Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:11:12 (7494): wrapper (7.7.26015): starting
16:11:12 (7494): wrapper: running run_atlas (--nthreads 12)
[2025-06-02 16:11:12] Arguments: --nthreads 12
[2025-06-02 16:11:12] Threads: 12
[2025-06-02 16:11:12] Checking for CVMFS
[2025-06-02 16:11:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 16:11:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 16:11:13] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 16:11:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 16:11:13] 2.11.2.0 2987 33218 83324 146717 1 60 14897653 20275200 1 130560 0 13408565 99.980 6001500 7266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-02 16:11:13] CVMFS is ok
[2025-06-02 16:11:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 16:11:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 16:11:13] Further information can be found at the LHC@home message board.
[2025-06-02 16:11:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 16:11:13] Checking for apptainer binary...
[2025-06-02 16:11:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 16:11:13] Running /usr/bin/apptainer --version
[2025-06-02 16:11:13] apptainer version 1.3.2-1.el7
[2025-06-02 16:11:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 16:11:14] c-205-19.aglt2.org
[2025-06-02 16:11:14] apptainer works
[2025-06-02 16:11:14] Set ATHENA_PROC_NUMBER=12
[2025-06-02 16:11:14] Set ATHENA_CORE_NUMBER=12
[2025-06-02 16:11:14] Starting ATLAS job with PandaID=6677380574
[2025-06-02 16:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 17:16:17]  *** The last 200 lines of the pilot log: ***
[2025-06-02 17:16:17]  is_altstaged=None
[2025-06-02 17:16:17]  is_tar=False
[2025-06-02 17:16:17]  lfn=log.45006595._002206.job.log.tgz.1
[2025-06-02 17:16:17]  mtime=0
[2025-06-02 17:16:17]  protocol_id=None
[2025-06-02 17:16:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-02 17:16:17]  replicas=None
[2025-06-02 17:16:17]  scope=mc23_13p6TeV
[2025-06-02 17:16:17]  status=None
[2025-06-02 17:16:17]  status_code=0
[2025-06-02 17:16:17]  storage_token=
[2025-06-02 17:16:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677380574/log.45006595._002206.job.log.tgz.1
[2025-06-02 17:16:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/fa/log.45006595._002206.job.log.tgz.1
[2025-06-02 17:16:17]  workdir=None
[2025-06-02 17:16:17] ]
[2025-06-02 17:16:17] 2025-06-02 21:15:47,453 | INFO     | transferring file log.45006595._002206.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677380574/log.45006595._002206.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-02 17:16:17] 2025-06-02 21:15:47,454 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677380574/log.45006595._002206.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._002206.job
[2025-06-02 17:16:17] 2025-06-02 21:15:47,475 | INFO     | adding to output.list: log.45006595._002206.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/fa/log.45006595._002206.job.log.tg
[2025-06-02 17:16:17] 2025-06-02 21:15:47,476 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-02 17:16:17] 2025-06-02 21:15:47,476 | INFO     | summary of transferred files:
[2025-06-02 17:16:17] 2025-06-02 21:15:47,476 | INFO     |  -- lfn=log.45006595._002206.job.log.tgz.1, status_code=0, status=transferred
[2025-06-02 17:16:17] 2025-06-02 21:15:47,477 | INFO     | stage-out finished correctly
[2025-06-02 17:16:17] 2025-06-02 21:15:49,863 | WARNING  | process 17513 can no longer be monitored (due to stat problems) - aborting
[2025-06-02 17:16:17] 2025-06-02 21:15:49,863 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677380574/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 17:16:17] 2025-06-02 21:15:49,948 | INFO     | number of running child processes to parent process 17513: 1
[2025-06-02 17:16:17] 2025-06-02 21:15:49,948 | INFO     | maximum number of monitored processes: 6
