Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:30:16 (29203): wrapper (7.7.26015): starting
05:30:16 (29203): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 05:30:16] Arguments: --nthreads 8
[2025-06-03 05:30:16] Threads: 8
[2025-06-03 05:30:16] Checking for CVMFS
[2025-06-03 05:30:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 05:30:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 05:30:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 05:30:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 05:30:18] 2.11.2.0 1304 31226 89236 146724 3 60 20319952 25165824 4636 130560 0 16546343 99.828 17251254 1954 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 05:30:18] CVMFS is ok
[2025-06-03 05:30:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 05:30:18] Checking for apptainer binary...
[2025-06-03 05:30:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 05:30:18] Running /usr/bin/apptainer --version
[2025-06-03 05:30:18] apptainer version 1.3.2-1.el7
[2025-06-03 05:30:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 05:30:27] cg-vwn245.simple-grid.lan
[2025-06-03 05:30:27] apptainer works
[2025-06-03 05:30:27] Set ATHENA_PROC_NUMBER=8
[2025-06-03 05:30:27] Set ATHENA_CORE_NUMBER=8
[2025-06-03 05:30:27] Starting ATLAS job with PandaID=6677388378
[2025-06-03 05:30:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:35:48]  *** The last 200 lines of the pilot log: ***
[2025-06-03 09:35:48] 2025-06-03 07:31:00,247 | INFO     | extracted standard info from prmon json
[2025-06-03 09:35:48] 2025-06-03 07:31:00,248 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 09:35:48] 2025-06-03 07:31:00,248 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 09:35:48] 2025-06-03 07:31:00,248 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 09:35:48] 2025-06-03 07:31:00,248 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 09:35:48] 2025-06-03 07:31:00,253 | INFO     | fitting pss+swap vs Time
[2025-06-03 09:35:48] 2025-06-03 07:31:00,254 | INFO     | sum of square deviations: 3438620752.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,256 | INFO     | sum of deviations: 96622149992.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,256 | INFO     | mean x: 1748928937.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,256 | INFO     | mean y: 2404286.66367713
[2025-06-03 09:35:48] 2025-06-03 07:31:00,256 | INFO     | -- intersect: -49140925630.680786
[2025-06-03 09:35:48] 2025-06-03 07:31:00,256 | INFO     | intersect: -49140925630.680786
[2025-06-03 09:35:48] 2025-06-03 07:31:00,257 | INFO     | chi2: 7.730180226637735
[2025-06-03 09:35:48] 2025-06-03 07:31:00,257 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 09:35:48] 2025-06-03 07:31:00,259 | INFO     | sum of deviations: 108866113546.00003
[2025-06-03 09:35:48] 2025-06-03 07:31:00,259 | INFO     | mean x: 1748928784.5
[2025-06-03 09:35:48] 2025-06-03 07:31:00,259 | INFO     | mean y: 2412362.752293578
[2025-06-03 09:35:48] 2025-06-03 07:31:00,259 | INFO     | -- intersect: -59266380020.311676
[2025-06-03 09:35:48] 2025-06-03 07:31:00,260 | INFO     | intersect: -59266380020.311676
[2025-06-03 09:35:48] 2025-06-03 07:31:00,260 | INFO     | chi2: 7.031107150984658
[2025-06-03 09:35:48] 2025-06-03 07:31:00,260 | INFO     | current chi2=7.031107150984658 (change=9.043425316839487 %)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,260 | INFO     | right removable region: 217
[2025-06-03 09:35:48] 2025-06-03 07:31:00,260 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 09:35:48] 2025-06-03 07:31:00,262 | INFO     | sum of deviations: 19754542773.5
[2025-06-03 09:35:48] 2025-06-03 07:31:00,262 | INFO     | mean x: 1748929089.5
