-06-03 07:15:34] 2025-06-03 03:50:52,552 | INFO     | -- intersect: 37877973248.06334
[2025-06-03 07:15:34] 2025-06-03 03:50:52,552 | INFO     | intersect: 37877973248.06334
[2025-06-03 07:15:34] 2025-06-03 03:50:52,552 | INFO     | chi2: 2.7046190105167387
[2025-06-03 07:15:34] 2025-06-03 03:50:52,553 | INFO     | sum of square deviations: 2060343747.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,554 | INFO     | sum of deviations: -32243562115.500008
[2025-06-03 07:15:34] 2025-06-03 03:50:52,554 | INFO     | mean x: 1748916495.5
[2025-06-03 07:15:34] 2025-06-03 03:50:52,554 | INFO     | mean y: 2603144.526595745
[2025-06-03 07:15:34] 2025-06-03 03:50:52,554 | INFO     | -- intersect: 27372452345.46037
[2025-06-03 07:15:34] 2025-06-03 03:50:52,554 | INFO     | intersect: 27372452345.46037
[2025-06-03 07:15:34] 2025-06-03 03:50:52,555 | INFO     | chi2: 1.9270710289283381
[2025-06-03 07:15:34] 2025-06-03 03:50:52,555 | INFO     | current chi2=1.9270710289283381 (change=28.74889138044785 %)
[2025-06-03 07:15:34] 2025-06-03 03:50:52,555 | INFO     | sum of square deviations: 1900284932.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,557 | INFO     | sum of deviations: -29268731347.99999
[2025-06-03 07:15:34] 2025-06-03 03:50:52,557 | INFO     | mean x: 1748916343.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,557 | INFO     | mean y: 2605979.5300546447
[2025-06-03 07:15:34] 2025-06-03 03:50:52,557 | INFO     | -- intersect: 26939915080.602062
[2025-06-03 07:15:34] 2025-06-03 03:50:52,557 | INFO     | intersect: 26939915080.602062
[2025-06-03 07:15:34] 2025-06-03 03:50:52,558 | INFO     | chi2: 1.9280191585656634
[2025-06-03 07:15:34] 2025-06-03 03:50:52,558 | INFO     | current chi2=1.9280191585656634 (change=-0.049200554784559834 %)
[2025-06-03 07:15:34] 2025-06-03 03:50:52,558 | INFO     | right removable region: 182
[2025-06-03 07:15:34] 2025-06-03 03:50:52,558 | INFO     | sum of square deviations: 2060343747.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,559 | INFO     | sum of deviations: -82949800128.99998
[2025-06-03 07:15:34] 2025-06-03 03:50:52,560 | INFO     | mean x: 1748916800.5
[2025-06-03 07:15:34] 2025-06-03 03:50:52,560 | INFO     | mean y: 2619918.64893617
[2025-06-03 07:15:34] 2025-06-03 03:50:52,560 | INFO     | -- intersect: 70414316634.28691
[2025-06-03 07:15:34] 2025-06-03 03:50:52,560 | INFO     | intersect: 70414316634.28691
[2025-06-03 07:15:34] 2025-06-03 03:50:52,560 | INFO     | chi2: 0.9845562726014735
[2025-06-03 07:15:34] 2025-06-03 03:50:52,560 | INFO     | current chi2=0.9845562726014735 (change=63.59722871232181 %)
[2025-06-03 07:15:34] 2025-06-03 03:50:52,561 | INFO     | sum of square deviations: 1900284932.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,562 | INFO     | sum of deviations: -82008876471.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,562 | INFO     | mean x: 1748916953.0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,563 | INFO     | mean y: 2618984.0710382513
[2025-06-03 07:15:34] 2025-06-03 03:50:52,563 | INFO     | -- intersect: 75479044619.70552
[2025-06-03 07:15:34] 2025-06-03 03:50:52,563 | INFO     | intersect: 75479044619.70552
[2025-06-03 07:15:34] 2025-06-03 03:50:52,563 | INFO     | chi2: 0.9557894780335368
[2025-06-03 07:15:34] 2025-06-03 03:50:52,563 | INFO     | current chi2=0.9557894780335368 (change=2.9218029856157237 %)
[2025-06-03 07:15:34] 2025-06-03 03:50:52,563 | INFO     | left removable region: 20
[2025-06-03 07:15:34] 2025-06-03 03:50:52,564 | INFO     | sum of square deviations: 1318277740.5
[2025-06-03 07:15:34] 2025-06-03 03:50:52,565 | INFO     | sum of deviations: -55680143274.00001
[2025-06-03 07:15:34] 2025-06-03 03:50:52,565 | INFO     | mean x: 1748916922.5
[2025-06-03 07:15:34] 2025-06-03 03:50:52,565 | INFO     | mean y: 2632683.925925926
[2025-06-03 07:15:34] 2025-06-03 03:50:52,565 | INFO     | -- intersect: 73871698228.63324
[2025-06-03 07:15:34] 2025-06-03 03:50:52,565 | INFO     | intersect: 73871698228.63324
[2025-06-03 07:15:34] 2025-06-03 03:50:52,566 | INFO     | chi2: 0.13348091707763174
[2025-06-03 07:15:34] 2025-06-03 03:50:52,566 | INFO     | -- intersect: 73871698228.63324
[2025-06-03 07:15:34] 2025-06-03 03:50:52,566 | INFO     | current memory leak: -42.24 B/s (using 162 data points, chi2=0.13)
[2025-06-03 07:15:34] 2025-06-03 03:50:52,567 | INFO     | ..............................
