Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:06:34 (20230): wrapper (7.7.26015): starting
16:06:34 (20230): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 16:06:34] Arguments: --nthreads 8
[2025-06-02 16:06:34] Threads: 8
[2025-06-02 16:06:34] Checking for CVMFS
[2025-06-02 16:06:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 16:06:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 16:06:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 16:06:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 16:06:35] 2.11.2.0 2931 33212 76604 146717 1 56 15829499 20275200 1 130560 0 9522596 99.973 6071198 7514 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-02 16:06:35] CVMFS is ok
[2025-06-02 16:06:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 16:06:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 16:06:35] Further information can be found at the LHC@home message board.
[2025-06-02 16:06:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 16:06:35] Checking for apptainer binary...
[2025-06-02 16:06:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 16:06:35] Running /usr/bin/apptainer --version
[2025-06-02 16:06:35] apptainer version 1.3.2-1.el7
[2025-06-02 16:06:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 16:06:36] c-115-5.aglt2.org
[2025-06-02 16:06:36] apptainer works
[2025-06-02 16:06:36] Set ATHENA_PROC_NUMBER=8
[2025-06-02 16:06:36] Set ATHENA_CORE_NUMBER=8
[2025-06-02 16:06:36] Starting ATLAS job with PandaID=6677382198
[2025-06-02 16:06:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 17:47:33]  *** The last 200 lines of the pilot log: ***
[2025-06-02 17:47:33]  protocol_id=None
[2025-06-02 17:47:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-02 17:47:33]  replicas=None
[2025-06-02 17:47:33]  scope=mc23_13p6TeV
[2025-06-02 17:47:33]  status=None
[2025-06-02 17:47:33]  status_code=0
[2025-06-02 17:47:33]  storage_token=
[2025-06-02 17:47:33]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677382198/log.45006595._002948.job.log.tgz.1
[2025-06-02 17:47:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/00/log.45006595._002948.job.log.tgz.1
[2025-06-02 17:47:33]  workdir=None
[2025-06-02 17:47:33] ]
[2025-06-02 17:47:33] 2025-06-02 21:47:02,810 | INFO     | transferring file log.45006595._002948.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677382198/log.45006595._002948.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-02 17:47:33] 2025-06-02 21:47:02,810 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677382198/log.45006595._002948.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._002948.job
[2025-06-02 17:47:33] 2025-06-02 21:47:02,837 | INFO     | adding to output.list: log.45006595._002948.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/00/log.45006595._002948.job.log.tg
[2025-06-02 17:47:33] 2025-06-02 21:47:02,838 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-02 17:47:33] 2025-06-02 21:47:02,838 | INFO     | summary of transferred files:
[2025-06-02 17:47:33] 2025-06-02 21:47:02,838 | INFO     |  -- lfn=log.45006595._002948.job.log.tgz.1, status_code=0, status=transferred
[2025-06-02 17:47:33] 2025-06-02 21:47:02,839 | INFO     | stage-out finished correctly
[2025-06-02 17:47:33] 2025-06-02 21:47:04,402 | WARNING  | process 30382 can no longer be monitored (due to stat problems) - aborting
[2025-06-02 17:47:33] 2025-06-02 21:47:04,403 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677382198/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 17:47:33] 2025-06-02 21:47:04,479 | INFO     | number of running child processes to parent process 30382: 1
[2025-06-02 17:47:33] 2025-06-02 21:47:04,479 | INFO     | maximum number of monitored processes: 6
[2025-06-02 17:47:33] 2025-06-02 21:47:06,412 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-02 17:47:33] 2025-06-02 21:47:06,821 | INFO     | job 6677382198 has state=finished
