Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:32:13 (4537): wrapper (7.7.26015): starting
01:32:13 (4537): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 01:32:13] Arguments: --nthreads 8
[2025-06-03 01:32:13] Threads: 8
[2025-06-03 01:32:13] Checking for CVMFS
[2025-06-03 01:32:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 01:32:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 01:32:13] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 01:32:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 01:32:14] 2.11.2.0 14868 31119 100884 146722 2 114 24796515 25165825 4353 130560 0 15667156 99.766 19315800 2589 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 01:32:14] CVMFS is ok
[2025-06-03 01:32:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 01:32:14] Checking for apptainer binary...
[2025-06-03 01:32:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 01:32:14] Running /usr/bin/apptainer --version
[2025-06-03 01:32:14] apptainer version 1.3.2-1.el7
[2025-06-03 01:32:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 01:32:16] cg-vwn478.simple-grid.lan
[2025-06-03 01:32:16] apptainer works
[2025-06-03 01:32:16] Set ATHENA_PROC_NUMBER=8
[2025-06-03 01:32:16] Set ATHENA_CORE_NUMBER=8
[2025-06-03 01:32:16] Starting ATLAS job with PandaID=6677388890
[2025-06-03 01:32:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:04:10]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:04:10] 2025-06-03 02:54:01,725 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:04:10] 2025-06-03 02:54:01,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:04:10] 2025-06-03 02:54:01,725 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:04:10] 2025-06-03 02:54:01,725 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:04:10] 2025-06-03 02:54:01,729 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:04:10] 2025-06-03 02:54:01,730 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,731 | INFO     | sum of deviations: -4208230027.499983
[2025-06-03 05:04:10] 2025-06-03 02:54:01,732 | INFO     | mean x: 1748913155.5
[2025-06-03 05:04:10] 2025-06-03 02:54:01,732 | INFO     | mean y: 2483671.8316326533
[2025-06-03 05:04:10] 2025-06-03 02:54:01,732 | INFO     | -- intersect: 3154818807.5529976
[2025-06-03 05:04:10] 2025-06-03 02:54:01,732 | INFO     | intersect: 3154818807.5529976
[2025-06-03 05:04:10] 2025-06-03 02:54:01,732 | INFO     | chi2: 2.725973057002248
[2025-06-03 05:04:10] 2025-06-03 02:54:01,733 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,734 | INFO     | sum of deviations: 8781151910.000004
[2025-06-03 05:04:10] 2025-06-03 02:54:01,734 | INFO     | mean x: 1748913003.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,735 | INFO     | mean y: 2494810.7486910997
[2025-06-03 05:04:10] 2025-06-03 02:54:01,735 | INFO     | -- intersect: -7105597776.850804
[2025-06-03 05:04:10] 2025-06-03 02:54:01,735 | INFO     | intersect: -7105597776.850804
[2025-06-03 05:04:10] 2025-06-03 02:54:01,735 | INFO     | chi2: 1.9585721198843085
[2025-06-03 05:04:10] 2025-06-03 02:54:01,735 | INFO     | current chi2=1.9585721198843085 (change=28.151449815202877 %)
[2025-06-03 05:04:10] 2025-06-03 02:54:01,736 | INFO     | sum of square deviations: 1995283922.5
[2025-06-03 05:04:10] 2025-06-03 02:54:01,737 | INFO     | sum of deviations: 8561312454.499996
[2025-06-03 05:04:10] 2025-06-03 02:54:01,737 | INFO     | mean x: 1748912850.5
[2025-06-03 05:04:10] 2025-06-03 02:54:01,738 | INFO     | mean y: 2494607.85483871
[2025-06-03 05:04:10] 2025-06-03 02:54:01,738 | INFO     | -- intersect: -7501695247.020684
[2025-06-03 05:04:10] 2025-06-03 02:54:01,738 | INFO     | intersect: -7501695247.020684
[2025-06-03 05:04:10] 2025-06-03 02:54:01,738 | INFO     | chi2: 1.9596414117332142
[2025-06-03 05:04:10] 2025-06-03 02:54:01,738 | INFO     | current chi2=1.9596414117332142 (change=-0.05459547994427993 %)
[2025-06-03 05:04:10] 2025-06-03 02:54:01,738 | INFO     | right removable region: 185
[2025-06-03 05:04:10] 2025-06-03 02:54:01,739 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,740 | INFO     | sum of deviations: -38531515956.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,740 | INFO     | mean x: 1748913308.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,740 | INFO     | mean y: 2513411.0366492146
[2025-06-03 05:04:10] 2025-06-03 02:54:01,740 | INFO     | -- intersect: 31192684532.882984
[2025-06-03 05:04:10] 2025-06-03 02:54:01,741 | INFO     | intersect: 31192684532.882984
[2025-06-03 05:04:10] 2025-06-03 02:54:01,741 | INFO     | chi2: 0.9612996860452251
[2025-06-03 05:04:10] 2025-06-03 02:54:01,741 | INFO     | current chi2=0.9612996860452251 (change=64.73553971577525 %)
[2025-06-03 05:04:10] 2025-06-03 02:54:01,741 | INFO     | sum of square deviations: 1995283922.5
[2025-06-03 05:04:10] 2025-06-03 02:54:01,743 | INFO     | sum of deviations: -34714397493.5
[2025-06-03 05:04:10] 2025-06-03 02:54:01,743 | INFO     | mean x: 1748913460.5
[2025-06-03 05:04:10] 2025-06-03 02:54:01,743 | INFO     | mean y: 2509852.3279569894
[2025-06-03 05:04:10] 2025-06-03 02:54:01,743 | INFO     | -- intersect: 30430498754.007492
