Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:38:23 (18437): wrapper (7.7.26015): starting
05:38:23 (18437): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 05:38:23] Arguments: --nthreads 8
[2025-06-03 05:38:23] Threads: 8
[2025-06-03 05:38:23] Checking for CVMFS
[2025-06-03 05:38:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 05:38:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 05:38:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 05:38:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 05:38:25] 2.11.2.0 896 31226 89892 146724 1 16 19956477 25165825 4636 130560 0 15247410 99.792 18112608 2312 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 05:38:25] CVMFS is ok
[2025-06-03 05:38:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 05:38:25] Checking for apptainer binary...
[2025-06-03 05:38:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 05:38:25] Running /usr/bin/apptainer --version
[2025-06-03 05:38:26] apptainer version 1.3.2-1.el7
[2025-06-03 05:38:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 05:43:31] cg-vwn277.simple-grid.lan
[2025-06-03 05:43:31] apptainer works
[2025-06-03 05:43:31] Set ATHENA_PROC_NUMBER=8
[2025-06-03 05:43:31] Set ATHENA_CORE_NUMBER=8
[2025-06-03 05:43:31] Starting ATLAS job with PandaID=6677390175
[2025-06-03 05:43:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 10:03:04]  *** The last 200 lines of the pilot log: ***
[2025-06-03 10:03:04] 2025-06-03 07:46:51,131 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 10:03:04] 2025-06-03 07:46:51,131 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 10:03:04] 2025-06-03 07:46:51,131 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 10:03:04] 2025-06-03 07:46:51,131 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 10:03:04] 2025-06-03 07:46:51,136 | INFO     | fitting pss+swap vs Time
[2025-06-03 10:03:04] 2025-06-03 07:46:51,137 | INFO     | sum of square deviations: 3627000098.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,139 | INFO     | sum of deviations: 94059050101.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,139 | INFO     | mean x: 1748929782.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,139 | INFO     | mean y: 2417699.5814977973
[2025-06-03 10:03:04] 2025-06-03 07:46:51,139 | INFO     | -- intersect: -45352605609.89651
[2025-06-03 10:03:04] 2025-06-03 07:46:51,139 | INFO     | intersect: -45352605609.89651
[2025-06-03 10:03:04] 2025-06-03 07:46:51,140 | INFO     | chi2: 6.493001115519434
[2025-06-03 10:03:04] 2025-06-03 07:46:51,140 | INFO     | sum of square deviations: 3392567795.5
[2025-06-03 10:03:04] 2025-06-03 07:46:51,142 | INFO     | sum of deviations: 106613509266.99998
[2025-06-03 10:03:04] 2025-06-03 07:46:51,142 | INFO     | mean x: 1748929629.5
[2025-06-03 10:03:04] 2025-06-03 07:46:51,142 | INFO     | mean y: 2425691.6306306305
[2025-06-03 10:03:04] 2025-06-03 07:46:51,142 | INFO     | -- intersect: -54958753126.77188
[2025-06-03 10:03:04] 2025-06-03 07:46:51,142 | INFO     | intersect: -54958753126.77188
[2025-06-03 10:03:04] 2025-06-03 07:46:51,143 | INFO     | chi2: 5.773573873607599
[2025-06-03 10:03:04] 2025-06-03 07:46:51,143 | INFO     | current chi2=5.773573873607599 (change=11.080041865267425 %)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,143 | INFO     | right removable region: 221
[2025-06-03 10:03:04] 2025-06-03 07:46:51,143 | INFO     | sum of square deviations: 3392567795.5
[2025-06-03 10:03:04] 2025-06-03 07:46:51,145 | INFO     | sum of deviations: 16082435798.5
[2025-06-03 10:03:04] 2025-06-03 07:46:51,145 | INFO     | mean x: 1748929934.5
[2025-06-03 10:03:04] 2025-06-03 07:46:51,146 | INFO     | mean y: 2468381.581081081