[2025-06-03 09:35:48] 2025-06-03 07:31:00,262 | INFO     | mean y: 2456084.9036697247
[2025-06-03 09:35:48] 2025-06-03 07:31:00,262 | INFO     | -- intersect: -10752296338.161112
[2025-06-03 09:35:48] 2025-06-03 07:31:00,263 | INFO     | intersect: -10752296338.161112
[2025-06-03 09:35:48] 2025-06-03 07:31:00,263 | INFO     | chi2: 2.7143676042034537
[2025-06-03 09:35:48] 2025-06-03 07:31:00,263 | INFO     | current chi2=2.7143676042034537 (change=64.88610194559364 %)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,263 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,265 | INFO     | sum of deviations: -24958647028.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,265 | INFO     | mean x: 1748929242.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,265 | INFO     | mean y: 2487504.868544601
[2025-06-03 09:35:48] 2025-06-03 07:31:00,265 | INFO     | -- intersect: 14570007292.352093
[2025-06-03 09:35:48] 2025-06-03 07:31:00,265 | INFO     | intersect: 14570007292.352093
[2025-06-03 09:35:48] 2025-06-03 07:31:00,266 | INFO     | chi2: 0.9322183539525558
[2025-06-03 09:35:48] 2025-06-03 07:31:00,266 | INFO     | current chi2=0.9322183539525558 (change=65.65614942836305 %)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,266 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,274 | INFO     | sum of deviations: -25164817573.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,274 | INFO     | mean x: 1748929394.5
[2025-06-03 09:35:48] 2025-06-03 07:31:00,274 | INFO     | mean y: 2487600.019230769
[2025-06-03 09:35:48] 2025-06-03 07:31:00,274 | INFO     | -- intersect: 15775246796.594582
[2025-06-03 09:35:48] 2025-06-03 07:31:00,275 | INFO     | intersect: 15775246796.594582
[2025-06-03 09:35:48] 2025-06-03 07:31:00,275 | INFO     | chi2: 0.9032750362324086
[2025-06-03 09:35:48] 2025-06-03 07:31:00,275 | INFO     | current chi2=0.9032750362324086 (change=3.1047787889424328 %)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,275 | INFO     | left removable region: 30
[2025-06-03 09:35:48] 2025-06-03 07:31:00,276 | INFO     | sum of square deviations: 2027639878.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,277 | INFO     | sum of deviations: 5867696384.000001
[2025-06-03 09:35:48] 2025-06-03 07:31:00,277 | INFO     | mean x: 1748929669.0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,278 | INFO     | mean y: 2483909.0481283423
[2025-06-03 09:35:48] 2025-06-03 07:31:00,278 | INFO     | -- intersect: -5058665462.695298
[2025-06-03 09:35:48] 2025-06-03 07:31:00,278 | INFO     | intersect: -5058665462.695298
[2025-06-03 09:35:48] 2025-06-03 07:31:00,278 | INFO     | chi2: 0.0010199079093050213
[2025-06-03 09:35:48] 2025-06-03 07:31:00,278 | INFO     | -- intersect: -5058665462.695298
[2025-06-03 09:35:48] 2025-06-03 07:31:00,278 | INFO     | current memory leak: 2.89 B/s (using 187 data points, chi2=0.00)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,279 | INFO     | ..............................
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . Timing measurements:
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . get job = 0 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . initial setup = 10 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . payload setup = 185 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . stage-in = 0 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . payload execution = 13742 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . stage-out = 3 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | . log creation = 1 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,280 | INFO     | ..............................