[2025-06-02 17:16:17] 2025-06-02 21:15:50,480 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-02 17:16:17] 2025-06-02 21:15:52,451 | INFO     | monitor loop #288: job 0:6677380574 is in state 'finished'
[2025-06-02 17:16:17] 2025-06-02 21:15:52,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 17:16:17] 2025-06-02 21:15:52,748 | INFO     | job 6677380574 has state=finished
[2025-06-02 17:16:17] 2025-06-02 21:15:52,748 | INFO     | preparing for final server update for job 6677380574 in state='finished'
[2025-06-02 17:16:17] 2025-06-02 21:15:52,749 | INFO     | this job has now completed (state=finished)
[2025-06-02 17:16:17] 2025-06-02 21:15:52,749 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-02 17:16:17] 2025-06-02 21:15:52,749 | INFO     | log transfer has been attempted: DONE
[2025-06-02 17:16:17] 2025-06-02 21:15:52,749 | INFO     | job 6677380574 has finished - writing final server update
[2025-06-02 17:16:17] 2025-06-02 21:15:52,750 | INFO     | total number of processed events: 400 (read)
[2025-06-02 17:16:17] 2025-06-02 21:15:52,751 | INFO     | executing command: lscpu
[2025-06-02 17:16:17] 2025-06-02 21:15:52,780 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-02 17:16:17] 2025-06-02 21:15:54,955 | INFO     | monitor loop #289: job 0:6677380574 is in state 'finished'
[2025-06-02 17:16:17] 2025-06-02 21:15:54,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 17:16:17] 2025-06-02 21:15:57,440 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-02 17:16:17] 2025-06-02 21:15:57,440 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677380574/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 17:16:17] 2025-06-02 21:15:57,441 | INFO     | extracted standard info from prmon json
[2025-06-02 17:16:17] 2025-06-02 21:15:57,442 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 17:16:17] 2025-06-02 21:15:57,442 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 17:16:17] 2025-06-02 21:15:57,442 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 17:16:17] 2025-06-02 21:15:57,442 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 17:16:17] 2025-06-02 21:15:57,445 | INFO     | fitting pss+swap vs Time
[2025-06-02 17:16:17] 2025-06-02 21:15:57,445 | INFO     | sum of square deviations: 54438230.0
[2025-06-02 17:16:17] 2025-06-02 21:15:57,445 | INFO     | sum of deviations: 1817045674.0
[2025-06-02 17:16:17] 2025-06-02 21:15:57,446 | INFO     | mean x: 1748897101.5
[2025-06-02 17:16:17] 2025-06-02 21:15:57,446 | INFO     | mean y: 2699653.785714286
[2025-06-02 17:16:17] 2025-06-02 21:15:57,446 | INFO     | -- intersect: -58372194470.28323
[2025-06-02 17:16:17] 2025-06-02 21:15:57,446 | INFO     | intersect: -58372194470.28323
[2025-06-02 17:16:17] 2025-06-02 21:15:57,446 | INFO     | chi2: 0.043306584392641616
[2025-06-02 17:16:17] 2025-06-02 21:15:57,447 | INFO     | -- intersect: -58372194470.28323
[2025-06-02 17:16:17] 2025-06-02 21:15:57,447 | INFO     | current memory leak: 33.38 B/s (using 56 data points, chi2=0.04)
[2025-06-02 17:16:17] 2025-06-02 21:15:57,447 | INFO     | ..............................
[2025-06-02 17:16:17] 2025-06-02 21:15:57,447 | INFO     | . Timing measurements:
[2025-06-02 17:16:17] 2025-06-02 21:15:57,447 | INFO     | . get job = 0 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,448 | INFO     | . initial setup = 2 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,448 | INFO     | . payload setup = 9 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,448 | INFO     | . stage-in = 0 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,448 | INFO     | . payload execution = 3829 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,448 | INFO     | . stage-out = 0 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,448 | INFO     | . log creation = 0 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,448 | INFO     | ..............................