[2025-06-03 10:03:04] 2025-06-03 07:46:51,146 | INFO     | -- intersect: -8288317560.848601
[2025-06-03 10:03:04] 2025-06-03 07:46:51,146 | INFO     | intersect: -8288317560.848601
[2025-06-03 10:03:04] 2025-06-03 07:46:51,146 | INFO     | chi2: 1.726206661203524
[2025-06-03 10:03:04] 2025-06-03 07:46:51,146 | INFO     | current chi2=1.726206661203524 (change=73.41434830378233 %)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,147 | INFO     | sum of square deviations: 3168461268.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,148 | INFO     | sum of deviations: -13821303811.000004
[2025-06-03 10:03:04] 2025-06-03 07:46:51,148 | INFO     | mean x: 1748930087.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,149 | INFO     | mean y: 2488581.0368663594
[2025-06-03 10:03:04] 2025-06-03 07:46:51,149 | INFO     | -- intersect: 7631584230.95272
[2025-06-03 10:03:04] 2025-06-03 07:46:51,149 | INFO     | intersect: 7631584230.95272
[2025-06-03 10:03:04] 2025-06-03 07:46:51,149 | INFO     | chi2: 0.8447592803288644
[2025-06-03 10:03:04] 2025-06-03 07:46:51,149 | INFO     | current chi2=0.8447592803288644 (change=51.062679845071855 %)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,150 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,151 | INFO     | sum of deviations: -7531904819.499993
[2025-06-03 10:03:04] 2025-06-03 07:46:51,151 | INFO     | mean x: 1748930239.5
[2025-06-03 10:03:04] 2025-06-03 07:46:51,151 | INFO     | mean y: 2484087.6745283017
[2025-06-03 10:03:04] 2025-06-03 07:46:51,151 | INFO     | -- intersect: 4461109289.206155
[2025-06-03 10:03:04] 2025-06-03 07:46:51,152 | INFO     | intersect: 4461109289.206155
[2025-06-03 10:03:04] 2025-06-03 07:46:51,152 | INFO     | chi2: 0.8159680514947711
[2025-06-03 10:03:04] 2025-06-03 07:46:51,152 | INFO     | current chi2=0.8159680514947711 (change=3.408216932862203 %)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,152 | INFO     | left removable region: 30
[2025-06-03 10:03:04] 2025-06-03 07:46:51,153 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,154 | INFO     | sum of deviations: 5668576218.999999
[2025-06-03 10:03:04] 2025-06-03 07:46:51,154 | INFO     | mean x: 1748930514.0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,154 | INFO     | mean y: 2494852.5811518324
[2025-06-03 10:03:04] 2025-06-03 07:46:51,154 | INFO     | -- intersect: -4586102230.01042
[2025-06-03 10:03:04] 2025-06-03 07:46:51,154 | INFO     | intersect: -4586102230.01042
[2025-06-03 10:03:04] 2025-06-03 07:46:51,155 | INFO     | chi2: 0.000268408313141956
[2025-06-03 10:03:04] 2025-06-03 07:46:51,155 | INFO     | -- intersect: -4586102230.01042
[2025-06-03 10:03:04] 2025-06-03 07:46:51,155 | INFO     | current memory leak: 2.62 B/s (using 191 data points, chi2=0.00)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,156 | INFO     | ..............................
[2025-06-03 10:03:04] 2025-06-03 07:46:51,156 | INFO     | . Timing measurements:
[2025-06-03 10:03:04] 2025-06-03 07:46:51,156 | INFO     | . get job = 0 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,156 | INFO     | . initial setup = 6 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,156 | INFO     | . payload setup = 157 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,156 | INFO     | . stage-in = 0 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,157 | INFO     | . payload execution = 13968 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,157 | INFO     | . stage-out = 4 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,157 | INFO     | . log creation = 1 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,157 | INFO     | ..............................