[2025-06-02 17:47:33] 2025-06-02 21:47:06,821 | INFO     | preparing for final server update for job 6677382198 in state='finished'
[2025-06-02 17:47:33] 2025-06-02 21:47:06,822 | INFO     | this job has now completed (state=finished)
[2025-06-02 17:47:33] 2025-06-02 21:47:06,822 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-02 17:47:33] 2025-06-02 21:47:06,822 | INFO     | log transfer has been attempted: DONE
[2025-06-02 17:47:33] 2025-06-02 21:47:06,823 | INFO     | job 6677382198 has finished - writing final server update
[2025-06-02 17:47:33] 2025-06-02 21:47:06,823 | INFO     | total number of processed events: 400 (read)
[2025-06-02 17:47:33] 2025-06-02 21:47:06,825 | INFO     | executing command: lscpu
[2025-06-02 17:47:33] 2025-06-02 21:47:06,854 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-02 17:47:33] 2025-06-02 21:47:06,988 | INFO     | monitor loop #446: job 0:6677382198 is in state 'finished'
[2025-06-02 17:47:33] 2025-06-02 21:47:06,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 17:47:33] 2025-06-02 21:47:09,492 | INFO     | monitor loop #447: job 0:6677382198 is in state 'finished'
[2025-06-02 17:47:33] 2025-06-02 21:47:09,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 17:47:33] 2025-06-02 21:47:10,913 | INFO     | PID=23829 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-02 17:47:33] 2025-06-02 21:47:11,993 | INFO     | monitor loop #448: job 0:6677382198 is in state 'finished'
[2025-06-02 17:47:33] 2025-06-02 21:47:11,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 17:47:33] 2025-06-02 21:47:13,631 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-02 17:47:33] 2025-06-02 21:47:13,631 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677382198/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 17:47:33] 2025-06-02 21:47:13,632 | INFO     | extracted standard info from prmon json
[2025-06-02 17:47:33] 2025-06-02 21:47:13,632 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 17:47:33] 2025-06-02 21:47:13,632 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 17:47:33] 2025-06-02 21:47:13,633 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 17:47:33] 2025-06-02 21:47:13,633 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 17:47:33] 2025-06-02 21:47:13,636 | INFO     | fitting pss+swap vs Time
[2025-06-02 17:47:33] 2025-06-02 21:47:13,637 | INFO     | sum of square deviations: 233641590.0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,637 | INFO     | sum of deviations: -659603492.0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,637 | INFO     | mean x: 1748897895.0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,637 | INFO     | mean y: 2495172.7252747254
[2025-06-02 17:47:33] 2025-06-02 21:47:13,637 | INFO     | -- intersect: 4939883069.689379
[2025-06-02 17:47:33] 2025-06-02 21:47:13,638 | INFO     | intersect: 4939883069.689379
[2025-06-02 17:47:33] 2025-06-02 21:47:13,638 | INFO     | chi2: 0.0270237600485448
[2025-06-02 17:47:33] 2025-06-02 21:47:13,638 | INFO     | -- intersect: 4939883069.689379
[2025-06-02 17:47:33] 2025-06-02 21:47:13,638 | INFO     | current memory leak: -2.82 B/s (using 91 data points, chi2=0.03)
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | ..............................
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . Timing measurements:
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . get job = 0 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . initial setup = 2 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . payload setup = 11 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . stage-in = 0 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . payload execution = 5981 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . stage-out = 0 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | . log creation = 0 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,639 | INFO     | ..............................
