Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:07:37 (2081743): wrapper (7.7.26015): starting
12:07:37 (2081743): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 12:07:38] Arguments: --nthreads 4
[2025-06-04 12:07:38] Threads: 4
[2025-06-04 12:07:38] Checking for CVMFS
[2025-06-04 12:07:38] No cvmfs_config command found, will try listing directly
[2025-06-04 12:07:38] CVMFS is ok
[2025-06-04 12:07:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:07:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 12:07:38] Further information can be found at the LHC@home message board.
[2025-06-04 12:07:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:07:38] Checking for apptainer binary...
[2025-06-04 12:07:38] which: no apptainer in ((null))
[2025-06-04 12:07:38] apptainer is not installed, using version from CVMFS
[2025-06-04 12:07:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:07:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2025-06-04 12:07:38] apptainer works
[2025-06-04 12:07:38] Set ATHENA_PROC_NUMBER=4
[2025-06-04 12:07:38] Set ATHENA_CORE_NUMBER=4
[2025-06-04 12:07:38] Starting ATLAS job with PandaID=6677375641
[2025-06-04 12:07:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:20:26]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:20:26] 2025-06-04 13:18:11,868 | WARNING  | process 2092147 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 15:20:26] 2025-06-04 13:18:11,869 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6677375641/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,167 | INFO     | number of running child processes to parent process 2092147: 1
[2025-06-04 15:20:26] 2025-06-04 13:18:12,168 | INFO     | maximum number of monitored processes: 6
[2025-06-04 15:20:26] 2025-06-04 13:18:12,188 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 15:20:26] 2025-06-04 13:18:12,188 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6677375641/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,189 | INFO     | extracted standard info from prmon json
[2025-06-04 15:20:26] 2025-06-04 13:18:12,189 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:20:26] 2025-06-04 13:18:12,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:20:26] 2025-06-04 13:18:12,189 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:20:26] 2025-06-04 13:18:12,190 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:20:26] 2025-06-04 13:18:12,194 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:20:26] 2025-06-04 13:18:12,194 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,196 | INFO     | sum of deviations: -490623365.9999993
[2025-06-04 15:20:26] 2025-06-04 13:18:12,196 | INFO     | mean x: 1749037365.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,196 | INFO     | mean y: 2341176.1550802137
[2025-06-04 15:20:26] 2025-06-04 13:18:12,196 | INFO     | -- intersect: 425551731.73090094
[2025-06-04 15:20:26] 2025-06-04 13:18:12,196 | INFO     | intersect: 425551731.73090094
[2025-06-04 15:20:26] 2025-06-04 13:18:12,197 | INFO     | chi2: 1.795793638054526
[2025-06-04 15:20:26] 2025-06-04 13:18:12,197 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 15:20:26] 2025-06-04 13:18:12,198 | INFO     | sum of deviations: -754826139.0000072
[2025-06-04 15:20:26] 2025-06-04 13:18:12,198 | INFO     | mean x: 1749037212.5
[2025-06-04 15:20:26] 2025-06-04 13:18:12,198 | INFO     | mean y: 2340921.659340659
[2025-06-04 15:20:26] 2025-06-04 13:18:12,198 | INFO     | -- intersect: 708604001.7122167
[2025-06-04 15:20:26] 2025-06-04 13:18:12,199 | INFO     | intersect: 708604001.7122167
