Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:48 (1151538): wrapper (7.7.26015): starting
16:32:48 (1151538): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 16:32:48] Arguments: --nthreads 4
[2025-06-04 16:32:48] Threads: 4
[2025-06-04 16:32:48] Checking for CVMFS
[2025-06-04 16:32:48] No cvmfs_config command found, will try listing directly
[2025-06-04 16:32:48] CVMFS is ok
[2025-06-04 16:32:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:32:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:32:48] Further information can be found at the LHC@home message board.
[2025-06-04 16:32:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:32:48] Checking for apptainer binary...
[2025-06-04 16:32:48] which: no apptainer in ((null))
[2025-06-04 16:32:48] apptainer is not installed, using version from CVMFS
[2025-06-04 16:32:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:32:48] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2025-06-04 16:32:48] apptainer works
[2025-06-04 16:32:48] Set ATHENA_PROC_NUMBER=4
[2025-06-04 16:32:48] Set ATHENA_CORE_NUMBER=4
[2025-06-04 16:32:48] Starting ATLAS job with PandaID=6677388790
[2025-06-04 16:32:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 19:40:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 19:40:38] 2025-06-04 17:39:34,116 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2099401/.job.ad'
[2025-06-04 19:40:38] 2025-06-04 17:39:34,116 | INFO     | total number of processed events: 400 (read)
[2025-06-04 19:40:38] 2025-06-04 17:39:34,119 | INFO     | executing command: lscpu
[2025-06-04 19:40:38] 2025-06-04 17:39:34,168 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 19:40:38] 2025-06-04 17:39:35,834 | INFO     | monitor loop #816: job 0:6677388790 is in state 'finished'
[2025-06-04 19:40:38] 2025-06-04 17:39:35,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,122 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 19:40:38] 2025-06-04 17:39:38,122 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6677388790/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,123 | INFO     | extracted standard info from prmon json
[2025-06-04 19:40:38] 2025-06-04 17:39:38,123 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 19:40:38] 2025-06-04 17:39:38,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 19:40:38] 2025-06-04 17:39:38,124 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 19:40:38] 2025-06-04 17:39:38,124 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 19:40:38] 2025-06-04 17:39:38,128 | INFO     | fitting pss+swap vs Time
[2025-06-04 19:40:38] 2025-06-04 17:39:38,129 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,130 | INFO     | sum of deviations: 30821917496.0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,130 | INFO     | mean x: 1749053159.0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,130 | INFO     | mean y: 2310988.8961748634
[2025-06-04 19:40:38] 2025-06-04 17:39:38,130 | INFO     | -- intersect: -28366683184.034607
[2025-06-04 19:40:38] 2025-06-04 17:39:38,130 | INFO     | intersect: -28366683184.034607
[2025-06-04 19:40:38] 2025-06-04 17:39:38,131 | INFO     | chi2: 1.7481681728826992
[2025-06-04 19:40:38] 2025-06-04 17:39:38,131 | INFO     | sum of square deviations: 1748737904.5
[2025-06-04 19:40:38] 2025-06-04 17:39:38,132 | INFO     | sum of deviations: 29947863044.5
[2025-06-04 19:40:38] 2025-06-04 17:39:38,132 | INFO     | mean x: 1749053006.5
[2025-06-04 19:40:38] 2025-06-04 17:39:38,133 | INFO     | mean y: 2310109.129213483
[2025-06-04 19:40:38] 2025-06-04 17:39:38,133 | INFO     | -- intersect: -29950949188.014915