[2025-06-03 07:15:34] 2025-06-03 03:50:52,567 | INFO     | . Timing measurements:
[2025-06-03 07:15:34] 2025-06-03 03:50:52,567 | INFO     | . get job = 0 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,567 | INFO     | . initial setup = 2 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,567 | INFO     | . payload setup = 12 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,567 | INFO     | . stage-in = 0 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,567 | INFO     | . payload execution = 11781 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,568 | INFO     | . stage-out = 2 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,568 | INFO     | . log creation = 0 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,568 | INFO     | ..............................
[2025-06-03 07:15:34] 2025-06-03 03:50:52,720 | INFO     | 
[2025-06-03 07:15:34] 2025-06-03 03:50:52,720 | INFO     | job summary report
[2025-06-03 07:15:34] 2025-06-03 03:50:52,720 | INFO     | --------------------------------------------------
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | PanDA job id: 6677390072
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | task id: 45006595
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | errors: (none)
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | pilot state: finished 
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | transexitcode: 0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | exeerrorcode: 0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | exeerrordiag: 
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | exitcode: 0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | exitmsg: OK
[2025-06-03 07:15:34] 2025-06-03 03:50:52,721 | INFO     | cpuconsumptiontime: 44981 s
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | nevents: 400
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | neventsw: 0
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | pid: 6557
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | pgrp: 6557
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | corecount: 8
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | event service: False
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | sizes: {0: 2405004, 1: 2405203, 9: 2405409, 11: 2405437, 11798: 2434315, 11801: 2443256, 11804: 2443440, 11894: 2443610}
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | --------------------------------------------------
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | 
[2025-06-03 07:15:34] 2025-06-03 03:50:52,722 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 07:15:34] 2025-06-03 03:50:53,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,066 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,066 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,066 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,066 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,067 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,068 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 07:15:34] 2025-06-03 03:50:53,068 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,068 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 07:15:34] 2025-06-03 03:50:53,068 | INFO     | job 6677390072 has completed (purged errors)
[2025-06-03 07:15:34] 2025-06-03 03:50:53,068 | INFO     | overall cleanup function is called
[2025-06-03 07:15:34] 2025-06-03 03:50:54,076 | INFO     | --- collectZombieJob: --- 10, [6557]
[2025-06-03 07:15:34] 2025-06-03 03:50:54,077 | INFO     | zombie collector waiting for pid 6557
[2025-06-03 07:15:34] 2025-06-03 03:50:54,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 07:15:34] 2025-06-03 03:50:54,077 | INFO     | collected zombie processes
[2025-06-03 07:15:34] 2025-06-03 03:50:54,077 | INFO     | will attempt to kill all subprocesses of pid=6557
[2025-06-03 07:15:34] 2025-06-03 03:50:54,165 | INFO     | process IDs to be killed: [6557] (in reverse order)
[2025-06-03 07:15:34] 2025-06-03 03:50:54,228 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 07:15:34] 2025-06-03 03:50:54,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 07:15:34] 2025-06-03 03:50:54,232 | INFO     | did not find any defunct processes belonging to 6557
[2025-06-03 07:15:34] 2025-06-03 03:50:54,235 | INFO     | did not find any defunct processes belonging to 6557
[2025-06-03 07:15:34] 2025-06-03 03:50:54,236 | INFO     | ready for new job
[2025-06-03 07:15:34] 2025-06-03 03:50:54,236 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 07:15:34] 2025-06-03 03:50:54,238 | INFO     | **************************************
[2025-06-03 07:15:34] 2025-06-03 03:50:54,238 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 07:15:34] 2025-06-03 03:50:54,238 | INFO     | **************************************
[2025-06-03 07:15:34] 2025-06-03 03:50:54,238 | INFO     | 