[2025-06-03 09:35:48] 2025-06-03 07:31:00,418 | INFO     | 
[2025-06-03 09:35:48] 2025-06-03 07:31:00,418 | INFO     | job summary report
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | --------------------------------------------------
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | PanDA job id: 6677388378
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | task id: 45006595
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | errors: (none)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | pilot state: finished 
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | transexitcode: 0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | exeerrorcode: 0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | exeerrordiag: 
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | exitcode: 0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | exitmsg: OK
[2025-06-03 09:35:48] 2025-06-03 07:31:00,419 | INFO     | cpuconsumptiontime: 49502 s
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | nevents: 400
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | neventsw: 0
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | pid: 10600
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | pgrp: 10600
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | corecount: 8
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | event service: False
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | sizes: {0: 2404949, 1: 2405204, 2: 2405232, 12: 2405232, 23: 2405260, 34: 2405288, 45: 2405444, 55: 2405472, 66: 2405500, 77: 2405528, 88: 2405584, 91: 2406098, 98
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | --------------------------------------------------
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | 
[2025-06-03 09:35:48] 2025-06-03 07:31:00,420 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-06-03 09:35:48] 2025-06-03 07:31:00,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,737 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,737 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,737 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,737 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,737 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,737 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,737 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,738 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,739 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,739 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,739 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,739 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 09:35:48] 2025-06-03 07:31:00,739 | INFO     | job 6677388378 has completed (purged errors)
[2025-06-03 09:35:48] 2025-06-03 07:31:00,739 | INFO     | overall cleanup function is called
[2025-06-03 09:35:48] 2025-06-03 07:31:01,749 | INFO     | --- collectZombieJob: --- 10, [10600]
[2025-06-03 09:35:48] 2025-06-03 07:31:01,749 | INFO     | zombie collector waiting for pid 10600
[2025-06-03 09:35:48] 2025-06-03 07:31:01,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 09:35:48] 2025-06-03 07:31:01,749 | INFO     | collected zombie processes
[2025-06-03 09:35:48] 2025-06-03 07:31:01,749 | INFO     | will attempt to kill all subprocesses of pid=10600
[2025-06-03 09:35:48] 2025-06-03 07:31:01,864 | INFO     | process IDs to be killed: [10600] (in reverse order)
[2025-06-03 09:35:48] 2025-06-03 07:31:02,433 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 09:35:48] 2025-06-03 07:31:02,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 09:35:48] 2025-06-03 07:31:02,438 | INFO     | did not find any defunct processes belonging to 10600
[2025-06-03 09:35:48] 2025-06-03 07:31:02,455 | INFO     | did not find any defunct processes belonging to 10600
[2025-06-03 09:35:48] 2025-06-03 07:31:02,456 | INFO     | ready for new job
[2025-06-03 09:35:48] 2025-06-03 07:31:02,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 09:35:48] 2025-06-03 07:31:02,458 | INFO     | **************************************
[2025-06-03 09:35:48] 2025-06-03 07:31:02,458 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 09:35:48] 2025-06-03 07:31:02,458 | INFO     | **************************************
[2025-06-03 09:35:48] 2025-06-03 07:31:02,458 | INFO     | 
[2025-06-03 09:35:48] 2025-06-03 07:31:02,459 | INFO     | pilot is running in a VM
[2025-06-03 09:35:48] 2025-06-03 07:31:02,459 | INFO     | architecture information:
[2025-06-03 09:35:48] 2025-06-03 07:31:02,466 | INFO     | executing command: cat /etc/os-release
[2025-06-03 09:35:48] 2025-06-03 07:31:02,780 | INFO     | cat /etc/os-release:
[2025-06-03 09:35:48] NAME="CentOS Linux"