[2025-06-04 15:20:26] 2025-06-04 13:18:12,199 | INFO     | chi2: 1.7948071974084017
[2025-06-04 15:20:26] 2025-06-04 13:18:12,199 | INFO     | current chi2=1.7948071974084017 (change=0.05493062372094546 %)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,199 | INFO     | right removable region: 181
[2025-06-04 15:20:26] 2025-06-04 13:18:12,200 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 15:20:26] 2025-06-04 13:18:12,201 | INFO     | sum of deviations: -27208457019.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,201 | INFO     | mean x: 1749037517.5
[2025-06-04 15:20:26] 2025-06-04 13:18:12,201 | INFO     | mean y: 2366587.340659341
[2025-06-04 15:20:26] 2025-06-04 13:18:12,201 | INFO     | -- intersect: 25460324408.141838
[2025-06-04 15:20:26] 2025-06-04 13:18:12,201 | INFO     | intersect: 25460324408.141838
[2025-06-04 15:20:26] 2025-06-04 13:18:12,202 | INFO     | chi2: 0.28726305467619234
[2025-06-04 15:20:26] 2025-06-04 13:18:12,202 | INFO     | current chi2=0.28726305467619234 (change=84.00355984179792 %)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,202 | INFO     | sum of square deviations: 1719429448.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,203 | INFO     | sum of deviations: -18875019001.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,204 | INFO     | mean x: 1749037670.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,204 | INFO     | mean y: 2358084.3672316386
[2025-06-04 15:20:26] 2025-06-04 13:18:12,204 | INFO     | -- intersect: 19202401036.47257
[2025-06-04 15:20:26] 2025-06-04 13:18:12,204 | INFO     | intersect: 19202401036.47257
[2025-06-04 15:20:26] 2025-06-04 13:18:12,204 | INFO     | chi2: 0.24091589984184408
[2025-06-04 15:20:26] 2025-06-04 13:18:12,204 | INFO     | current chi2=0.24091589984184408 (change=16.134046505420454 %)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,205 | INFO     | left removable region: 20
[2025-06-04 15:20:26] 2025-06-04 13:18:12,205 | INFO     | sum of square deviations: 1294014960.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,206 | INFO     | sum of deviations: 491110390.0000002
[2025-06-04 15:20:26] 2025-06-04 13:18:12,206 | INFO     | mean x: 1749037792.0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,206 | INFO     | mean y: 2335567.2608695654
[2025-06-04 15:20:26] 2025-06-04 13:18:12,206 | INFO     | -- intersect: -661467138.8174738
[2025-06-04 15:20:26] 2025-06-04 13:18:12,206 | INFO     | intersect: -661467138.8174738
[2025-06-04 15:20:26] 2025-06-04 13:18:12,207 | INFO     | chi2: 0.0312508719118547
[2025-06-04 15:20:26] 2025-06-04 13:18:12,207 | INFO     | -- intersect: -661467138.8174738
[2025-06-04 15:20:26] 2025-06-04 13:18:12,207 | INFO     | current memory leak: 0.38 B/s (using 161 data points, chi2=0.03)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | ..............................
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . Timing measurements:
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . get job = 0 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . initial setup = 1 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . payload setup = 6 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . stage-in = 0 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . payload execution = 11394 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . stage-out = 1 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,208 | INFO     | . log creation = 0 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,209 | INFO     | ..............................