[2025-06-04 19:40:38] 2025-06-04 17:39:38,133 | INFO     | intersect: -29950949188.014915
[2025-06-04 19:40:38] 2025-06-04 17:39:38,133 | INFO     | chi2: 1.749341600881043
[2025-06-04 19:40:38] 2025-06-04 17:39:38,133 | INFO     | current chi2=1.749341600881043 (change=-0.06712329034161416 %)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,133 | INFO     | right removable region: 177
[2025-06-04 19:40:38] 2025-06-04 17:39:38,134 | INFO     | sum of square deviations: 1748737904.5
[2025-06-04 19:40:38] 2025-06-04 17:39:38,135 | INFO     | sum of deviations: -1438587095.0000002
[2025-06-04 19:40:38] 2025-06-04 17:39:38,135 | INFO     | mean x: 1749053311.5
[2025-06-04 19:40:38] 2025-06-04 17:39:38,135 | INFO     | mean y: 2343176.2471910114
[2025-06-04 19:40:38] 2025-06-04 17:39:38,135 | INFO     | -- intersect: 1441189738.6257532
[2025-06-04 19:40:38] 2025-06-04 17:39:38,135 | INFO     | intersect: 1441189738.6257532
[2025-06-04 19:40:38] 2025-06-04 17:39:38,136 | INFO     | chi2: 0.022828045622111166
[2025-06-04 19:40:38] 2025-06-04 17:39:38,136 | INFO     | current chi2=0.022828045622111166 (change=98.69417336522788 %)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,136 | INFO     | sum of square deviations: 1605470102.0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,137 | INFO     | sum of deviations: -1911989978.0000002
[2025-06-04 19:40:38] 2025-06-04 17:39:38,138 | INFO     | mean x: 1749053464.0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,138 | INFO     | mean y: 2343650.6011560694
[2025-06-04 19:40:38] 2025-06-04 17:39:38,138 | INFO     | -- intersect: 2085330241.2503438
[2025-06-04 19:40:38] 2025-06-04 17:39:38,138 | INFO     | intersect: 2085330241.2503438
[2025-06-04 19:40:38] 2025-06-04 17:39:38,138 | INFO     | chi2: 0.017551239549862874
[2025-06-04 19:40:38] 2025-06-04 17:39:38,138 | INFO     | current chi2=0.017551239549862874 (change=23.115452630501128 %)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,139 | INFO     | left removable region: 20
[2025-06-04 19:40:38] 2025-06-04 17:39:38,139 | INFO     | sum of square deviations: 1199940638.0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,140 | INFO     | sum of deviations: 2054356414.0000002
[2025-06-04 19:40:38] 2025-06-04 17:39:38,140 | INFO     | mean x: 1749053586.0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,140 | INFO     | mean y: 2338833.0382165606
[2025-06-04 19:40:38] 2025-06-04 17:39:38,140 | INFO     | -- intersect: -2992125508.8126683
[2025-06-04 19:40:38] 2025-06-04 17:39:38,140 | INFO     | intersect: -2992125508.8126683
[2025-06-04 19:40:38] 2025-06-04 17:39:38,141 | INFO     | chi2: 0.0030331648770328453
[2025-06-04 19:40:38] 2025-06-04 17:39:38,141 | INFO     | -- intersect: -2992125508.8126683
[2025-06-04 19:40:38] 2025-06-04 17:39:38,141 | INFO     | current memory leak: 1.71 B/s (using 157 data points, chi2=0.00)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,141 | INFO     | ..............................
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . Timing measurements:
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . get job = 0 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . initial setup = 1 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . payload setup = 7 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . stage-in = 0 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . payload execution = 11162 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . stage-out = 1 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | . log creation = 0 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,142 | INFO     | ..............................