[2025-06-03 09:35:48] VERSION="7 (Core)"
[2025-06-03 09:35:48] ID="centos"
[2025-06-03 09:35:48] ID_LIKE="rhel fedora"
[2025-06-03 09:35:48] VERSION_ID="7"
[2025-06-03 09:35:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 09:35:48] ANSI_COLOR="0;31"
[2025-06-03 09:35:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 09:35:48] HOME_URL="https://www.centos.org/"
[2025-06-03 09:35:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 09:35:48] 
[2025-06-03 09:35:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 09:35:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 09:35:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 09:35:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 09:35:48] 
[2025-06-03 09:35:48] 2025-06-03 07:31:02,781 | INFO     | **************************************
[2025-06-03 09:35:48] 2025-06-03 07:31:03,284 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-06-03 09:35:48] 2025-06-03 07:31:03,442 | INFO     | sufficient remaining disk space (497032364032 B)
[2025-06-03 09:35:48] 2025-06-03 07:31:03,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 09:35:48] 2025-06-03 07:31:03,442 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 09:35:48] 2025-06-03 07:31:03,442 | INFO     | update_server=False
[2025-06-03 09:35:48] 2025-06-03 07:31:03,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 09:35:48] 2025-06-03 07:31:03,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 09:35:48] 2025-06-03 07:31:03,444 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 09:35:48] 2025-06-03 07:31:03,444 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 09:35:48] 2025-06-03 07:31:03,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 09:35:48] 2025-06-03 07:31:03,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 09:35:48] 2025-06-03 07:31:03,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 09:35:48] 2025-06-03 07:31:03,753 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:35:48] 2025-06-03 07:31:03,753 | INFO     | aborting loop
[2025-06-03 09:35:48] 2025-06-03 07:31:04,255 | INFO     | all data control threads have been joined
[2025-06-03 09:35:48] 2025-06-03 07:31:04,449 | INFO     | [job] retrieve thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:04,582 | INFO     | all job control threads have been joined
[2025-06-03 09:35:48] 2025-06-03 07:31:04,595 | INFO     | all payload control threads have been joined
[2025-06-03 09:35:48] 2025-06-03 07:31:04,597 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:04,759 | INFO     | [job] job monitor thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,261 | INFO     | [data] control thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,321 | INFO     | [payload] failed_post thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,377 | INFO     | [payload] validate_post thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:35:48] 2025-06-03 07:31:05,450 | INFO     | [data] copytool_out thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,588 | INFO     | [job] control thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,597 | INFO     | [job] validate thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,602 | INFO     | [payload] control thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,864 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,864 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:05,914 | INFO     | [data] copytool_in thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:06,442 | INFO     | [job] queue monitor thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:07,459 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 09:35:48] 2025-06-03 07:31:08,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147786553152)>', '<ExcThread(monitor, started 140147056174848)>']
[2025-06-03 09:35:48] 2025-06-03 07:31:08,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 09:35:48] 2025-06-03 07:31:08,474 | INFO     | [monitor] control thread has ended
[2025-06-03 09:35:48] 2025-06-03 07:31:13,416 | INFO     | all workflow threads have been joined
[2025-06-03 09:35:48] 2025-06-03 07:31:13,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 09:35:48] 2025-06-03 07:31:13,416 | INFO     | traces error code: 0
[2025-06-03 09:35:48] 2025-06-03 07:31:13,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 09:35:48] 2025-06-03 07:31:13,659 [wrapper] ==== pilot stdout END ====
[2025-06-03 09:35:48] 2025-06-03 07:31:13,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 09:35:48] 2025-06-03 07:31:13,672 [wrapper] pilotpid: 1980
[2025-06-03 09:35:48] 2025-06-03 07:31:13,675 [wrapper] Pilot exit status: 0
[2025-06-03 09:35:48] 2025-06-03 07:31:14,211 [wrapper] pandaids: 6677388378