[2025-06-04 15:20:26] 2025-06-04 13:18:12,513 | INFO     | 
[2025-06-04 15:20:26] 2025-06-04 13:18:12,513 | INFO     | job summary report
[2025-06-04 15:20:26] 2025-06-04 13:18:12,513 | INFO     | --------------------------------------------------
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | PanDA job id: 6677375641
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | task id: 45006595
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | errors: (none)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | pilot state: finished 
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | transexitcode: 0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | exeerrorcode: 0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | exeerrordiag: 
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | exitcode: 0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | exitmsg: OK
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | cpuconsumptiontime: 43620 s
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | nevents: 400
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | neventsw: 0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,514 | INFO     | pid: 2092147
[2025-06-04 15:20:26] 2025-06-04 13:18:12,515 | INFO     | pgrp: 2092147
[2025-06-04 15:20:26] 2025-06-04 13:18:12,515 | INFO     | corecount: 4
[2025-06-04 15:20:26] 2025-06-04 13:18:12,515 | INFO     | event service: False
[2025-06-04 15:20:26] 2025-06-04 13:18:12,515 | INFO     | sizes: {0: 2405010, 1: 2405209, 5: 2405415, 11: 2405471, 11403: 2434564, 11404: 2434563, 11405: 2444763, 11406: 2444819, 11410: 2444989}
[2025-06-04 15:20:26] 2025-06-04 13:18:12,515 | INFO     | --------------------------------------------------
[2025-06-04 15:20:26] 2025-06-04 13:18:12,515 | INFO     | 
[2025-06-04 15:20:26] 2025-06-04 13:18:12,515 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-04 15:20:26] 2025-06-04 13:18:12,534 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | job 6677375641 has completed (purged errors)
[2025-06-04 15:20:26] 2025-06-04 13:18:12,536 | INFO     | overall cleanup function is called
[2025-06-04 15:20:26] 2025-06-04 13:18:13,543 | INFO     | --- collectZombieJob: --- 10, [2092147]
[2025-06-04 15:20:26] 2025-06-04 13:18:13,544 | INFO     | zombie collector waiting for pid 2092147
[2025-06-04 15:20:26] 2025-06-04 13:18:13,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:20:26] 2025-06-04 13:18:13,544 | INFO     | collected zombie processes
[2025-06-04 15:20:26] 2025-06-04 13:18:13,544 | INFO     | will attempt to kill all subprocesses of pid=2092147
[2025-06-04 15:20:26] 2025-06-04 13:18:13,871 | INFO     | process IDs to be killed: [2092147] (in reverse order)
[2025-06-04 15:20:26] 2025-06-04 13:18:13,946 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:20:26] 2025-06-04 13:18:13,947 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:20:26] 2025-06-04 13:18:13,957 | INFO     | did not find any defunct processes belonging to 2092147
[2025-06-04 15:20:26] 2025-06-04 13:18:13,966 | INFO     | did not find any defunct processes belonging to 2092147
[2025-06-04 15:20:26] 2025-06-04 13:18:13,967 | INFO     | ready for new job
[2025-06-04 15:20:26] 2025-06-04 13:18:13,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:20:26] 2025-06-04 13:18:13,969 | INFO     | **************************************
[2025-06-04 15:20:26] 2025-06-04 13:18:13,969 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:20:26] 2025-06-04 13:18:13,969 | INFO     | **************************************
[2025-06-04 15:20:26] 2025-06-04 13:18:13,969 | INFO     | 
[2025-06-04 15:20:26] 2025-06-04 13:18:13,972 | INFO     | architecture information:
[2025-06-04 15:20:26] 2025-06-04 13:18:13,972 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:20:26] 2025-06-04 13:18:13,985 | INFO     | cat /etc/os-release:
[2025-06-04 15:20:26] NAME="CentOS Linux"
[2025-06-04 15:20:26] VERSION="7 (Core)"
[2025-06-04 15:20:26] ID="centos"
[2025-06-04 15:20:26] ID_LIKE="rhel fedora"
[2025-06-04 15:20:26] VERSION_ID="7"
[2025-06-04 15:20:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:20:26] ANSI_COLOR="0;31"
[2025-06-04 15:20:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:20:26] HOME_URL="https://www.centos.org/"
[2025-06-04 15:20:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:20:26] 