[2025-06-04 19:40:38] 2025-06-04 17:39:38,254 | INFO     | 
[2025-06-04 19:40:38] 2025-06-04 17:39:38,254 | INFO     | job summary report
[2025-06-04 19:40:38] 2025-06-04 17:39:38,254 | INFO     | --------------------------------------------------
[2025-06-04 19:40:38] 2025-06-04 17:39:38,254 | INFO     | PanDA job id: 6677388790
[2025-06-04 19:40:38] 2025-06-04 17:39:38,254 | INFO     | task id: 45006595
[2025-06-04 19:40:38] 2025-06-04 17:39:38,254 | INFO     | errors: (none)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | pilot state: finished 
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | transexitcode: 0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | exeerrorcode: 0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | exeerrordiag: 
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | exitcode: 0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | exitmsg: OK
[2025-06-04 19:40:38] 2025-06-04 17:39:38,255 | INFO     | cpuconsumptiontime: 42544 s
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | nevents: 400
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | neventsw: 0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | pid: 1162326
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | pgrp: 1162326
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | corecount: 4
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | event service: False
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | sizes: {0: 2397169, 1: 2397368, 5: 2397574, 11: 2397630, 11173: 2426491, 11174: 2435454, 11177: 2435638, 11182: 2435808}
[2025-06-04 19:40:38] 2025-06-04 17:39:38,256 | INFO     | --------------------------------------------------
[2025-06-04 19:40:38] 2025-06-04 17:39:38,257 | INFO     | 
[2025-06-04 19:40:38] 2025-06-04 17:39:38,257 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-06-04 19:40:38] 2025-06-04 17:39:38,277 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,277 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,277 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,277 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,280 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 19:40:38] 2025-06-04 17:39:38,280 | INFO     | job 6677388790 has completed (purged errors)
[2025-06-04 19:40:38] 2025-06-04 17:39:38,280 | INFO     | overall cleanup function is called
[2025-06-04 19:40:38] 2025-06-04 17:39:39,288 | INFO     | --- collectZombieJob: --- 10, [1162326]
[2025-06-04 19:40:38] 2025-06-04 17:39:39,288 | INFO     | zombie collector waiting for pid 1162326
[2025-06-04 19:40:38] 2025-06-04 17:39:39,289 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 19:40:38] 2025-06-04 17:39:39,289 | INFO     | collected zombie processes
[2025-06-04 19:40:38] 2025-06-04 17:39:39,289 | INFO     | will attempt to kill all subprocesses of pid=1162326
[2025-06-04 19:40:38] 2025-06-04 17:39:39,620 | INFO     | process IDs to be killed: [1162326] (in reverse order)
[2025-06-04 19:40:38] 2025-06-04 17:39:39,699 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 19:40:38] 2025-06-04 17:39:39,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 19:40:38] 2025-06-04 17:39:39,710 | INFO     | did not find any defunct processes belonging to 1162326
[2025-06-04 19:40:38] 2025-06-04 17:39:39,720 | INFO     | did not find any defunct processes belonging to 1162326
[2025-06-04 19:40:38] 2025-06-04 17:39:39,721 | INFO     | ready for new job
[2025-06-04 19:40:38] 2025-06-04 17:39:39,721 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 19:40:38] 2025-06-04 17:39:39,723 | INFO     | **************************************
[2025-06-04 19:40:38] 2025-06-04 17:39:39,723 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 19:40:38] 2025-06-04 17:39:39,723 | INFO     | **************************************
[2025-06-04 19:40:38] 2025-06-04 17:39:39,723 | INFO     | 
[2025-06-04 19:40:38] 2025-06-04 17:39:39,726 | INFO     | architecture information:
[2025-06-04 19:40:38] 2025-06-04 17:39:39,726 | INFO     | executing command: cat /etc/os-release
[2025-06-04 19:40:38] 2025-06-04 17:39:39,738 | INFO     | cat /etc/os-release:
[2025-06-04 19:40:38] NAME="CentOS Linux"
[2025-06-04 19:40:38] VERSION="7 (Core)"
[2025-06-04 19:40:38] ID="centos"
[2025-06-04 19:40:38] ID_LIKE="rhel fedora"
[2025-06-04 19:40:38] VERSION_ID="7"
[2025-06-04 19:40:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 19:40:38] ANSI_COLOR="0;31"
[2025-06-04 19:40:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 19:40:38] HOME_URL="https://www.centos.org/"
[2025-06-04 19:40:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 19:40:38] 