[2025-06-02 17:47:33] 2025-06-02 21:47:13,725 | INFO     | 
[2025-06-02 17:47:33] 2025-06-02 21:47:13,725 | INFO     | job summary report
[2025-06-02 17:47:33] 2025-06-02 21:47:13,725 | INFO     | --------------------------------------------------
[2025-06-02 17:47:33] 2025-06-02 21:47:13,726 | INFO     | PanDA job id: 6677382198
[2025-06-02 17:47:33] 2025-06-02 21:47:13,726 | INFO     | task id: 45006595
[2025-06-02 17:47:33] 2025-06-02 21:47:13,726 | INFO     | errors: (none)
[2025-06-02 17:47:33] 2025-06-02 21:47:13,726 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 17:47:33] 2025-06-02 21:47:13,726 | INFO     | pilot state: finished 
[2025-06-02 17:47:33] 2025-06-02 21:47:13,726 | INFO     | transexitcode: 0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,727 | INFO     | exeerrorcode: 0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,727 | INFO     | exeerrordiag: 
[2025-06-02 17:47:33] 2025-06-02 21:47:13,727 | INFO     | exitcode: 0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,727 | INFO     | exitmsg: OK
[2025-06-02 17:47:33] 2025-06-02 21:47:13,727 | INFO     | cpuconsumptiontime: 44203 s
[2025-06-02 17:47:33] 2025-06-02 21:47:13,727 | INFO     | nevents: 400
[2025-06-02 17:47:33] 2025-06-02 21:47:13,727 | INFO     | neventsw: 0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,728 | INFO     | pid: 30382
[2025-06-02 17:47:33] 2025-06-02 21:47:13,728 | INFO     | pgrp: 30382
[2025-06-02 17:47:33] 2025-06-02 21:47:13,728 | INFO     | corecount: 8
[2025-06-02 17:47:33] 2025-06-02 21:47:13,728 | INFO     | event service: False
[2025-06-02 17:47:33] 2025-06-02 21:47:13,728 | INFO     | sizes: {0: 2405007, 1: 2405206, 6: 2405412, 11: 2405440, 5993: 2432013, 5994: 2440954, 5998: 2441138, 6005: 2441308}
[2025-06-02 17:47:33] 2025-06-02 21:47:13,728 | INFO     | --------------------------------------------------
[2025-06-02 17:47:33] 2025-06-02 21:47:13,729 | INFO     | 
[2025-06-02 17:47:33] 2025-06-02 21:47:13,729 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-02 17:47:33] 2025-06-02 21:47:13,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,759 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,759 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,759 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,759 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,762 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 17:47:33] 2025-06-02 21:47:13,762 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,762 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 17:47:33] 2025-06-02 21:47:13,762 | INFO     | job 6677382198 has completed (purged errors)
[2025-06-02 17:47:33] 2025-06-02 21:47:13,763 | INFO     | overall cleanup function is called
[2025-06-02 17:47:33] 2025-06-02 21:47:14,770 | INFO     | --- collectZombieJob: --- 10, [30382]
[2025-06-02 17:47:33] 2025-06-02 21:47:14,770 | INFO     | zombie collector waiting for pid 30382
[2025-06-02 17:47:33] 2025-06-02 21:47:14,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 17:47:33] 2025-06-02 21:47:14,770 | INFO     | collected zombie processes
[2025-06-02 17:47:33] 2025-06-02 21:47:14,770 | INFO     | will attempt to kill all subprocesses of pid=30382
[2025-06-02 17:47:33] 2025-06-02 21:47:14,854 | INFO     | process IDs to be killed: [30382] (in reverse order)
[2025-06-02 17:47:33] 2025-06-02 21:47:14,908 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 17:47:33] 2025-06-02 21:47:14,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 17:47:33] 2025-06-02 21:47:14,913 | INFO     | did not find any defunct processes belonging to 30382
[2025-06-02 17:47:33] 2025-06-02 21:47:14,916 | INFO     | did not find any defunct processes belonging to 30382
[2025-06-02 17:47:33] 2025-06-02 21:47:14,917 | INFO     | ready for new job
[2025-06-02 17:47:33] 2025-06-02 21:47:14,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 17:47:33] 2025-06-02 21:47:14,919 | INFO     | **************************************
[2025-06-02 17:47:33] 2025-06-02 21:47:14,919 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 17:47:33] 2025-06-02 21:47:14,919 | INFO     | **************************************
[2025-06-02 17:47:33] 2025-06-02 21:47:14,919 | INFO     | 
[2025-06-02 17:47:33] 2025-06-02 21:47:14,919 | INFO     | architecture information:
[2025-06-02 17:47:33] 2025-06-02 21:47:14,920 | INFO     | executing command: cat /etc/os-release
[2025-06-02 17:47:33] 2025-06-02 21:47:14,936 | INFO     | cat /etc/os-release:
[2025-06-02 17:47:33] NAME="CentOS Linux"
[2025-06-02 17:47:33] VERSION="7 (Core)"
[2025-06-02 17:47:33] ID="centos"
[2025-06-02 17:47:33] ID_LIKE="rhel fedora"
[2025-06-02 17:47:33] VERSION_ID="7"
[2025-06-02 17:47:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 17:47:33] ANSI_COLOR="0;31"