[2025-06-03 05:04:10] 2025-06-03 02:54:01,743 | INFO     | intersect: 30430498754.007492
[2025-06-03 05:04:10] 2025-06-03 02:54:01,744 | INFO     | chi2: 0.9493953342133221
[2025-06-03 05:04:10] 2025-06-03 02:54:01,744 | INFO     | current chi2=0.9493953342133221 (change=1.2383601081653657 %)
[2025-06-03 05:04:10] 2025-06-03 02:54:01,744 | INFO     | left removable region: 20
[2025-06-03 05:04:10] 2025-06-03 02:54:01,744 | INFO     | sum of square deviations: 1392881930.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,745 | INFO     | sum of deviations: -9016124092.999996
[2025-06-03 05:04:10] 2025-06-03 02:54:01,745 | INFO     | mean x: 1748913430.0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,746 | INFO     | mean y: 2509423.9393939395
[2025-06-03 05:04:10] 2025-06-03 02:54:01,746 | INFO     | -- intersect: 11323225252.878508
[2025-06-03 05:04:10] 2025-06-03 02:54:01,746 | INFO     | intersect: 11323225252.878508
[2025-06-03 05:04:10] 2025-06-03 02:54:01,746 | INFO     | chi2: 0.10111201063770829
[2025-06-03 05:04:10] 2025-06-03 02:54:01,746 | INFO     | -- intersect: 11323225252.878508
[2025-06-03 05:04:10] 2025-06-03 02:54:01,746 | INFO     | current memory leak: -6.47 B/s (using 165 data points, chi2=0.10)
[2025-06-03 05:04:10] 2025-06-03 02:54:01,747 | INFO     | ..............................
[2025-06-03 05:04:10] 2025-06-03 02:54:01,747 | INFO     | . Timing measurements:
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | . get job = 0 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | . initial setup = 2 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | . payload setup = 13 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | . stage-in = 0 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | . payload execution = 11953 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | . stage-out = 3 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | . log creation = 1 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,748 | INFO     | ..............................
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | 
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | job summary report
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | --------------------------------------------------
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | PanDA job id: 6677388890
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | task id: 45006595
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | errors: (none)
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:04:10] 2025-06-03 02:54:01,909 | INFO     | pilot state: finished 
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | transexitcode: 0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | exeerrorcode: 0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | exeerrordiag: 
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | exitcode: 0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | exitmsg: OK
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | cpuconsumptiontime: 44939 s
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | nevents: 400
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | neventsw: 0
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | pid: 16834
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | pgrp: 16834
[2025-06-03 05:04:10] 2025-06-03 02:54:01,910 | INFO     | corecount: 8
[2025-06-03 05:04:10] 2025-06-03 02:54:01,911 | INFO     | event service: False
[2025-06-03 05:04:10] 2025-06-03 02:54:01,911 | INFO     | sizes: {0: 2404944, 1: 2405199, 9: 2405405, 12: 2405433, 11971: 2434358, 11977: 2443483, 12069: 2443597}
[2025-06-03 05:04:10] 2025-06-03 02:54:01,911 | INFO     | --------------------------------------------------
[2025-06-03 05:04:10] 2025-06-03 02:54:01,911 | INFO     | 
[2025-06-03 05:04:10] 2025-06-03 02:54:01,911 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-03 05:04:10] 2025-06-03 02:54:02,243 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,243 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,244 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | job 6677388890 has completed (purged errors)
[2025-06-03 05:04:10] 2025-06-03 02:54:02,245 | INFO     | overall cleanup function is called
[2025-06-03 05:04:10] 2025-06-03 02:54:03,254 | INFO     | --- collectZombieJob: --- 10, [16834]
[2025-06-03 05:04:10] 2025-06-03 02:54:03,254 | INFO     | zombie collector waiting for pid 16834
[2025-06-03 05:04:10] 2025-06-03 02:54:03,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:04:10] 2025-06-03 02:54:03,254 | INFO     | collected zombie processes
[2025-06-03 05:04:10] 2025-06-03 02:54:03,254 | INFO     | will attempt to kill all subprocesses of pid=16834
[2025-06-03 05:04:10] 2025-06-03 02:54:03,392 | INFO     | process IDs to be killed: [16834] (in reverse order)
[2025-06-03 05:04:10] 2025-06-03 02:54:03,964 | INFO     | PID=8223 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 05:04:10] 2025-06-03 02:54:03,964 | INFO     | .. there are 9 such processes running
