Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:28:45 (3323934): wrapper (7.7.26015): starting
12:28:45 (3323934): wrapper: running run_atlas (--nthreads 3)
[2025-06-03 12:28:45] Arguments: --nthreads 3
[2025-06-03 12:28:45] Threads: 3
[2025-06-03 12:28:45] Checking for CVMFS
[2025-06-03 12:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:28:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:28:46] 2.11.5.0 3218729 453 54340 146724 3 56 23424224 31457281 0 130560 0 286929 99.987 144322 130 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-03 12:28:46] CVMFS is ok
[2025-06-03 12:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:28:46] Checking for apptainer binary...
[2025-06-03 12:28:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:28:46] Running /usr/bin/apptainer --version
[2025-06-03 12:28:46] apptainer version 1.3.4-1.el9
[2025-06-03 12:28:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:28:46] testio001
[2025-06-03 12:28:46] apptainer works
[2025-06-03 12:28:46] Set ATHENA_PROC_NUMBER=3
[2025-06-03 12:28:46] Set ATHENA_CORE_NUMBER=3
[2025-06-03 12:28:46] Starting ATLAS job with PandaID=6677387724
[2025-06-03 12:28:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 14:21:11]  *** The last 200 lines of the pilot log: ***
[2025-06-03 14:21:11] 2025-06-03 05:20:50,817 | INFO     | -- intersect: -80126689929.45381
[2025-06-03 14:21:11] 2025-06-03 05:20:50,817 | INFO     | intersect: -80126689929.45381
[2025-06-03 14:21:11] 2025-06-03 05:20:50,817 | INFO     | chi2: 3.842957514630921
[2025-06-03 14:21:11] 2025-06-03 05:20:50,817 | INFO     | sum of square deviations: 346788374.6796111
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | sum of deviations: 18055103104.12621
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | mean x: 1748924497.3980582
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | mean y: 2337960.631067961
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | -- intersect: -91053229144.31367
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | intersect: -91053229144.31367
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | chi2: 3.850454625192545
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | current chi2=3.850454625192545 (change=-0.19508700091220618 %)
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | right removable region: 102
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | sum of square deviations: 346303101.3786411
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | sum of deviations: -4249217685.8349476
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | mean x: 1748924804.9223301
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | mean y: 2403918.145631068
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | -- intersect: 21462108387.109867
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | intersect: 21462108387.109867
[2025-06-03 14:21:11] 2025-06-03 05:20:50,818 | INFO     | chi2: 1.5214852585610508
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | current chi2=1.5214852585610508 (change=60.40848089606905 %)
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | sum of square deviations: 298212679.91836786
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | sum of deviations: -19745881167.897957
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | mean x: 1748924959.2040815
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | mean y: 2453639.7448979593
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | -- intersect: 115805927943.61374
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | intersect: 115805927943.61374
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | chi2: 0.41526820040555673
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | current chi2=0.41526820040555673 (change=72.70639343569468 %)
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | sum of square deviations: 254679794.32258055
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | sum of deviations: -20787495639.483868
[2025-06-03 14:21:11] 2025-06-03 05:20:50,819 | INFO     | mean x: 1748925113.6774194
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | mean y: 2456731.1505376343
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | -- intersect: 142753369778.8677
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | intersect: 142753369778.8677
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | chi2: 0.19507710582340704
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | current chi2=0.19507710582340704 (change=53.023827581092895 %)
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | sum of square deviations: 215471764.625
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | sum of deviations: -16780722043.375
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | mean x: 1748925268.375
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | mean y: 2440895.375
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | -- intersect: 136206963350.15044
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | intersect: 136206963350.15044
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | chi2: 0.19165750918028104
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | current chi2=0.19165750918028104 (change=1.752946163873055 %)
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | left removable region: 40
[2025-06-03 14:21:11] 2025-06-03 05:20:50,820 | INFO     | sum of square deviations: 73658995.48387094
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | sum of deviations: 187303597.22580644
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | mean x: 1748925707.483871
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | mean y: 2349002.2258064514
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | -- intersect: -4444902472.499335
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | intersect: -4444902472.499335
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | chi2: 1.9266406483893272e-05
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | -- intersect: -4444902472.499335
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | current memory leak: 2.54 B/s (using 62 data points, chi2=0.00)
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | ..............................