[2025-06-03 10:03:04] 2025-06-03 07:46:51,292 | INFO     | 
[2025-06-03 10:03:04] 2025-06-03 07:46:51,292 | INFO     | job summary report
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | --------------------------------------------------
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | PanDA job id: 6677390175
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | task id: 45006595
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | errors: (none)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | pilot state: finished 
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | transexitcode: 0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | exeerrorcode: 0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,293 | INFO     | exeerrordiag: 
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | exitcode: 0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | exitmsg: OK
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | cpuconsumptiontime: 51563 s
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | nevents: 400
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | neventsw: 0
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | pid: 1371
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | pgrp: 1371
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | corecount: 8
[2025-06-03 10:03:04] 2025-06-03 07:46:51,294 | INFO     | event service: False
[2025-06-03 10:03:04] 2025-06-03 07:46:51,295 | INFO     | sizes: {0: 2404950, 1: 2405205, 12: 2405205, 23: 2405233, 34: 2405261, 44: 2405289, 55: 2405445, 66: 2405473, 77: 2405501, 87: 2405557, 93: 2405791, 98: 2406099, 1
[2025-06-03 10:03:04] 2025-06-03 07:46:51,295 | INFO     | --------------------------------------------------
[2025-06-03 10:03:04] 2025-06-03 07:46:51,295 | INFO     | 
[2025-06-03 10:03:04] 2025-06-03 07:46:51,295 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 10:03:04] 2025-06-03 07:46:51,419 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,419 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,419 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,419 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,420 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,421 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,421 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,421 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 10:03:04] 2025-06-03 07:46:51,421 | INFO     | job 6677390175 has completed (purged errors)
[2025-06-03 10:03:04] 2025-06-03 07:46:51,421 | INFO     | overall cleanup function is called
[2025-06-03 10:03:04] 2025-06-03 07:46:52,430 | INFO     | --- collectZombieJob: --- 10, [1371]
[2025-06-03 10:03:04] 2025-06-03 07:46:52,430 | INFO     | zombie collector waiting for pid 1371
[2025-06-03 10:03:04] 2025-06-03 07:46:52,431 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 10:03:04] 2025-06-03 07:46:52,431 | INFO     | collected zombie processes
[2025-06-03 10:03:04] 2025-06-03 07:46:52,431 | INFO     | will attempt to kill all subprocesses of pid=1371
[2025-06-03 10:03:04] 2025-06-03 07:46:52,575 | INFO     | process IDs to be killed: [1371] (in reverse order)
[2025-06-03 10:03:04] 2025-06-03 07:46:53,411 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 10:03:04] 2025-06-03 07:46:53,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 10:03:04] 2025-06-03 07:46:53,415 | INFO     | did not find any defunct processes belonging to 1371
[2025-06-03 10:03:04] 2025-06-03 07:46:53,418 | INFO     | did not find any defunct processes belonging to 1371
[2025-06-03 10:03:04] 2025-06-03 07:46:53,419 | INFO     | ready for new job
[2025-06-03 10:03:04] 2025-06-03 07:46:53,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 10:03:04] 2025-06-03 07:46:53,421 | INFO     | **************************************
[2025-06-03 10:03:04] 2025-06-03 07:46:53,421 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 10:03:04] 2025-06-03 07:46:53,421 | INFO     | **************************************
[2025-06-03 10:03:04] 2025-06-03 07:46:53,421 | INFO     | 
[2025-06-03 10:03:04] 2025-06-03 07:46:53,422 | INFO     | pilot is running in a VM
[2025-06-03 10:03:04] 2025-06-03 07:46:53,422 | INFO     | architecture information:
[2025-06-03 10:03:04] 2025-06-03 07:46:53,446 | INFO     | executing command: cat /etc/os-release
[2025-06-03 10:03:04] 2025-06-03 07:46:53,543 | INFO     | 14428s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-03 10:03:04] 2025-06-03 07:46:53,641 | INFO     | cat /etc/os-release:
[2025-06-03 10:03:04] NAME="CentOS Linux"
[2025-06-03 10:03:04] VERSION="7 (Core)"
[2025-06-03 10:03:04] ID="centos"
[2025-06-03 10:03:04] ID_LIKE="rhel fedora"
[2025-06-03 10:03:04] VERSION_ID="7"