[2025-06-03 05:04:10] 2025-06-03 02:54:04,032 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:04:10] 2025-06-03 02:54:04,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:04:10] 2025-06-03 02:54:04,035 | INFO     | did not find any defunct processes belonging to 16834
[2025-06-03 05:04:10] 2025-06-03 02:54:04,038 | INFO     | did not find any defunct processes belonging to 16834
[2025-06-03 05:04:10] 2025-06-03 02:54:04,039 | INFO     | ready for new job
[2025-06-03 05:04:10] 2025-06-03 02:54:04,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:04:10] 2025-06-03 02:54:04,040 | INFO     | **************************************
[2025-06-03 05:04:10] 2025-06-03 02:54:04,041 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:04:10] 2025-06-03 02:54:04,041 | INFO     | **************************************
[2025-06-03 05:04:10] 2025-06-03 02:54:04,041 | INFO     | 
[2025-06-03 05:04:10] 2025-06-03 02:54:04,041 | INFO     | pilot is running in a VM
[2025-06-03 05:04:10] 2025-06-03 02:54:04,041 | INFO     | architecture information:
[2025-06-03 05:04:10] 2025-06-03 02:54:04,046 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:04:10] 2025-06-03 02:54:04,258 | INFO     | cat /etc/os-release:
[2025-06-03 05:04:10] NAME="CentOS Linux"
[2025-06-03 05:04:10] VERSION="7 (Core)"
[2025-06-03 05:04:10] ID="centos"
[2025-06-03 05:04:10] ID_LIKE="rhel fedora"
[2025-06-03 05:04:10] VERSION_ID="7"
[2025-06-03 05:04:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:04:10] ANSI_COLOR="0;31"
[2025-06-03 05:04:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:04:10] HOME_URL="https://www.centos.org/"
[2025-06-03 05:04:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:04:10] 
[2025-06-03 05:04:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:04:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:04:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:04:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:04:10] 
[2025-06-03 05:04:10] 2025-06-03 02:54:04,258 | INFO     | **************************************
[2025-06-03 05:04:10] 2025-06-03 02:54:04,762 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-03 05:04:10] 2025-06-03 02:54:05,075 | INFO     | sufficient remaining disk space (496778608640 B)
[2025-06-03 05:04:10] 2025-06-03 02:54:05,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:04:10] 2025-06-03 02:54:05,076 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:04:10] 2025-06-03 02:54:05,076 | INFO     | update_server=False
[2025-06-03 05:04:10] 2025-06-03 02:54:05,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:04:10] 2025-06-03 02:54:05,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:04:10] 2025-06-03 02:54:05,238 | INFO     | aborting loop
[2025-06-03 05:04:10] 2025-06-03 02:54:05,572 | INFO     | all data control threads have been joined
[2025-06-03 05:04:10] 2025-06-03 02:54:05,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:04:10] 2025-06-03 02:54:05,974 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:04:10] 2025-06-03 02:54:05,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:04:10] 2025-06-03 02:54:05,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:04:10] 2025-06-03 02:54:06,083 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:06,170 | INFO     | all payload control threads have been joined
[2025-06-03 05:04:10] 2025-06-03 02:54:06,244 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:06,307 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:06,343 | INFO     | all job control threads have been joined
[2025-06-03 05:04:10] 2025-06-03 02:54:06,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:04:10] 2025-06-03 02:54:06,380 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:06,579 | INFO     | [data] control thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:06,596 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:06,799 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:06,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:04:10] 2025-06-03 02:54:07,029 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:07,070 | INFO     | [job] validate thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:07,074 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:07,177 | INFO     | [payload] control thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:07,350 | INFO     | [job] control thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:07,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:07,827 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:07,929 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:10,378 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:04:10] 2025-06-03 02:54:11,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329717540672)>', '<ExcThread(monitor, started 140329416103680)>']
[2025-06-03 05:04:10] 2025-06-03 02:54:12,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:04:10] 2025-06-03 02:54:12,009 | INFO     | [monitor] control thread has ended
[2025-06-03 05:04:10] 2025-06-03 02:54:16,937 | INFO     | all workflow threads have been joined
[2025-06-03 05:04:10] 2025-06-03 02:54:16,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:04:10] 2025-06-03 02:54:16,938 | INFO     | traces error code: 0