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . Timing measurements:
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . get job = 0 s
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . initial setup = 5 s
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . payload setup = 2 s
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . stage-in = 0 s
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . payload execution = 6618 s
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . stage-out = 0 s
[2025-06-03 14:21:11] 2025-06-03 05:20:50,821 | INFO     | . log creation = 0 s
[2025-06-03 14:21:11] 2025-06-03 05:20:50,822 | INFO     | ..............................
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | 
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | job summary report
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | --------------------------------------------------
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | PanDA job id: 6677387724
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | task id: 45006595
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | errors: (none)
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | pilot state: finished 
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | transexitcode: 0
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | exeerrorcode: 0
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | exeerrordiag: 
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | exitcode: 0
[2025-06-03 14:21:11] 2025-06-03 05:20:51,183 | INFO     | exitmsg: OK
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | cpuconsumptiontime: 16324 s
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | nevents: 400
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | neventsw: 0
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | pid: 3333861
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | pgrp: 3333861
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | corecount: 3
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | event service: False
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | sizes: {0: 2405006, 1: 2405205, 3: 2405411, 11: 2405439, 6625: 2432370, 6626: 2441495, 6702: 2441609}
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | --------------------------------------------------
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | 
[2025-06-03 14:21:11] 2025-06-03 05:20:51,184 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-06-03 14:21:11] 2025-06-03 05:20:51,193 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,193 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,193 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | job 6677387724 has completed (purged errors)
[2025-06-03 14:21:11] 2025-06-03 05:20:51,194 | INFO     | overall cleanup function is called
[2025-06-03 14:21:11] 2025-06-03 05:20:52,200 | INFO     | --- collectZombieJob: --- 10, [3333861]
[2025-06-03 14:21:11] 2025-06-03 05:20:52,200 | INFO     | zombie collector waiting for pid 3333861
[2025-06-03 14:21:11] 2025-06-03 05:20:52,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 14:21:11] 2025-06-03 05:20:52,200 | INFO     | collected zombie processes
[2025-06-03 14:21:11] 2025-06-03 05:20:52,200 | INFO     | will attempt to kill all subprocesses of pid=3333861
[2025-06-03 14:21:11] 2025-06-03 05:20:52,232 | INFO     | process IDs to be killed: [3333861] (in reverse order)
[2025-06-03 14:21:11] 2025-06-03 05:20:52,251 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 14:21:11] 2025-06-03 05:20:52,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 14:21:11] 2025-06-03 05:20:52,252 | INFO     | did not find any defunct processes belonging to 3333861
[2025-06-03 14:21:11] 2025-06-03 05:20:52,253 | INFO     | did not find any defunct processes belonging to 3333861
[2025-06-03 14:21:11] 2025-06-03 05:20:52,253 | INFO     | ready for new job
[2025-06-03 14:21:11] 2025-06-03 05:20:52,253 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 14:21:11] 2025-06-03 05:20:52,254 | INFO     | **************************************
[2025-06-03 14:21:11] 2025-06-03 05:20:52,254 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 14:21:11] 2025-06-03 05:20:52,254 | INFO     | **************************************
[2025-06-03 14:21:11] 2025-06-03 05:20:52,254 | INFO     | 
[2025-06-03 14:21:11] 2025-06-03 05:20:52,266 | INFO     | architecture information:
[2025-06-03 14:21:11] 2025-06-03 05:20:52,267 | INFO     | executing command: cat /etc/os-release
[2025-06-03 14:21:11] 2025-06-03 05:20:52,274 | INFO     | cat /etc/os-release:
[2025-06-03 14:21:11] NAME="CentOS Linux"
[2025-06-03 14:21:11] VERSION="7 (Core)"
[2025-06-03 14:21:11] ID="centos"
[2025-06-03 14:21:11] ID_LIKE="rhel fedora"
[2025-06-03 14:21:11] VERSION_ID="7"