[2025-06-03 10:03:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 10:03:04] ANSI_COLOR="0;31"
[2025-06-03 10:03:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 10:03:04] HOME_URL="https://www.centos.org/"
[2025-06-03 10:03:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 10:03:04] 
[2025-06-03 10:03:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 10:03:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 10:03:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 10:03:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 10:03:04] 
[2025-06-03 10:03:04] 2025-06-03 07:46:53,642 | INFO     | **************************************
[2025-06-03 10:03:04] 2025-06-03 07:46:54,145 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 10:03:04] 2025-06-03 07:46:54,457 | INFO     | sufficient remaining disk space (496778608640 B)
[2025-06-03 10:03:04] 2025-06-03 07:46:54,457 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 10:03:04] 2025-06-03 07:46:54,458 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 10:03:04] 2025-06-03 07:46:54,458 | INFO     | update_server=False
[2025-06-03 10:03:04] 2025-06-03 07:46:54,458 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 10:03:04] 2025-06-03 07:46:54,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 10:03:04] 2025-06-03 07:46:54,459 | INFO     | aborting loop
[2025-06-03 10:03:04] 2025-06-03 07:46:54,539 | INFO     | all payload control threads have been joined
[2025-06-03 10:03:04] 2025-06-03 07:46:54,549 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 10:03:04] 2025-06-03 07:46:54,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 10:03:04] 2025-06-03 07:46:54,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 10:03:04] 2025-06-03 07:46:54,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 10:03:04] 2025-06-03 07:46:55,324 | INFO     | all data control threads have been joined
[2025-06-03 10:03:04] 2025-06-03 07:46:55,464 | INFO     | [job] retrieve thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:55,465 | INFO     | [job] job monitor thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:55,474 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:55,545 | INFO     | [payload] control thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:55,675 | INFO     | [data] copytool_in thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:55,810 | INFO     | all job control threads have been joined
[2025-06-03 10:03:04] 2025-06-03 07:46:55,922 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:56,170 | INFO     | [payload] failed_post thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:56,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 10:03:04] 2025-06-03 07:46:56,329 | INFO     | [data] control thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:56,775 | INFO     | [data] copytool_out thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:56,816 | INFO     | [job] control thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:56,820 | INFO     | [payload] validate_post thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:56,933 | INFO     | [job] validate thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:56,944 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:57,315 | INFO     | [job] queue monitor thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:46:57,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 10:03:04] 2025-06-03 07:47:01,501 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:47:04,613 | INFO     | job.realtimelogging is not enabled
[2025-06-03 10:03:04] 2025-06-03 07:47:05,618 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 10:03:04] 2025-06-03 07:47:05,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140662940235584)>', '<ExcThread(monitor, started 140662502573824)>']
[2025-06-03 10:03:04] 2025-06-03 07:47:06,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 10:03:04] 2025-06-03 07:47:06,621 | INFO     | [monitor] control thread has ended
[2025-06-03 10:03:04] 2025-06-03 07:47:10,915 | INFO     | all workflow threads have been joined
[2025-06-03 10:03:04] 2025-06-03 07:47:10,915 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 10:03:04] 2025-06-03 07:47:10,916 | INFO     | traces error code: 0
[2025-06-03 10:03:04] 2025-06-03 07:47:10,916 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 10:03:04] 2025-06-03 07:47:11,188 [wrapper] ==== pilot stdout END ====
[2025-06-03 10:03:04] 2025-06-03 07:47:11,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 10:03:04] 2025-06-03 07:47:11,274 [wrapper] pilotpid: 27140
[2025-06-03 10:03:04] 2025-06-03 07:47:11,316 [wrapper] Pilot exit status: 0
[2025-06-03 10:03:04] 2025-06-03 07:47:11,661 [wrapper] pandaids: 6677390175