[2025-06-03 07:15:34] 2025-06-03 03:50:54,239 | INFO     | pilot is running in a VM
[2025-06-03 07:15:34] 2025-06-03 03:50:54,239 | INFO     | architecture information:
[2025-06-03 07:15:34] 2025-06-03 03:50:54,239 | INFO     | executing command: cat /etc/os-release
[2025-06-03 07:15:34] 2025-06-03 03:50:54,266 | INFO     | cat /etc/os-release:
[2025-06-03 07:15:34] NAME="CentOS Linux"
[2025-06-03 07:15:34] VERSION="7 (Core)"
[2025-06-03 07:15:34] ID="centos"
[2025-06-03 07:15:34] ID_LIKE="rhel fedora"
[2025-06-03 07:15:34] VERSION_ID="7"
[2025-06-03 07:15:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 07:15:34] ANSI_COLOR="0;31"
[2025-06-03 07:15:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 07:15:34] HOME_URL="https://www.centos.org/"
[2025-06-03 07:15:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 07:15:34] 
[2025-06-03 07:15:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 07:15:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 07:15:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 07:15:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 07:15:34] 
[2025-06-03 07:15:34] 2025-06-03 03:50:54,266 | INFO     | **************************************
[2025-06-03 07:15:34] 2025-06-03 03:50:54,771 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 07:15:34] 2025-06-03 03:50:54,996 | INFO     | sufficient remaining disk space (496731422720 B)
[2025-06-03 07:15:34] 2025-06-03 03:50:54,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 07:15:34] 2025-06-03 03:50:54,996 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 07:15:34] 2025-06-03 03:50:54,997 | INFO     | update_server=False
[2025-06-03 07:15:34] 2025-06-03 03:50:54,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 07:15:34] 2025-06-03 03:50:54,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 07:15:34] 2025-06-03 03:50:55,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 07:15:34] 2025-06-03 03:50:55,004 | INFO     | aborting loop
[2025-06-03 07:15:34] 2025-06-03 03:50:55,495 | INFO     | all payload control threads have been joined
[2025-06-03 07:15:34] 2025-06-03 03:50:55,562 | INFO     | all data control threads have been joined
[2025-06-03 07:15:34] 2025-06-03 03:50:55,584 | INFO     | all job control threads have been joined
[2025-06-03 07:15:34] 2025-06-03 03:50:55,739 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 07:15:34] 2025-06-03 03:50:55,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 07:15:34] 2025-06-03 03:50:55,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 07:15:34] 2025-06-03 03:50:56,002 | INFO     | [job] retrieve thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,009 | INFO     | [job] job monitor thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,501 | INFO     | [payload] control thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,507 | INFO     | [data] copytool_in thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,550 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,568 | INFO     | [data] control thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,590 | INFO     | [job] control thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,607 | INFO     | [payload] failed_post thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:56,775 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:57,004 | INFO     | [data] copytool_out thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:57,011 | INFO     | [payload] validate_post thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:57,407 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:57,455 | INFO     | [job] validate thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:50:57,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 07:15:34] 2025-06-03 03:50:58,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 07:15:34] 2025-06-03 03:50:58,741 | INFO     | [job] queue monitor thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:51:02,350 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 07:15:34] 2025-06-03 03:51:04,176 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762331834176)>', '<ExcThread(monitor, started 139761893226240)>']
[2025-06-03 07:15:34] 2025-06-03 03:51:04,793 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 07:15:34] 2025-06-03 03:51:04,794 | INFO     | [monitor] control thread has ended
[2025-06-03 07:15:34] 2025-06-03 03:51:09,202 | INFO     | all workflow threads have been joined
[2025-06-03 07:15:34] 2025-06-03 03:51:09,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 07:15:34] 2025-06-03 03:51:09,203 | INFO     | traces error code: 0
[2025-06-03 07:15:34] 2025-06-03 03:51:09,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 07:15:34] 2025-06-03 03:51:09,512 [wrapper] ==== pilot stdout END ====
[2025-06-03 07:15:34] 2025-06-03 03:51:09,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 07:15:34] 2025-06-03 03:51:09,620 [wrapper] pilotpid: 30418