[2025-06-04 15:20:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:20:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:20:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:20:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:20:26] 
[2025-06-04 15:20:26] 2025-06-04 13:18:13,985 | INFO     | **************************************
[2025-06-04 15:20:26] 2025-06-04 13:18:14,488 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-04 15:20:26] 2025-06-04 13:18:14,504 | INFO     | sufficient remaining disk space (1648997957632 B)
[2025-06-04 15:20:26] 2025-06-04 13:18:14,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:20:26] 2025-06-04 13:18:14,505 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:20:26] 2025-06-04 13:18:14,505 | INFO     | update_server=False
[2025-06-04 15:20:26] 2025-06-04 13:18:14,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:20:26] 2025-06-04 13:18:14,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:20:26] 2025-06-04 13:18:14,506 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 15:20:26] 2025-06-04 13:18:14,506 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:20:26] 2025-06-04 13:18:14,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:20:26] 2025-06-04 13:18:14,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:20:26] 2025-06-04 13:18:14,670 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 15:20:26] 2025-06-04 13:18:14,671 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 15:20:26] 2025-06-04 13:18:14,671 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:20:26] 2025-06-04 13:18:14,671 | INFO     | will abort loop
[2025-06-04 15:20:26] 2025-06-04 13:18:14,717 | INFO     | all data control threads have been joined
[2025-06-04 15:20:26] 2025-06-04 13:18:15,010 | INFO     | all payload control threads have been joined
[2025-06-04 15:20:26] 2025-06-04 13:18:15,507 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:15,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:20:26] 2025-06-04 13:18:15,518 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:15,559 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:15,672 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:15,723 | INFO     | [data] control thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:15,725 | INFO     | all job control threads have been joined
[2025-06-04 15:20:26] 2025-06-04 13:18:15,788 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:15,819 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:16,016 | INFO     | [payload] control thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:16,466 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:16,729 | INFO     | [job] control thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:16,855 | INFO     | [job] validate thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:16,887 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:17,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:20:26] 2025-06-04 13:18:17,519 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:18,335 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:18,508 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:24,672 | INFO     | job.realtimelogging is not enabled
[2025-06-04 15:20:26] 2025-06-04 13:18:25,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:20:26] 2025-06-04 13:18:26,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23083911636800)>', '<ExcThread(monitor, started 23083658184448)>']
[2025-06-04 15:20:26] 2025-06-04 13:18:26,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:20:26] 2025-06-04 13:18:26,568 | INFO     | [monitor] control thread has ended
[2025-06-04 15:20:26] 2025-06-04 13:18:31,488 | INFO     | all workflow threads have been joined
[2025-06-04 15:20:26] 2025-06-04 13:18:31,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:20:26] 2025-06-04 13:18:31,489 | INFO     | traces error code: 0
[2025-06-04 15:20:26] 2025-06-04 13:18:31,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:20:26] 2025-06-04 13:18:31,635 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:20:26] 2025-06-04 13:18:31,638 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:20:26] 2025-06-04 13:18:31,640 [wrapper] pilotpid: 2085328
[2025-06-04 15:20:26] 2025-06-04 13:18:31,643 [wrapper] Pilot exit status: 0
[2025-06-04 15:20:26] 2025-06-04 13:18:31,653 [wrapper] pandaids: 6677375641
[2025-06-04 15:20:26] 2025-06-04 13:18:31,711 [wrapper] cleanup supervisor_pilot 2272653 2085329