[2025-06-02 17:16:17] 2025-06-02 21:15:57,537 | INFO     | 
[2025-06-02 17:16:17] 2025-06-02 21:15:57,537 | INFO     | job summary report
[2025-06-02 17:16:17] 2025-06-02 21:15:57,544 | INFO     | --------------------------------------------------
[2025-06-02 17:16:17] 2025-06-02 21:15:57,544 | INFO     | PanDA job id: 6677380574
[2025-06-02 17:16:17] 2025-06-02 21:15:57,544 | INFO     | task id: 45006595
[2025-06-02 17:16:17] 2025-06-02 21:15:57,544 | INFO     | errors: (none)
[2025-06-02 17:16:17] 2025-06-02 21:15:57,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 17:16:17] 2025-06-02 21:15:57,544 | INFO     | pilot state: finished 
[2025-06-02 17:16:17] 2025-06-02 21:15:57,545 | INFO     | transexitcode: 0
[2025-06-02 17:16:17] 2025-06-02 21:15:57,545 | INFO     | exeerrorcode: 0
[2025-06-02 17:16:17] 2025-06-02 21:15:57,545 | INFO     | exeerrordiag: 
[2025-06-02 17:16:17] 2025-06-02 21:15:57,545 | INFO     | exitcode: 0
[2025-06-02 17:16:17] 2025-06-02 21:15:57,545 | INFO     | exitmsg: OK
[2025-06-02 17:16:17] 2025-06-02 21:15:57,545 | INFO     | cpuconsumptiontime: 40976 s
[2025-06-02 17:16:17] 2025-06-02 21:15:57,546 | INFO     | nevents: 400
[2025-06-02 17:16:17] 2025-06-02 21:15:57,546 | INFO     | neventsw: 0
[2025-06-02 17:16:17] 2025-06-02 21:15:57,546 | INFO     | pid: 17513
[2025-06-02 17:16:17] 2025-06-02 21:15:57,546 | INFO     | pgrp: 17513
[2025-06-02 17:16:17] 2025-06-02 21:15:57,546 | INFO     | corecount: 12
[2025-06-02 17:16:17] 2025-06-02 21:15:57,546 | INFO     | event service: False
[2025-06-02 17:16:17] 2025-06-02 21:15:57,547 | INFO     | sizes: {0: 2405005, 1: 2405204, 6: 2405410, 11: 2405438, 3843: 2431086, 3844: 2440027, 3847: 2440211, 3854: 2440381}
[2025-06-02 17:16:17] 2025-06-02 21:15:57,547 | INFO     | --------------------------------------------------
[2025-06-02 17:16:17] 2025-06-02 21:15:57,547 | INFO     | 
[2025-06-02 17:16:17] 2025-06-02 21:15:57,547 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-02 17:16:17] 2025-06-02 21:15:57,571 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,571 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,572 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,574 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 17:16:17] 2025-06-02 21:15:57,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,574 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 17:16:17] 2025-06-02 21:15:57,575 | INFO     | job 6677380574 has completed (purged errors)
[2025-06-02 17:16:17] 2025-06-02 21:15:57,575 | INFO     | overall cleanup function is called
[2025-06-02 17:16:17] 2025-06-02 21:15:58,583 | INFO     | --- collectZombieJob: --- 10, [17513]
[2025-06-02 17:16:17] 2025-06-02 21:15:58,583 | INFO     | zombie collector waiting for pid 17513
[2025-06-02 17:16:17] 2025-06-02 21:15:58,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 17:16:17] 2025-06-02 21:15:58,583 | INFO     | collected zombie processes
[2025-06-02 17:16:17] 2025-06-02 21:15:58,583 | INFO     | will attempt to kill all subprocesses of pid=17513
[2025-06-02 17:16:17] 2025-06-02 21:15:58,674 | INFO     | process IDs to be killed: [17513] (in reverse order)
[2025-06-02 17:16:17] 2025-06-02 21:15:58,727 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 17:16:17] 2025-06-02 21:15:58,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 17:16:17] 2025-06-02 21:15:58,731 | INFO     | did not find any defunct processes belonging to 17513
[2025-06-02 17:16:17] 2025-06-02 21:15:58,734 | INFO     | did not find any defunct processes belonging to 17513
[2025-06-02 17:16:17] 2025-06-02 21:15:58,735 | INFO     | ready for new job
[2025-06-02 17:16:17] 2025-06-02 21:15:58,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 17:16:17] 2025-06-02 21:15:58,736 | INFO     | **************************************
[2025-06-02 17:16:17] 2025-06-02 21:15:58,737 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 17:16:17] 2025-06-02 21:15:58,737 | INFO     | **************************************
[2025-06-02 17:16:17] 2025-06-02 21:15:58,737 | INFO     | 
[2025-06-02 17:16:17] 2025-06-02 21:15:58,737 | INFO     | architecture information:
[2025-06-02 17:16:17] 2025-06-02 21:15:58,738 | INFO     | executing command: cat /etc/os-release
[2025-06-02 17:16:17] 2025-06-02 21:15:58,752 | INFO     | cat /etc/os-release:
[2025-06-02 17:16:17] NAME="CentOS Linux"
[2025-06-02 17:16:17] VERSION="7 (Core)"
[2025-06-02 17:16:17] ID="centos"
[2025-06-02 17:16:17] ID_LIKE="rhel fedora"
[2025-06-02 17:16:17] VERSION_ID="7"
[2025-06-02 17:16:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 17:16:17] ANSI_COLOR="0;31"