[2025-06-03 07:15:34] 2025-06-03 03:51:09,714 [wrapper] Pilot exit status: 0
[2025-06-03 07:15:34] 2025-06-03 03:51:10,238 [wrapper] pandaids: 6677390072
[2025-06-03 07:15:34] 2025-06-03 03:51:10,735 [wrapper] cleanup supervisor_pilot 18061 30419
[2025-06-03 07:15:34] 2025-06-03 03:51:10,767 [wrapper] Test setup, not cleaning
[2025-06-03 07:15:34] 2025-06-03 03:51:10,794 [wrapper] apfmon messages muted
[2025-06-03 07:15:34] 2025-06-03 03:51:10,825 [wrapper] ==== wrapper stdout END ====
[2025-06-03 07:15:34] 2025-06-03 03:51:10,851 [wrapper] ==== wrapper stderr END ====
[2025-06-03 07:15:34]  *** Error codes and diagnostics ***
[2025-06-03 07:15:34]     "exeErrorCode": 0,
[2025-06-03 07:15:34]     "exeErrorDiag": "",
[2025-06-03 07:15:34]     "pilotErrorCode": 0,
[2025-06-03 07:15:34]     "pilotErrorDiag": "",
[2025-06-03 07:15:34]  *** Listing of results directory ***
[2025-06-03 07:15:34] total 394036
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:47 pilot3.tar.gz
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:52 queuedata.json
[2025-06-03 07:15:34] -rwx------. 1 boinc boinc     37140 Jun  2 19:54 runpilot2-wrapper.sh
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc       100 Jun  3 02:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 07:15:34] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 02:31 run_atlas
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc       105 Jun  3 02:31 job.xml
[2025-06-03 07:15:34] -rw-r--r--. 2 boinc boinc 217282087 Jun  3 02:31 EVNT.45006593._000256.pool.root.1
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc      6392 Jun  3 02:31 init_data.xml
[2025-06-03 07:15:34] -rw-r--r--. 2 boinc boinc     15093 Jun  3 02:31 start_atlas.sh
[2025-06-03 07:15:34] drwxrwx--x. 2 boinc boinc        68 Jun  3 02:31 shared
[2025-06-03 07:15:34] -rw-r--r--. 2 boinc boinc    508874 Jun  3 02:31 input.tar.gz
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc         0 Jun  3 02:31 boinc_lockfile
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc      2520 Jun  3 02:31 pandaJob.out
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc    988081 Jun  3 02:32 agis_schedconf.cvmfs.json
[2025-06-03 07:15:34] drwx------. 4 boinc boinc      4096 Jun  3 02:32 pilot3
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc 179604923 Jun  3 05:48 HITS.45006595._006379.pool.root.1
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:48 boinc_task_state.xml
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc      1019 Jun  3 05:49 memory_monitor_summary.json
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc   1603667 Jun  3 05:49 agis_ddmendpoints.agis.ALL.json
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc    353834 Jun  3 05:49 log.45006595._006379.job.log.tgz.1
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc        95 Jun  3 05:49 pilot_heartbeat.json
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc      7691 Jun  3 05:50 heartbeat.json
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc      4416 Jun  3 05:51 pilotlog.txt
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc   1035270 Jun  3 05:51 log.45006595._006379.job.log.1
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc       357 Jun  3 05:51 output.list
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:51 runtime_log
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc   1413120 Jun  3 05:51 result.tar.gz
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc      8659 Jun  3 05:51 runtime_log.err
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc       656 Jun  3 05:51 L9yNDmzXOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmorfKDmBNtexm.diag
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc      8192 Jun  3 07:15 boinc_mmap_file
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc        28 Jun  3 07:15 wrapper_checkpoint.txt
[2025-06-03 07:15:34] -rw-r--r--. 1 boinc boinc     20482 Jun  3 07:15 stderr.txt
[2025-06-03 07:15:34] HITS file was successfully produced:
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc 179604923 Jun  3 05:48 shared/HITS.pool.root.1
[2025-06-03 07:15:34]  *** Contents of shared directory: ***
[2025-06-03 07:15:34] total 389484
[2025-06-03 07:15:34] -rw-r--r--. 2 boinc boinc 217282087 Jun  3 02:31 ATLAS.root_0
[2025-06-03 07:15:34] -rw-r--r--. 2 boinc boinc     15093 Jun  3 02:31 start_atlas.sh
[2025-06-03 07:15:34] -rw-r--r--. 2 boinc boinc    508874 Jun  3 02:31 input.tar.gz
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc 179604923 Jun  3 05:48 HITS.pool.root.1
[2025-06-03 07:15:34] -rw-------. 1 boinc boinc   1413120 Jun  3 05:51 result.tar.gz
07:15:36 (24391): run_atlas exited; CPU time 45118.505898
07:15:36 (24391): called boinc_finish(0)

</stderr_txt>
]]>

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