[2025-06-03 14:21:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 14:21:11] ANSI_COLOR="0;31"
[2025-06-03 14:21:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 14:21:11] HOME_URL="https://www.centos.org/"
[2025-06-03 14:21:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 14:21:11] 
[2025-06-03 14:21:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 14:21:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 14:21:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 14:21:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 14:21:11] 
[2025-06-03 14:21:11] 2025-06-03 05:20:52,274 | INFO     | **************************************
[2025-06-03 14:21:11] 2025-06-03 05:20:52,776 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-06-03 14:21:11] 2025-06-03 05:20:52,783 | INFO     | sufficient remaining disk space (129114308608 B)
[2025-06-03 14:21:11] 2025-06-03 05:20:52,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 14:21:11] 2025-06-03 05:20:52,784 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 14:21:11] 2025-06-03 05:20:52,784 | INFO     | update_server=False
[2025-06-03 14:21:11] 2025-06-03 05:20:52,784 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 14:21:11] 2025-06-03 05:20:52,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:21:11] 2025-06-03 05:20:52,784 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 14:21:11] 2025-06-03 05:20:52,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 14:21:11] 2025-06-03 05:20:53,044 | INFO     | all data control threads have been joined
[2025-06-03 14:21:11] 2025-06-03 05:20:53,262 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 14:21:11] 2025-06-03 05:20:53,262 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 14:21:11] 2025-06-03 05:20:53,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:21:11] 2025-06-03 05:20:53,262 | INFO     | will abort loop
[2025-06-03 14:21:11] 2025-06-03 05:20:53,310 | INFO     | PID=3327518 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 14:21:11] 2025-06-03 05:20:53,310 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 14:21:11] 2025-06-03 05:20:53,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 14:21:11] 2025-06-03 05:20:53,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 14:21:11] 2025-06-03 05:20:53,788 | INFO     | [job] retrieve thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:53,789 | INFO     | [job] queue monitor thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:53,959 | INFO     | all payload control threads have been joined
[2025-06-03 14:21:11] 2025-06-03 05:20:53,991 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:53,992 | INFO     | all job control threads have been joined
[2025-06-03 14:21:11] 2025-06-03 05:20:54,045 | INFO     | [data] control thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,253 | INFO     | [job] validate thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,267 | INFO     | [job] job monitor thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,271 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,688 | INFO     | [data] copytool_in thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,790 | INFO     | [data] copytool_out thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,790 | INFO     | [payload] validate_post thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,964 | INFO     | [payload] control thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,988 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:54,997 | INFO     | [job] control thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:55,055 | INFO     | [payload] failed_post thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:20:56,789 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:21:02,968 | INFO     | job.realtimelogging is not enabled
[2025-06-03 14:21:11] 2025-06-03 05:21:03,973 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 14:21:11] 2025-06-03 05:21:06,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064733738816)>', '<ExcThread(monitor, started 140063505639168)>']
[2025-06-03 14:21:11] 2025-06-03 05:21:06,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 14:21:11] 2025-06-03 05:21:06,375 | INFO     | [monitor] control thread has ended
[2025-06-03 14:21:11] 2025-06-03 05:21:11,044 | INFO     | all workflow threads have been joined
[2025-06-03 14:21:11] 2025-06-03 05:21:11,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 14:21:11] 2025-06-03 05:21:11,044 | INFO     | traces error code: 0
[2025-06-03 14:21:11] 2025-06-03 05:21:11,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 14:21:11] 2025-06-03 05:21:11,103 [wrapper] ==== pilot stdout END ====
[2025-06-03 14:21:11] 2025-06-03 05:21:11,105 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 14:21:11] 2025-06-03 05:21:11,107 [wrapper] pilotpid: 3327518
[2025-06-03 14:21:11] 2025-06-03 05:21:11,108 [wrapper] Pilot exit status: 0