[2025-06-03 09:35:48] 2025-06-03 07:31:15,212 [wrapper] cleanup supervisor_pilot  9201 1981
[2025-06-03 09:35:48] 2025-06-03 07:31:15,332 [wrapper] Test setup, not cleaning
[2025-06-03 09:35:48] 2025-06-03 07:31:15,502 [wrapper] apfmon messages muted
[2025-06-03 09:35:48] 2025-06-03 07:31:15,614 [wrapper] ==== wrapper stdout END ====
[2025-06-03 09:35:48] 2025-06-03 07:31:15,747 [wrapper] ==== wrapper stderr END ====
[2025-06-03 09:35:48]  *** Error codes and diagnostics ***
[2025-06-03 09:35:48]     "exeErrorCode": 0,
[2025-06-03 09:35:48]     "exeErrorDiag": "",
[2025-06-03 09:35:48]     "pilotErrorCode": 0,
[2025-06-03 09:35:48]     "pilotErrorDiag": "",
[2025-06-03 09:35:48]  *** Listing of results directory ***
[2025-06-03 09:35:48] total 390232
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:25 pilot3.tar.gz
[2025-06-03 09:35:48] -rwx------. 1 boinc boinc     37140 Jun  2 19:42 runpilot2-wrapper.sh
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:42 queuedata.json
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc       100 Jun  3 05:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 09:35:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 05:30 run_atlas
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc       105 Jun  3 05:30 job.xml
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc      6393 Jun  3 05:30 init_data.xml
[2025-06-03 09:35:48] -rw-r--r--. 2 boinc boinc 213790410 Jun  3 05:30 EVNT.45006593._000241.pool.root.1
[2025-06-03 09:35:48] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:30 start_atlas.sh
[2025-06-03 09:35:48] drwxrwx--x. 2 boinc boinc        68 Jun  3 05:30 shared
[2025-06-03 09:35:48] -rw-r--r--. 2 boinc boinc    508874 Jun  3 05:30 input.tar.gz
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc         0 Jun  3 05:30 boinc_lockfile
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc      2520 Jun  3 05:30 pandaJob.out
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc    988073 Jun  3 05:33 agis_schedconf.cvmfs.json
[2025-06-03 09:35:48] drwx------. 4 boinc boinc      4096 Jun  3 05:33 pilot3
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc 178807490 Jun  3 09:28 HITS.45006595._006005.pool.root.1
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc       531 Jun  3 09:28 boinc_task_state.xml
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc      1018 Jun  3 09:29 memory_monitor_summary.json
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc   1603667 Jun  3 09:29 agis_ddmendpoints.agis.ALL.json
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc    371671 Jun  3 09:29 log.45006595._006005.job.log.tgz.1
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc        95 Jun  3 09:30 pilot_heartbeat.json
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc      7688 Jun  3 09:31 heartbeat.json
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc      4540 Jun  3 09:31 pilotlog.txt
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc   1215511 Jun  3 09:31 log.45006595._006005.job.log.1
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc       357 Jun  3 09:31 output.list
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc       620 Jun  3 09:31 runtime_log
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc   1607680 Jun  3 09:31 result.tar.gz
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc      8673 Jun  3 09:31 runtime_log.err
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc       656 Jun  3 09:31 mZ5KDm5LOg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmV0VKDmh6jWFm.diag
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc      8192 Jun  3 09:35 boinc_mmap_file
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc        28 Jun  3 09:35 wrapper_checkpoint.txt
[2025-06-03 09:35:48] -rw-r--r--. 1 boinc boinc     20511 Jun  3 09:35 stderr.txt
[2025-06-03 09:35:48] HITS file was successfully produced:
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc 178807490 Jun  3 09:28 shared/HITS.pool.root.1
[2025-06-03 09:35:48]  *** Contents of shared directory: ***
[2025-06-03 09:35:48] total 385488
[2025-06-03 09:35:48] -rw-r--r--. 2 boinc boinc 213790410 Jun  3 05:30 ATLAS.root_0
[2025-06-03 09:35:48] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:30 start_atlas.sh
[2025-06-03 09:35:48] -rw-r--r--. 2 boinc boinc    508874 Jun  3 05:30 input.tar.gz
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc 178807490 Jun  3 09:28 HITS.pool.root.1
[2025-06-03 09:35:48] -rw-------. 1 boinc boinc   1607680 Jun  3 09:31 result.tar.gz
09:35:50 (29203): run_atlas exited; CPU time 49691.840675
09:35:50 (29203): called boinc_finish(0)

</stderr_txt>
]]>

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