[2025-06-04 19:40:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 19:40:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 19:40:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 19:40:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 19:40:38] 
[2025-06-04 19:40:38] 2025-06-04 17:39:39,739 | INFO     | **************************************
[2025-06-04 19:40:38] 2025-06-04 17:39:40,242 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-06-04 19:40:38] 2025-06-04 17:39:40,259 | INFO     | sufficient remaining disk space (1648360423424 B)
[2025-06-04 19:40:38] 2025-06-04 17:39:40,260 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 19:40:38] 2025-06-04 17:39:40,260 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 19:40:38] 2025-06-04 17:39:40,260 | INFO     | update_server=False
[2025-06-04 19:40:38] 2025-06-04 17:39:40,260 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 19:40:38] 2025-06-04 17:39:40,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:40:38] 2025-06-04 17:39:40,261 | INFO     | aborting loop
[2025-06-04 19:40:38] 2025-06-04 17:39:40,349 | INFO     | all payload control threads have been joined
[2025-06-04 19:40:38] 2025-06-04 17:39:40,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 19:40:38] 2025-06-04 17:39:40,833 | INFO     | PID=1155530 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 19:40:38] 2025-06-04 17:39:40,833 | INFO     | .. there are 4 such processes running
[2025-06-04 19:40:38] 2025-06-04 17:39:40,833 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 19:40:38] 2025-06-04 17:39:40,833 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 19:40:38] 2025-06-04 17:39:40,833 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 19:40:38] 2025-06-04 17:39:40,950 | INFO     | all job control threads have been joined
[2025-06-04 19:40:38] 2025-06-04 17:39:41,266 | INFO     | [job] retrieve thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:41,266 | INFO     | [job] job monitor thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:41,266 | INFO     | [data] copytool_in thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:41,299 | INFO     | all data control threads have been joined
[2025-06-04 19:40:38] 2025-06-04 17:39:41,355 | INFO     | [payload] control thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:41,400 | INFO     | [payload] failed_post thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:41,921 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:41,955 | INFO     | [job] control thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:41,980 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:42,037 | INFO     | [job] validate thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:42,304 | INFO     | [data] control thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:42,423 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:42,622 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:42,749 | INFO     | [data] copytool_out thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:42,835 | INFO     | [payload] validate_post thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:43,265 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:40:38] 2025-06-04 17:39:43,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 19:40:38] 2025-06-04 17:39:44,270 | INFO     | [job] queue monitor thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:47,636 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 19:40:38] 2025-06-04 17:39:49,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22900954810176)>', '<ExcThread(monitor, started 22900713154304)>']
[2025-06-04 19:40:38] 2025-06-04 17:39:49,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 19:40:38] 2025-06-04 17:39:49,874 | INFO     | [monitor] control thread has ended
[2025-06-04 19:40:38] 2025-06-04 17:39:54,719 | INFO     | all workflow threads have been joined
[2025-06-04 19:40:38] 2025-06-04 17:39:54,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 19:40:38] 2025-06-04 17:39:54,719 | INFO     | traces error code: 0
[2025-06-04 19:40:38] 2025-06-04 17:39:54,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 19:40:38] 2025-06-04 17:39:54,850 [wrapper] ==== pilot stdout END ====
[2025-06-04 19:40:38] 2025-06-04 17:39:54,853 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 19:40:38] 2025-06-04 17:39:54,856 [wrapper] pilotpid: 1155530
[2025-06-04 19:40:38] 2025-06-04 17:39:54,858 [wrapper] Pilot exit status: 0
[2025-06-04 19:40:38] 2025-06-04 17:39:54,867 [wrapper] pandaids: 6677388790