[2025-06-04 15:20:26] 2025-06-04 13:18:31,714 [wrapper] Test setup, not cleaning
[2025-06-04 15:20:26] 2025-06-04 13:18:31,717 [wrapper] apfmon messages muted
[2025-06-04 15:20:26] 2025-06-04 13:18:31,720 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:20:26] 2025-06-04 13:18:31,722 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:20:26]  *** Error codes and diagnostics ***
[2025-06-04 15:20:26]     "exeErrorCode": 0,
[2025-06-04 15:20:26]     "exeErrorDiag": "",
[2025-06-04 15:20:26]     "pilotErrorCode": 0,
[2025-06-04 15:20:26]     "pilotErrorDiag": "",
[2025-06-04 15:20:26]  *** Listing of results directory ***
[2025-06-04 15:20:26] total 389064
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc      5111 Jun  2 17:48 queuedata.json
[2025-06-04 15:20:26] -rwx------ 1 boinc boinc     37140 Jun  2 17:48 runpilot2-wrapper.sh
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc       100 Jun  4 12:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:20:26] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 12:07 run_atlas
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc       105 Jun  4 12:07 job.xml
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc      6422 Jun  4 12:07 init_data.xml
[2025-06-04 15:20:26] -rw-r--r-- 2 boinc boinc 217145083 Jun  4 12:07 EVNT.45006593._000003.pool.root.1
[2025-06-04 15:20:26] -rw-r--r-- 2 boinc boinc     15093 Jun  4 12:07 start_atlas.sh
[2025-06-04 15:20:26] drwxrwx--x 2 boinc boinc      4096 Jun  4 12:07 shared
[2025-06-04 15:20:26] -rw-r--r-- 2 boinc boinc    508871 Jun  4 12:07 input.tar.gz
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc         0 Jun  4 12:07 boinc_lockfile
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc      2518 Jun  4 12:07 pandaJob.out
[2025-06-04 15:20:26] -rw------- 1 boinc boinc    986766 Jun  4 12:07 agis_schedconf.cvmfs.json
[2025-06-04 15:20:26] drwx------ 4 boinc boinc      4096 Jun  4 12:07 pilot3
[2025-06-04 15:20:26] -rw------- 1 boinc boinc 174679949 Jun  4 15:17 HITS.45006595._000156.pool.root.1
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc       529 Jun  4 15:17 boinc_task_state.xml
[2025-06-04 15:20:26] -rw------- 1 boinc boinc        95 Jun  4 15:17 pilot_heartbeat.json
[2025-06-04 15:20:26] -rw------- 1 boinc boinc      1037 Jun  4 15:18 memory_monitor_summary.json
[2025-06-04 15:20:26] -rw------- 1 boinc boinc   1598969 Jun  4 15:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:20:26] -rw------- 1 boinc boinc    298996 Jun  4 15:18 log.45006595._000156.job.log.tgz.1
[2025-06-04 15:20:26] -rw------- 1 boinc boinc      7736 Jun  4 15:18 heartbeat.json
[2025-06-04 15:20:26] -rw------- 1 boinc boinc      4745 Jun  4 15:18 pilotlog.txt
[2025-06-04 15:20:26] -rw------- 1 boinc boinc   1078007 Jun  4 15:18 log.45006595._000156.job.log.1
[2025-06-04 15:20:26] -rw------- 1 boinc boinc       357 Jun  4 15:18 output.list
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc       620 Jun  4 15:18 runtime_log
[2025-06-04 15:20:26] -rw------- 1 boinc boinc   1392640 Jun  4 15:18 result.tar.gz
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc      9026 Jun  4 15:18 runtime_log.err
[2025-06-04 15:20:26] -rw------- 1 boinc boinc       665 Jun  4 15:18 Yx7NDmtZMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZveKDmmBDeFo.diag
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc        26 Jun  4 15:20 wrapper_checkpoint.txt
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc      8192 Jun  4 15:20 boinc_mmap_file
[2025-06-04 15:20:26] -rw-r--r-- 1 boinc boinc     20881 Jun  4 15:20 stderr.txt
[2025-06-04 15:20:26] HITS file was successfully produced:
[2025-06-04 15:20:26] -rw------- 1 boinc boinc 174679949 Jun  4 15:17 shared/HITS.pool.root.1
[2025-06-04 15:20:26]  *** Contents of shared directory: ***
[2025-06-04 15:20:26] total 384524
[2025-06-04 15:20:26] -rw-r--r-- 2 boinc boinc 217145083 Jun  4 12:07 ATLAS.root_0
[2025-06-04 15:20:26] -rw-r--r-- 2 boinc boinc     15093 Jun  4 12:07 start_atlas.sh
[2025-06-04 15:20:26] -rw-r--r-- 2 boinc boinc    508871 Jun  4 12:07 input.tar.gz
[2025-06-04 15:20:26] -rw------- 1 boinc boinc 174679949 Jun  4 15:17 HITS.pool.root.1
[2025-06-04 15:20:26] -rw------- 1 boinc boinc   1392640 Jun  4 15:18 result.tar.gz
15:20:28 (2081743): run_atlas exited; CPU time 43983.446065
15:20:28 (2081743): called boinc_finish(0)

</stderr_txt>
]]>

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