[2025-06-03 05:04:10] 2025-06-03 02:54:16,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:04:10] 2025-06-03 02:54:17,305 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:04:10] 2025-06-03 02:54:17,321 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:04:10] 2025-06-03 02:54:17,329 [wrapper] pilotpid: 8223
[2025-06-03 05:04:10] 2025-06-03 02:54:17,345 [wrapper] Pilot exit status: 0
[2025-06-03 05:04:10] 2025-06-03 02:54:17,611 [wrapper] pandaids: 6677388890
[2025-06-03 05:04:10] 2025-06-03 02:54:18,487 [wrapper] cleanup supervisor_pilot 16060 8224
[2025-06-03 05:04:10] 2025-06-03 02:54:18,519 [wrapper] Test setup, not cleaning
[2025-06-03 05:04:10] 2025-06-03 02:54:18,565 [wrapper] apfmon messages muted
[2025-06-03 05:04:10] 2025-06-03 02:54:18,584 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:04:10] 2025-06-03 02:54:18,588 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:04:10]  *** Error codes and diagnostics ***
[2025-06-03 05:04:10]     "exeErrorCode": 0,
[2025-06-03 05:04:10]     "exeErrorDiag": "",
[2025-06-03 05:04:10]     "pilotErrorCode": 0,
[2025-06-03 05:04:10]     "pilotErrorDiag": "",
[2025-06-03 05:04:10]  *** Listing of results directory ***
[2025-06-03 05:04:10] total 394076
[2025-06-03 05:04:10] -rwx------. 1 boinc boinc     37140 Jun  2 19:47 runpilot2-wrapper.sh
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:47 queuedata.json
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:47 pilot3.tar.gz
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc       100 Jun  3 01:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:04:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 01:32 run_atlas
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc       105 Jun  3 01:32 job.xml
[2025-06-03 05:04:10] -rw-r--r--. 2 boinc boinc 217112680 Jun  3 01:32 EVNT.45006593._000250.pool.root.1
[2025-06-03 05:04:10] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:32 start_atlas.sh
[2025-06-03 05:04:10] drwxrwx--x. 2 boinc boinc        68 Jun  3 01:32 shared
[2025-06-03 05:04:10] -rw-r--r--. 2 boinc boinc    508867 Jun  3 01:32 input.tar.gz
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc      6392 Jun  3 01:32 init_data.xml
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc         0 Jun  3 01:32 boinc_lockfile
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc      2518 Jun  3 01:32 pandaJob.out
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc    988091 Jun  3 01:32 agis_schedconf.cvmfs.json
[2025-06-03 05:04:10] drwx------. 4 boinc boinc      4096 Jun  3 01:32 pilot3
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc 179784962 Jun  3 04:51 HITS.45006595._006228.pool.root.1
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc       531 Jun  3 04:51 boinc_task_state.xml
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc      1018 Jun  3 04:52 memory_monitor_summary.json
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc   1603667 Jun  3 04:52 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc    352664 Jun  3 04:52 log.45006595._006228.job.log.tgz.1
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc        95 Jun  3 04:53 pilot_heartbeat.json
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc      7682 Jun  3 04:54 heartbeat.json
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc      4416 Jun  3 04:54 pilotlog.txt
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc   1052460 Jun  3 04:54 log.45006595._006228.job.log.1
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc       357 Jun  3 04:54 output.list
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc       620 Jun  3 04:54 runtime_log
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc   1423360 Jun  3 04:54 result.tar.gz
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc      8659 Jun  3 04:54 runtime_log.err
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc       656 Jun  3 04:54 BePKDmzQOg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmX2VKDmPtDPNn.diag
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc      8192 Jun  3 05:04 boinc_mmap_file
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc        28 Jun  3 05:04 wrapper_checkpoint.txt
[2025-06-03 05:04:10] -rw-r--r--. 1 boinc boinc     20535 Jun  3 05:04 stderr.txt
[2025-06-03 05:04:10] HITS file was successfully produced:
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc 179784962 Jun  3 04:51 shared/HITS.pool.root.1
[2025-06-03 05:04:10]  *** Contents of shared directory: ***
[2025-06-03 05:04:10] total 389508
[2025-06-03 05:04:10] -rw-r--r--. 2 boinc boinc 217112680 Jun  3 01:32 ATLAS.root_0
[2025-06-03 05:04:10] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:32 start_atlas.sh
[2025-06-03 05:04:10] -rw-r--r--. 2 boinc boinc    508867 Jun  3 01:32 input.tar.gz
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc 179784962 Jun  3 04:51 HITS.pool.root.1
[2025-06-03 05:04:10] -rw-------. 1 boinc boinc   1423360 Jun  3 04:54 result.tar.gz
05:04:12 (4537): run_atlas exited; CPU time 45082.191537
05:04:12 (4537): called boinc_finish(0)

</stderr_txt>
]]>

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