[2025-06-03 10:03:04] 2025-06-03 07:47:12,279 [wrapper] cleanup supervisor_pilot  9061 27141
[2025-06-03 10:03:04] 2025-06-03 07:47:12,359 [wrapper] Test setup, not cleaning
[2025-06-03 10:03:04] 2025-06-03 07:47:12,406 [wrapper] apfmon messages muted
[2025-06-03 10:03:04] 2025-06-03 07:47:12,496 [wrapper] ==== wrapper stdout END ====
[2025-06-03 10:03:04] 2025-06-03 07:47:12,581 [wrapper] ==== wrapper stderr END ====
[2025-06-03 10:03:04]  *** Error codes and diagnostics ***
[2025-06-03 10:03:04]     "exeErrorCode": 0,
[2025-06-03 10:03:04]     "exeErrorDiag": "",
[2025-06-03 10:03:04]     "pilotErrorCode": 0,
[2025-06-03 10:03:04]     "pilotErrorDiag": "",
[2025-06-03 10:03:04]  *** Listing of results directory ***
[2025-06-03 10:03:04] total 400108
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:47 pilot3.tar.gz
[2025-06-03 10:03:04] -rwx------. 1 boinc boinc     37140 Jun  2 19:57 runpilot2-wrapper.sh
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:57 queuedata.json
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc       100 Jun  3 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 10:03:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 05:38 run_atlas
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc       105 Jun  3 05:38 job.xml
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc      6390 Jun  3 05:38 init_data.xml
[2025-06-03 10:03:04] -rw-r--r--. 2 boinc boinc 215348627 Jun  3 05:38 EVNT.45006593._000260.pool.root.1
[2025-06-03 10:03:04] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:38 start_atlas.sh
[2025-06-03 10:03:04] drwxrwx--x. 2 boinc boinc        68 Jun  3 05:38 shared
[2025-06-03 10:03:04] -rw-r--r--. 2 boinc boinc    508869 Jun  3 05:38 input.tar.gz
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc         0 Jun  3 05:38 boinc_lockfile
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc      2521 Jun  3 05:43 pandaJob.out
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc    988073 Jun  3 05:46 agis_schedconf.cvmfs.json
[2025-06-03 10:03:04] drwx------. 4 boinc boinc      4096 Jun  3 05:46 pilot3
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc 187317439 Jun  3 09:44 HITS.45006595._006482.pool.root.1
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc       531 Jun  3 09:44 boinc_task_state.xml
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc      1017 Jun  3 09:45 memory_monitor_summary.json
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc   1603667 Jun  3 09:45 agis_ddmendpoints.agis.ALL.json
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc    377927 Jun  3 09:45 log.45006595._006482.job.log.tgz.1
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc        95 Jun  3 09:46 pilot_heartbeat.json
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc      7687 Jun  3 09:46 heartbeat.json
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc      4604 Jun  3 09:47 pilotlog.txt
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc   1232874 Jun  3 09:47 log.45006595._006482.job.log.1
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc       357 Jun  3 09:47 output.list
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc       620 Jun  3 09:47 runtime_log
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc   1628160 Jun  3 09:47 result.tar.gz
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc       657 Jun  3 09:47 V5sLDmlaOg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm54VKDmn4Ry5m.diag
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc      8659 Jun  3 09:47 runtime_log.err
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc      8192 Jun  3 10:03 boinc_mmap_file
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc        28 Jun  3 10:03 wrapper_checkpoint.txt
[2025-06-03 10:03:04] -rw-r--r--. 1 boinc boinc     20484 Jun  3 10:03 stderr.txt
[2025-06-03 10:03:04] HITS file was successfully produced:
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc 187317439 Jun  3 09:44 shared/HITS.pool.root.1
[2025-06-03 10:03:04]  *** Contents of shared directory: ***
[2025-06-03 10:03:04] total 395340
[2025-06-03 10:03:04] -rw-r--r--. 2 boinc boinc 215348627 Jun  3 05:38 ATLAS.root_0
[2025-06-03 10:03:04] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:38 start_atlas.sh
[2025-06-03 10:03:04] -rw-r--r--. 2 boinc boinc    508869 Jun  3 05:38 input.tar.gz
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc 187317439 Jun  3 09:44 HITS.pool.root.1
[2025-06-03 10:03:04] -rw-------. 1 boinc boinc   1628160 Jun  3 09:47 result.tar.gz
10:03:06 (18437): run_atlas exited; CPU time 51763.123650
10:03:06 (18437): called boinc_finish(0)

</stderr_txt>
]]>

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