[2025-06-03 14:21:11] 2025-06-03 05:21:11,114 [wrapper] pandaids: 6677387724
[2025-06-03 14:21:11] 2025-06-03 05:21:11,125 [wrapper] cleanup supervisor_pilot 3347612 3327519
[2025-06-03 14:21:11] 2025-06-03 05:21:11,127 [wrapper] Test setup, not cleaning
[2025-06-03 14:21:11] 2025-06-03 05:21:11,128 [wrapper] apfmon messages muted
[2025-06-03 14:21:11] 2025-06-03 05:21:11,130 [wrapper] ==== wrapper stdout END ====
[2025-06-03 14:21:11] 2025-06-03 05:21:11,131 [wrapper] ==== wrapper stderr END ====
[2025-06-03 14:21:11]  *** Error codes and diagnostics ***
[2025-06-03 14:21:11]     "exeErrorCode": 0,
[2025-06-03 14:21:11]     "exeErrorDiag": "",
[2025-06-03 14:21:11]     "pilotErrorCode": 0,
[2025-06-03 14:21:11]     "pilotErrorDiag": "",
[2025-06-03 14:21:11]  *** Listing of results directory ***
[2025-06-03 14:21:11] total 382352
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc    495897 Jun  3 02:25 pilot3.tar.gz
[2025-06-03 14:21:11] -rwx------. 1 boinc boinc     37140 Jun  3 02:34 runpilot2-wrapper.sh
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc      5111 Jun  3 02:34 queuedata.json
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc       100 Jun  3 12:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 14:21:11] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 12:28 run_atlas
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc       105 Jun  3 12:28 job.xml
[2025-06-03 14:21:11] -rw-r--r--. 2 boinc boinc    508876 Jun  3 12:28 input.tar.gz
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc      9292 Jun  3 12:28 init_data.xml
[2025-06-03 14:21:11] -rw-r--r--. 2 boinc boinc 213548318 Jun  3 12:28 EVNT.45006593._000228.pool.root.1
[2025-06-03 14:21:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:28 start_atlas.sh
[2025-06-03 14:21:11] drwxrwx--x. 2 boinc boinc        68 Jun  3 12:28 shared
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc         0 Jun  3 12:28 boinc_lockfile
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc      2521 Jun  3 12:28 pandaJob.out
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc    988073 Jun  3 12:28 agis_schedconf.cvmfs.json
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc   1603667 Jun  3 12:28 agis_ddmendpoints.agis.ALL.json
[2025-06-03 14:21:11] drwx------. 4 boinc boinc      4096 Jun  3 12:28 pilot3
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc 172469356 Jun  3 14:19 HITS.45006595._005685.pool.root.1
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc      1029 Jun  3 14:19 memory_monitor_summary.json
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc    237157 Jun  3 14:19 log.45006595._005685.job.log.tgz.1
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc       529 Jun  3 14:19 boinc_task_state.xml
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc        96 Jun  3 14:20 pilot_heartbeat.json
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc      7661 Jun  3 14:20 heartbeat.json
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc      8192 Jun  3 14:20 boinc_mmap_file
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc        27 Jun  3 14:20 wrapper_checkpoint.txt
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc      4931 Jun  3 14:21 pilotlog.txt
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc    607281 Jun  3 14:21 log.45006595._005685.job.log.1
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc       357 Jun  3 14:21 output.list
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc       620 Jun  3 14:21 runtime_log
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc    860160 Jun  3 14:21 result.tar.gz
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc      8617 Jun  3 14:21 runtime_log.err
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc       642 Jun  3 14:21 HNWNDmhEOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1mfKDm5bOc0m.diag
[2025-06-03 14:21:11] -rw-r--r--. 1 boinc boinc     20634 Jun  3 14:21 stderr.txt
[2025-06-03 14:21:11] HITS file was successfully produced:
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc 172469356 Jun  3 14:19 shared/HITS.pool.root.1
[2025-06-03 14:21:11]  *** Contents of shared directory: ***
[2025-06-03 14:21:11] total 378328
[2025-06-03 14:21:11] -rw-r--r--. 2 boinc boinc    508876 Jun  3 12:28 input.tar.gz
[2025-06-03 14:21:11] -rw-r--r--. 2 boinc boinc 213548318 Jun  3 12:28 ATLAS.root_0
[2025-06-03 14:21:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:28 start_atlas.sh
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc 172469356 Jun  3 14:19 HITS.pool.root.1
[2025-06-03 14:21:11] -rw-------. 1 boinc boinc    860160 Jun  3 14:21 result.tar.gz
14:21:12 (3323934): run_atlas exited; CPU time 16350.356060
14:21:12 (3323934): called boinc_finish(0)

</stderr_txt>
]]>

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