[2025-06-02 17:16:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 17:16:17] HOME_URL="https://www.centos.org/"
[2025-06-02 17:16:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 17:16:17] 
[2025-06-02 17:16:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 17:16:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 17:16:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 17:16:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 17:16:17] 
[2025-06-02 17:16:17] 2025-06-02 21:15:58,752 | INFO     | **************************************
[2025-06-02 17:16:17] 2025-06-02 21:15:59,255 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-02 17:16:17] 2025-06-02 21:15:59,272 | INFO     | sufficient remaining disk space (29421993984 B)
[2025-06-02 17:16:17] 2025-06-02 21:15:59,273 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 17:16:17] 2025-06-02 21:15:59,273 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 17:16:17] 2025-06-02 21:15:59,273 | INFO     | update_server=False
[2025-06-02 17:16:17] 2025-06-02 21:15:59,273 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 17:16:17] 2025-06-02 21:15:59,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 17:16:17] 2025-06-02 21:15:59,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 17:16:17] 2025-06-02 21:15:59,274 | INFO     | aborting loop
[2025-06-02 17:16:17] 2025-06-02 21:15:59,557 | INFO     | all job control threads have been joined
[2025-06-02 17:16:17] 2025-06-02 21:15:59,569 | INFO     | all data control threads have been joined
[2025-06-02 17:16:17] 2025-06-02 21:15:59,598 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 17:16:17] 2025-06-02 21:15:59,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 17:16:17] 2025-06-02 21:15:59,598 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 17:16:17] 2025-06-02 21:16:00,279 | INFO     | [job] retrieve thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,279 | INFO     | [job] queue monitor thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,280 | INFO     | [job] job monitor thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,425 | INFO     | [payload] validate_post thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,472 | INFO     | all payload control threads have been joined
[2025-06-02 17:16:17] 2025-06-02 21:16:00,563 | INFO     | [job] control thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,567 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,574 | INFO     | [data] control thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 17:16:17] 2025-06-02 21:16:00,653 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:00,853 | INFO     | [payload] failed_post thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:01,023 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:01,055 | INFO     | [data] copytool_in thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:01,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 17:16:17] 2025-06-02 21:16:01,477 | INFO     | [payload] control thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:01,732 | INFO     | [job] validate thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:02,582 | INFO     | [data] copytool_out thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:05,077 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:09,906 | INFO     | job.realtimelogging is not enabled
[2025-06-02 17:16:17] 2025-06-02 21:16:10,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 17:16:17] 2025-06-02 21:16:12,318 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995361728320)>', '<ExcThread(monitor, started 139994744198912)>']
[2025-06-02 17:16:17] 2025-06-02 21:16:12,659 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 17:16:17] 2025-06-02 21:16:12,659 | INFO     | [monitor] control thread has ended
[2025-06-02 17:16:17] 2025-06-02 21:16:17,329 | INFO     | all workflow threads have been joined
[2025-06-02 17:16:17] 2025-06-02 21:16:17,329 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 17:16:17] 2025-06-02 21:16:17,329 | INFO     | traces error code: 0
[2025-06-02 17:16:17] 2025-06-02 21:16:17,330 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 17:16:17] 2025-06-02 21:16:17,415 [wrapper] ==== pilot stdout END ====
[2025-06-02 17:16:17] 2025-06-02 21:16:17,419 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 17:16:17] 2025-06-02 21:16:17,423 [wrapper] pilotpid: 11093
[2025-06-02 17:16:17] 2025-06-02 21:16:17,427 [wrapper] Pilot exit status: 0
[2025-06-02 17:16:17] 2025-06-02 21:16:17,442 [wrapper] pandaids: 6677380574
[2025-06-02 17:16:17] 2025-06-02 21:16:17,481 [wrapper] cleanup supervisor_pilot 28496 11094
[2025-06-02 17:16:17] 2025-06-02 21:16:17,485 [wrapper] Test setup, not cleaning