[2025-06-04 19:40:38] 2025-06-04 17:39:54,918 [wrapper] cleanup supervisor_pilot 1341865 1155531
[2025-06-04 19:40:38] 2025-06-04 17:39:54,921 [wrapper] Test setup, not cleaning
[2025-06-04 19:40:38] 2025-06-04 17:39:54,923 [wrapper] apfmon messages muted
[2025-06-04 19:40:38] 2025-06-04 17:39:54,925 [wrapper] ==== wrapper stdout END ====
[2025-06-04 19:40:38] 2025-06-04 17:39:54,927 [wrapper] ==== wrapper stderr END ====
[2025-06-04 19:40:38]  *** Error codes and diagnostics ***
[2025-06-04 19:40:38]     "exeErrorCode": 0,
[2025-06-04 19:40:38]     "exeErrorDiag": "",
[2025-06-04 19:40:38]     "pilotErrorCode": 0,
[2025-06-04 19:40:38]     "pilotErrorDiag": "",
[2025-06-04 19:40:38]  *** Listing of results directory ***
[2025-06-04 19:40:38] total 384164
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc    495897 Jun  2 19:25 pilot3.tar.gz
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc      5111 Jun  2 19:42 queuedata.json
[2025-06-04 19:40:38] -rwx------ 1 boinc boinc     37140 Jun  2 19:43 runpilot2-wrapper.sh
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc       100 Jun  4 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 19:40:38] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 16:32 run_atlas
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc       105 Jun  4 16:32 job.xml
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc      6422 Jun  4 16:32 init_data.xml
[2025-06-04 19:40:38] -rw-r--r-- 2 boinc boinc 212135956 Jun  4 16:32 EVNT.45006593._000246.pool.root.1
[2025-06-04 19:40:38] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:32 start_atlas.sh
[2025-06-04 19:40:38] drwxrwx--x 2 boinc boinc      4096 Jun  4 16:32 shared
[2025-06-04 19:40:38] -rw-r--r-- 2 boinc boinc    508875 Jun  4 16:32 input.tar.gz
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc         0 Jun  4 16:32 boinc_lockfile
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc      2518 Jun  4 16:32 pandaJob.out
[2025-06-04 19:40:38] -rw------- 1 boinc boinc    986819 Jun  4 16:32 agis_schedconf.cvmfs.json
[2025-06-04 19:40:38] drwx------ 4 boinc boinc      4096 Jun  4 16:32 pilot3
[2025-06-04 19:40:38] -rw------- 1 boinc boinc 174725645 Jun  4 19:38 HITS.45006595._006128.pool.root.1
[2025-06-04 19:40:38] -rw------- 1 boinc boinc        95 Jun  4 19:39 pilot_heartbeat.json
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc       528 Jun  4 19:39 boinc_task_state.xml
[2025-06-04 19:40:38] -rw------- 1 boinc boinc      1037 Jun  4 19:39 memory_monitor_summary.json
[2025-06-04 19:40:38] -rw------- 1 boinc boinc   1598969 Jun  4 19:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 19:40:38] -rw------- 1 boinc boinc    292415 Jun  4 19:39 log.45006595._006128.job.log.tgz.1
[2025-06-04 19:40:38] -rw------- 1 boinc boinc      7724 Jun  4 19:39 heartbeat.json
[2025-06-04 19:40:38] -rw------- 1 boinc boinc      4759 Jun  4 19:39 pilotlog.txt
[2025-06-04 19:40:38] -rw------- 1 boinc boinc   1052111 Jun  4 19:39 log.45006595._006128.job.log.1
[2025-06-04 19:40:38] -rw------- 1 boinc boinc       357 Jun  4 19:39 output.list
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc       620 Jun  4 19:39 runtime_log
[2025-06-04 19:40:38] -rw------- 1 boinc boinc   1361920 Jun  4 19:39 result.tar.gz
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc      9026 Jun  4 19:39 runtime_log.err
[2025-06-04 19:40:38] -rw------- 1 boinc boinc       665 Jun  4 19:39 rIINDm3MOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXpfKDmFdkXOo.diag
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc        26 Jun  4 19:40 wrapper_checkpoint.txt
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc      8192 Jun  4 19:40 boinc_mmap_file
[2025-06-04 19:40:38] -rw-r--r-- 1 boinc boinc     21052 Jun  4 19:40 stderr.txt
[2025-06-04 19:40:38] HITS file was successfully produced:
[2025-06-04 19:40:38] -rw------- 1 boinc boinc 174725645 Jun  4 19:38 shared/HITS.pool.root.1
[2025-06-04 19:40:38]  *** Contents of shared directory: ***
[2025-06-04 19:40:38] total 379656
[2025-06-04 19:40:38] -rw-r--r-- 2 boinc boinc 212135956 Jun  4 16:32 ATLAS.root_0
[2025-06-04 19:40:38] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:32 start_atlas.sh
[2025-06-04 19:40:38] -rw-r--r-- 2 boinc boinc    508875 Jun  4 16:32 input.tar.gz
[2025-06-04 19:40:38] -rw------- 1 boinc boinc 174725645 Jun  4 19:38 HITS.pool.root.1
[2025-06-04 19:40:38] -rw------- 1 boinc boinc   1361920 Jun  4 19:39 result.tar.gz
19:40:40 (1151538): run_atlas exited; CPU time 42989.784111
19:40:40 (1151538): called boinc_finish(0)

</stderr_txt>
]]>

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