[2025-06-02 17:47:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 17:47:33] HOME_URL="https://www.centos.org/"
[2025-06-02 17:47:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 17:47:33] 
[2025-06-02 17:47:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 17:47:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 17:47:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 17:47:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 17:47:33] 
[2025-06-02 17:47:33] 2025-06-02 21:47:14,937 | INFO     | **************************************
[2025-06-02 17:47:33] 2025-06-02 21:47:15,439 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-02 17:47:33] 2025-06-02 21:47:15,460 | INFO     | sufficient remaining disk space (18647875584 B)
[2025-06-02 17:47:33] 2025-06-02 21:47:15,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 17:47:33] 2025-06-02 21:47:15,461 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 17:47:33] 2025-06-02 21:47:15,461 | INFO     | update_server=False
[2025-06-02 17:47:33] 2025-06-02 21:47:15,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 17:47:33] 2025-06-02 21:47:15,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 17:47:33] 2025-06-02 21:47:15,462 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 17:47:33] 2025-06-02 21:47:15,462 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 17:47:33] 2025-06-02 21:47:15,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 17:47:33] 2025-06-02 21:47:15,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 17:47:33] 2025-06-02 21:47:15,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 17:47:33] 2025-06-02 21:47:15,533 | INFO     | aborting loop
[2025-06-02 17:47:33] 2025-06-02 21:47:15,585 | INFO     | all data control threads have been joined
[2025-06-02 17:47:33] 2025-06-02 21:47:15,822 | INFO     | all payload control threads have been joined
[2025-06-02 17:47:33] 2025-06-02 21:47:15,948 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 17:47:33] 2025-06-02 21:47:16,391 | INFO     | all job control threads have been joined
[2025-06-02 17:47:33] 2025-06-02 21:47:16,467 | INFO     | [job] retrieve thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:16,467 | INFO     | [job] queue monitor thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:16,538 | INFO     | [job] job monitor thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:16,586 | INFO     | [data] control thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:16,702 | INFO     | [data] copytool_in thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:16,828 | INFO     | [payload] control thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:16,884 | INFO     | [job] validate thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:17,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 17:47:33] 2025-06-02 21:47:17,175 | INFO     | [payload] failed_post thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:17,265 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:17,392 | INFO     | [job] control thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:17,442 | INFO     | [payload] validate_post thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:17,547 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:17,954 | INFO     | [data] copytool_out thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:17,962 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:21,016 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:25,846 | INFO     | job.realtimelogging is not enabled
[2025-06-02 17:47:33] 2025-06-02 21:47:26,852 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 17:47:33] 2025-06-02 21:47:27,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140676283668288)>', '<ExcThread(monitor, started 140675379083008)>']
[2025-06-02 17:47:33] 2025-06-02 21:47:28,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 17:47:33] 2025-06-02 21:47:28,519 | INFO     | [monitor] control thread has ended
[2025-06-02 17:47:33] 2025-06-02 21:47:32,878 | INFO     | all workflow threads have been joined
[2025-06-02 17:47:33] 2025-06-02 21:47:32,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 17:47:33] 2025-06-02 21:47:32,879 | INFO     | traces error code: 0
[2025-06-02 17:47:33] 2025-06-02 21:47:32,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 17:47:33] 2025-06-02 21:47:32,997 [wrapper] ==== pilot stdout END ====
[2025-06-02 17:47:33] 2025-06-02 21:47:33,002 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 17:47:33] 2025-06-02 21:47:33,007 [wrapper] pilotpid: 23829
[2025-06-02 17:47:33] 2025-06-02 21:47:33,011 [wrapper] Pilot exit status: 0
[2025-06-02 17:47:33] 2025-06-02 21:47:33,030 [wrapper] pandaids: 6677382198