[2025-06-02 17:16:17] 2025-06-02 21:16:17,488 [wrapper] apfmon messages muted
[2025-06-02 17:16:17] 2025-06-02 21:16:17,492 [wrapper] ==== wrapper stdout END ====
[2025-06-02 17:16:17] 2025-06-02 21:16:17,496 [wrapper] ==== wrapper stderr END ====
[2025-06-02 17:16:17]  *** Error codes and diagnostics ***
[2025-06-02 17:16:17]     "exeErrorCode": 0,
[2025-06-02 17:16:17]     "exeErrorDiag": "",
[2025-06-02 17:16:17]     "pilotErrorCode": 0,
[2025-06-02 17:16:17]     "pilotErrorDiag": "",
[2025-06-02 17:16:17]  *** Listing of results directory ***
[2025-06-02 17:16:17] total 388592
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas    495897 Jun  2 11:48 pilot3.tar.gz
[2025-06-02 17:16:17] -rwx------ 1 boincer umatlas     37140 Jun  2 11:51 runpilot2-wrapper.sh
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas      5111 Jun  2 11:53 queuedata.json
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas       100 Jun  2 16:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 17:16:17] -rwxr-xr-x 1 boincer umatlas      7986 Jun  2 16:11 run_atlas
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas       105 Jun  2 16:11 job.xml
[2025-06-02 17:16:17] -rw-r--r-- 2 boincer umatlas 214797936 Jun  2 16:11 EVNT.45006593._000089.pool.root.1
[2025-06-02 17:16:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 16:11 start_atlas.sh
[2025-06-02 17:16:17] drwxrwx--x 2 boincer umatlas      4096 Jun  2 16:11 shared
[2025-06-02 17:16:17] -rw-r--r-- 2 boincer umatlas    508879 Jun  2 16:11 input.tar.gz
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas         0 Jun  2 16:11 boinc_lockfile
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas      2521 Jun  2 16:11 pandaJob.out
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas    988356 Jun  2 16:11 agis_schedconf.cvmfs.json
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas   1603667 Jun  2 16:11 agis_ddmendpoints.agis.ALL.json
[2025-06-02 17:16:17] drwx------ 4 boincer umatlas      4096 Jun  2 16:11 pilot3
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas      5868 Jun  2 17:09 init_data.xml
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas        95 Jun  2 17:15 pilot_heartbeat.json
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas 177830610 Jun  2 17:15 HITS.45006595._002206.pool.root.1
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas       529 Jun  2 17:15 boinc_task_state.xml
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas      1049 Jun  2 17:15 memory_monitor_summary.json
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas    346876 Jun  2 17:15 log.45006595._002206.job.log.tgz.1
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas      7741 Jun  2 17:15 heartbeat.json
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas      8192 Jun  2 17:16 boinc_mmap_file
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas        27 Jun  2 17:16 wrapper_checkpoint.txt
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas      4425 Jun  2 17:16 pilotlog.txt
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas    377293 Jun  2 17:16 log.45006595._002206.job.log.1
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas       357 Jun  2 17:16 output.list
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas       620 Jun  2 17:16 runtime_log
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas    747520 Jun  2 17:16 result.tar.gz
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas      8661 Jun  2 17:16 runtime_log.err
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas       659 Jun  2 17:16 E7vMDm2cMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmMgVKDmhhkKyn.diag
[2025-06-02 17:16:17] -rw-r--r-- 1 boincer umatlas     21376 Jun  2 17:16 stderr.txt
[2025-06-02 17:16:17] HITS file was successfully produced:
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas 177830610 Jun  2 17:15 shared/HITS.pool.root.1
[2025-06-02 17:16:17]  *** Contents of shared directory: ***
[2025-06-02 17:16:17] total 384680
[2025-06-02 17:16:17] -rw-r--r-- 2 boincer umatlas 214797936 Jun  2 16:11 ATLAS.root_0
[2025-06-02 17:16:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 16:11 start_atlas.sh
[2025-06-02 17:16:17] -rw-r--r-- 2 boincer umatlas    508879 Jun  2 16:11 input.tar.gz
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas 177830610 Jun  2 17:15 HITS.pool.root.1
[2025-06-02 17:16:17] -rw------- 1 boincer umatlas    747520 Jun  2 17:16 result.tar.gz
17:16:19 (7494): run_atlas exited; CPU time 40913.830671
17:16:19 (7494): called boinc_finish(0)

</stderr_txt>
]]>

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