[2025-06-02 17:47:33] 2025-06-02 21:47:33,073 [wrapper] cleanup supervisor_pilot 20606 23830
[2025-06-02 17:47:33] 2025-06-02 21:47:33,078 [wrapper] Test setup, not cleaning
[2025-06-02 17:47:33] 2025-06-02 21:47:33,082 [wrapper] apfmon messages muted
[2025-06-02 17:47:33] 2025-06-02 21:47:33,087 [wrapper] ==== wrapper stdout END ====
[2025-06-02 17:47:33] 2025-06-02 21:47:33,092 [wrapper] ==== wrapper stderr END ====
[2025-06-02 17:47:33]  *** Error codes and diagnostics ***
[2025-06-02 17:47:33]     "exeErrorCode": 0,
[2025-06-02 17:47:33]     "exeErrorDiag": "",
[2025-06-02 17:47:33]     "pilotErrorCode": 0,
[2025-06-02 17:47:33]     "pilotErrorDiag": "",
[2025-06-02 17:47:33]  *** Listing of results directory ***
[2025-06-02 17:47:33] total 383904
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas    495897 Jun  2 11:59 pilot3.tar.gz
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas      5111 Jun  2 12:02 queuedata.json
[2025-06-02 17:47:33] -rwx------ 1 boincer umatlas     37140 Jun  2 12:03 runpilot2-wrapper.sh
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas       100 Jun  2 16:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 17:47:33] -rwxr-xr-x 1 boincer umatlas      7986 Jun  2 16:06 run_atlas
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas       105 Jun  2 16:06 job.xml
[2025-06-02 17:47:33] -rw-r--r-- 2 boincer umatlas 213472499 Jun  2 16:06 EVNT.45006593._000118.pool.root.1
[2025-06-02 17:47:33] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 16:06 start_atlas.sh
[2025-06-02 17:47:33] drwxrwx--x 2 boincer umatlas      4096 Jun  2 16:06 shared
[2025-06-02 17:47:33] -rw-r--r-- 2 boincer umatlas    508879 Jun  2 16:06 input.tar.gz
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas         0 Jun  2 16:06 boinc_lockfile
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas      2522 Jun  2 16:06 pandaJob.out
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas    988356 Jun  2 16:06 agis_schedconf.cvmfs.json
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas   1603667 Jun  2 16:06 agis_ddmendpoints.agis.ALL.json
[2025-06-02 17:47:33] drwx------ 4 boincer umatlas      4096 Jun  2 16:06 pilot3
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas 174035341 Jun  2 17:46 HITS.45006595._002948.pool.root.1
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas      5824 Jun  2 17:46 init_data.xml
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas       529 Jun  2 17:46 boinc_task_state.xml
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas      1050 Jun  2 17:47 memory_monitor_summary.json
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas    326738 Jun  2 17:47 log.45006595._002948.job.log.tgz.1
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas        95 Jun  2 17:47 pilot_heartbeat.json
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas      7738 Jun  2 17:47 heartbeat.json
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas        27 Jun  2 17:47 wrapper_checkpoint.txt
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas      8192 Jun  2 17:47 boinc_mmap_file
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas      4548 Jun  2 17:47 pilotlog.txt
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas    558578 Jun  2 17:47 log.45006595._002948.job.log.1
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas       357 Jun  2 17:47 output.list
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas       620 Jun  2 17:47 runtime_log
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas    901120 Jun  2 17:47 result.tar.gz
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas      8654 Jun  2 17:47 runtime_log.err
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas       657 Jun  2 17:47 5SHMDmznMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmglVKDmABj9Bo.diag
[2025-06-02 17:47:33] -rw-r--r-- 1 boincer umatlas     21823 Jun  2 17:47 stderr.txt
[2025-06-02 17:47:33] HITS file was successfully produced:
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas 174035341 Jun  2 17:46 shared/HITS.pool.root.1
[2025-06-02 17:47:33]  *** Contents of shared directory: ***
[2025-06-02 17:47:33] total 379836
[2025-06-02 17:47:33] -rw-r--r-- 2 boincer umatlas 213472499 Jun  2 16:06 ATLAS.root_0
[2025-06-02 17:47:33] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 16:06 start_atlas.sh
[2025-06-02 17:47:33] -rw-r--r-- 2 boincer umatlas    508879 Jun  2 16:06 input.tar.gz
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas 174035341 Jun  2 17:46 HITS.pool.root.1
[2025-06-02 17:47:33] -rw------- 1 boincer umatlas    901120 Jun  2 17:47 result.tar.gz
17:47:35 (20230): run_atlas exited; CPU time 44151.240284
17:47:35 (20230): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN