Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:44:36 (31257): wrapper (7.7.26015): starting
03:44:36 (31257): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 03:44:36] Arguments: --nthreads 8
[2025-06-03 03:44:36] Threads: 8
[2025-06-03 03:44:36] Checking for CVMFS
[2025-06-03 03:44:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:44:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 03:44:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 03:44:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 03:44:38] 2.11.2.0 26121 31124 90376 146723 1 155 18213321 25165825 4353 130560 0 15040673 99.794 18150921 2031 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 03:44:38] CVMFS is ok
[2025-06-03 03:44:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 03:44:38] Checking for apptainer binary...
[2025-06-03 03:44:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 03:44:38] Running /usr/bin/apptainer --version
[2025-06-03 03:44:38] apptainer version 1.3.2-1.el7
[2025-06-03 03:44:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 03:44:39] cg-vwn308.simple-grid.lan
[2025-06-03 03:44:39] apptainer works
[2025-06-03 03:44:39] Set ATHENA_PROC_NUMBER=8
[2025-06-03 03:44:39] Set ATHENA_CORE_NUMBER=8
[2025-06-03 03:44:39] Starting ATLAS job with PandaID=6677387527
[2025-06-03 03:44:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 08:02:14]  *** The last 200 lines of the pilot log: ***
[2025-06-03 08:02:14] 2025-06-03 05:30:45,734 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6677387527/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 08:02:14] 2025-06-03 05:30:45,735 | INFO     | extracted standard info from prmon json
[2025-06-03 08:02:14] 2025-06-03 05:30:45,735 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 08:02:14] 2025-06-03 05:30:45,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 08:02:14] 2025-06-03 05:30:45,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 08:02:14] 2025-06-03 05:30:45,736 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 08:02:14] 2025-06-03 05:30:45,740 | INFO     | fitting pss+swap vs Time
[2025-06-03 08:02:14] 2025-06-03 05:30:45,741 | INFO     | sum of square deviations: 3301699115.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,743 | INFO     | sum of deviations: -2611504977.000004
[2025-06-03 08:02:14] 2025-06-03 05:30:45,743 | INFO     | mean x: 1748921840.5
[2025-06-03 08:02:14] 2025-06-03 05:30:45,743 | INFO     | mean y: 2484691.9727272727
[2025-06-03 08:02:14] 2025-06-03 05:30:45,743 | INFO     | -- intersect: 1385808226.8460002
[2025-06-03 08:02:14] 2025-06-03 05:30:45,743 | INFO     | intersect: 1385808226.8460002
[2025-06-03 08:02:14] 2025-06-03 05:30:45,744 | INFO     | chi2: 2.59650744841241
[2025-06-03 08:02:14] 2025-06-03 05:30:45,744 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,746 | INFO     | sum of deviations: 11839761572.000004
[2025-06-03 08:02:14] 2025-06-03 05:30:45,746 | INFO     | mean x: 1748921688.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,746 | INFO     | mean y: 2494521.906976744
[2025-06-03 08:02:14] 2025-06-03 05:30:45,746 | INFO     | -- intersect: -6716880980.592778
[2025-06-03 08:02:14] 2025-06-03 05:30:45,746 | INFO     | intersect: -6716880980.592778
[2025-06-03 08:02:14] 2025-06-03 05:30:45,746 | INFO     | chi2: 1.8316842345363302
[2025-06-03 08:02:14] 2025-06-03 05:30:45,747 | INFO     | current chi2=1.8316842345363302 (change=29.455845171702393 %)
[2025-06-03 08:02:14] 2025-06-03 05:30:45,747 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 08:02:14] 2025-06-03 05:30:45,755 | INFO     | sum of deviations: 11513066586.499998
[2025-06-03 08:02:14] 2025-06-03 05:30:45,755 | INFO     | mean x: 1748921535.5
[2025-06-03 08:02:14] 2025-06-03 05:30:45,755 | INFO     | mean y: 2494284.785714286
[2025-06-03 08:02:14] 2025-06-03 05:30:45,755 | INFO     | -- intersect: -7009392282.832334
[2025-06-03 08:02:14] 2025-06-03 05:30:45,756 | INFO     | intersect: -7009392282.832334
[2025-06-03 08:02:14] 2025-06-03 05:30:45,756 | INFO     | chi2: 1.8325010591341822
[2025-06-03 08:02:14] 2025-06-03 05:30:45,756 | INFO     | current chi2=1.8325010591341822 (change=-0.04459418181642526 %)
[2025-06-03 08:02:14] 2025-06-03 05:30:45,756 | INFO     | right removable region: 209
[2025-06-03 08:02:14] 2025-06-03 05:30:45,757 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,758 | INFO     | sum of deviations: -40958466348.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,758 | INFO     | mean x: 1748921993.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,759 | INFO     | mean y: 2511040.1395348837
[2025-06-03 08:02:14] 2025-06-03 05:30:45,759 | INFO     | -- intersect: 23247519963.735065
[2025-06-03 08:02:14] 2025-06-03 05:30:45,759 | INFO     | intersect: 23247519963.735065
[2025-06-03 08:02:14] 2025-06-03 05:30:45,759 | INFO     | chi2: 0.9483852905955384
[2025-06-03 08:02:14] 2025-06-03 05:30:45,759 | INFO     | current chi2=0.9483852905955384 (change=63.47457846980519 %)
[2025-06-03 08:02:14] 2025-06-03 05:30:45,760 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 08:02:14] 2025-06-03 05:30:45,761 | INFO     | sum of deviations: -38492291492.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,761 | INFO     | mean x: 1748922145.5
[2025-06-03 08:02:14] 2025-06-03 05:30:45,761 | INFO     | mean y: 2509209.7714285715
[2025-06-03 08:02:14] 2025-06-03 05:30:45,762 | INFO     | -- intersect: 23445757260.18821
[2025-06-03 08:02:14] 2025-06-03 05:30:45,762 | INFO     | intersect: 23445757260.18821
[2025-06-03 08:02:14] 2025-06-03 05:30:45,762 | INFO     | chi2: 0.933381309866297
[2025-06-03 08:02:14] 2025-06-03 05:30:45,762 | INFO     | current chi2=0.933381309866297 (change=1.5820554028015053 %)
[2025-06-03 08:02:14] 2025-06-03 05:30:45,762 | INFO     | left removable region: 20
[2025-06-03 08:02:14] 2025-06-03 05:30:45,763 | INFO     | sum of square deviations: 2093397390.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,764 | INFO     | sum of deviations: -9488443310.999998
[2025-06-03 08:02:14] 2025-06-03 05:30:45,764 | INFO     | mean x: 1748922115.0
[2025-06-03 08:02:14] 2025-06-03 05:30:45,764 | INFO     | mean y: 2508525.5502645504
[2025-06-03 08:02:14] 2025-06-03 05:30:45,764 | INFO     | -- intersect: 7929597965.330123
[2025-06-03 08:02:14] 2025-06-03 05:30:45,764 | INFO     | intersect: 7929597965.330123
[2025-06-03 08:02:14] 2025-06-03 05:30:45,765 | INFO     | chi2: 0.08736128203411805
[2025-06-03 08:02:14] 2025-06-03 05:30:45,765 | INFO     | -- intersect: 7929597965.330123
[2025-06-03 08:02:14] 2025-06-03 05:30:45,765 | INFO     | current memory leak: -4.53 B/s (using 189 data points, chi2=0.09)
[2025-06-03 08:02:14] 2025-06-03 05:30:45,766 | INFO     | ..............................
[2025-06-03 08:02:14] 2025-06-03 05:30:45,766 | INFO     | . Timing measurements:
[2025-06-03 08:02:14] 2025-06-03 05:30:45,766 | INFO     | . get job = 0 s
[2025-06-03 08:02:14] 2025-06-03 05:30:45,766 | INFO     | . initial setup = 2 s
[2025-06-03 08:02:14] 2025-06-03 05:30:45,766 | INFO     | . payload setup = 14 s
[2025-06-03 08:02:14] 2025-06-03 05:30:45,766 | INFO     | . stage-in = 0 s
[2025-06-03 08:02:14] 2025-06-03 05:30:45,766 | INFO     | . payload execution = 13402 s
[2025-06-03 08:02:14] 2025-06-03 05:30:45,767 | INFO     | . stage-out = 3 s
[2025-06-03 08:02:14] 2025-06-03 05:30:45,767 | INFO     | . log creation = 1 s
[2025-06-03 08:02:14] 2025-06-03 05:30:45,767 | INFO     | ..............................
[2025-06-03 08:02:14] 2025-06-03 05:30:46,273 | INFO     | 
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | job summary report
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | --------------------------------------------------
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | PanDA job id: 6677387527
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | task id: 45006595
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | errors: (none)
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | pilot state: finished 
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | transexitcode: 0
[2025-06-03 08:02:14] 2025-06-03 05:30:46,274 | INFO     | exeerrorcode: 0
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | exeerrordiag: 
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | exitcode: 0
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | exitmsg: OK
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | cpuconsumptiontime: 50925 s
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | nevents: 400
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | neventsw: 0
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | pid: 11506
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | pgrp: 11506
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | corecount: 8
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | event service: False
[2025-06-03 08:02:14] 2025-06-03 05:30:46,275 | INFO     | sizes: {0: 2404349, 1: 2405205, 2: 2405205, 12: 2405467, 13420: 2435035, 13425: 2443976, 13426: 2444160, 13523: 2444330}
[2025-06-03 08:02:14] 2025-06-03 05:30:46,276 | INFO     | --------------------------------------------------
[2025-06-03 08:02:14] 2025-06-03 05:30:46,276 | INFO     | 
[2025-06-03 08:02:14] 2025-06-03 05:30:46,276 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-03 08:02:14] 2025-06-03 05:30:46,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,843 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 08:02:14] 2025-06-03 05:30:46,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,846 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 08:02:14] 2025-06-03 05:30:46,846 | INFO     | job 6677387527 has completed (purged errors)
[2025-06-03 08:02:14] 2025-06-03 05:30:46,846 | INFO     | overall cleanup function is called
[2025-06-03 08:02:14] 2025-06-03 05:30:47,854 | INFO     | --- collectZombieJob: --- 10, [11506]
[2025-06-03 08:02:14] 2025-06-03 05:30:47,855 | INFO     | zombie collector waiting for pid 11506
[2025-06-03 08:02:14] 2025-06-03 05:30:47,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 08:02:14] 2025-06-03 05:30:47,855 | INFO     | collected zombie processes
[2025-06-03 08:02:14] 2025-06-03 05:30:47,855 | INFO     | will attempt to kill all subprocesses of pid=11506
[2025-06-03 08:02:14] 2025-06-03 05:30:47,990 | INFO     | process IDs to be killed: [11506] (in reverse order)
[2025-06-03 08:02:14] 2025-06-03 05:30:48,708 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 08:02:14] 2025-06-03 05:30:48,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 08:02:14] 2025-06-03 05:30:48,712 | INFO     | did not find any defunct processes belonging to 11506
[2025-06-03 08:02:14] 2025-06-03 05:30:48,715 | INFO     | did not find any defunct processes belonging to 11506
[2025-06-03 08:02:14] 2025-06-03 05:30:48,715 | INFO     | ready for new job
[2025-06-03 08:02:14] 2025-06-03 05:30:48,715 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 08:02:14] 2025-06-03 05:30:48,717 | INFO     | **************************************
[2025-06-03 08:02:14] 2025-06-03 05:30:48,718 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 08:02:14] 2025-06-03 05:30:48,718 | INFO     | **************************************
[2025-06-03 08:02:14] 2025-06-03 05:30:48,718 | INFO     | 
[2025-06-03 08:02:14] 2025-06-03 05:30:48,718 | INFO     | pilot is running in a VM
[2025-06-03 08:02:14] 2025-06-03 05:30:48,719 | INFO     | architecture information:
[2025-06-03 08:02:14] 2025-06-03 05:30:48,723 | INFO     | executing command: cat /etc/os-release
[2025-06-03 08:02:14] 2025-06-03 05:30:48,882 | INFO     | cat /etc/os-release:
[2025-06-03 08:02:14] NAME="CentOS Linux"
[2025-06-03 08:02:14] VERSION="7 (Core)"
[2025-06-03 08:02:14] ID="centos"
[2025-06-03 08:02:14] ID_LIKE="rhel fedora"
[2025-06-03 08:02:14] VERSION_ID="7"
[2025-06-03 08:02:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 08:02:14] ANSI_COLOR="0;31"
[2025-06-03 08:02:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 08:02:14] HOME_URL="https://www.centos.org/"
[2025-06-03 08:02:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 08:02:14] 
[2025-06-03 08:02:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 08:02:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 08:02:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 08:02:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 08:02:14] 
[2025-06-03 08:02:14] 2025-06-03 05:30:48,883 | INFO     | **************************************
[2025-06-03 08:02:14] 2025-06-03 05:30:49,386 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-03 08:02:14] 2025-06-03 05:30:49,548 | INFO     | sufficient remaining disk space (496976789504 B)
[2025-06-03 08:02:14] 2025-06-03 05:30:49,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 08:02:14] 2025-06-03 05:30:49,549 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 08:02:14] 2025-06-03 05:30:49,549 | INFO     | update_server=False
[2025-06-03 08:02:14] 2025-06-03 05:30:49,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 08:02:14] 2025-06-03 05:30:49,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 08:02:14] 2025-06-03 05:30:49,745 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:02:14] 2025-06-03 05:30:49,746 | INFO     | aborting loop
[2025-06-03 08:02:14] 2025-06-03 05:30:49,971 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 08:02:14] 2025-06-03 05:30:49,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 08:02:14] 2025-06-03 05:30:49,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 08:02:14] 2025-06-03 05:30:50,134 | INFO     | all data control threads have been joined
[2025-06-03 08:02:14] 2025-06-03 05:30:50,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 08:02:14] 2025-06-03 05:30:50,556 | INFO     | [job] retrieve thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:50,692 | INFO     | all payload control threads have been joined
[2025-06-03 08:02:14] 2025-06-03 05:30:50,752 | INFO     | [job] job monitor thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:50,759 | INFO     | all job control threads have been joined
[2025-06-03 08:02:14] 2025-06-03 05:30:50,928 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:50,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:02:14] 2025-06-03 05:30:51,087 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,140 | INFO     | [data] control thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,244 | INFO     | [data] copytool_in thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,452 | INFO     | [job] validate thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,556 | INFO     | [data] copytool_out thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,663 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,698 | INFO     | [payload] control thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,765 | INFO     | [job] control thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,885 | INFO     | [payload] failed_post thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,968 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,979 | INFO     | [job] queue monitor thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:51,997 | INFO     | [payload] validate_post thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:54,222 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 08:02:14] 2025-06-03 05:30:55,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140029651720000)>', '<ExcThread(monitor, started 140029070399232)>']
[2025-06-03 08:02:14] 2025-06-03 05:30:56,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 08:02:14] 2025-06-03 05:30:56,005 | INFO     | [monitor] control thread has ended
[2025-06-03 08:02:14] 2025-06-03 05:31:00,660 | INFO     | all workflow threads have been joined
[2025-06-03 08:02:14] 2025-06-03 05:31:00,661 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 08:02:14] 2025-06-03 05:31:00,661 | INFO     | traces error code: 0
[2025-06-03 08:02:14] 2025-06-03 05:31:00,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 08:02:14] 2025-06-03 05:31:00,890 [wrapper] ==== pilot stdout END ====
[2025-06-03 08:02:14] 2025-06-03 05:31:00,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 08:02:14] 2025-06-03 05:31:00,897 [wrapper] pilotpid: 2922
[2025-06-03 08:02:14] 2025-06-03 05:31:00,906 [wrapper] Pilot exit status: 0
[2025-06-03 08:02:14] 2025-06-03 05:31:00,929 [wrapper] pandaids: 6677387527
[2025-06-03 08:02:14] 2025-06-03 05:31:00,974 [wrapper] cleanup supervisor_pilot 12899 2923
[2025-06-03 08:02:14] 2025-06-03 05:31:01,069 [wrapper] Test setup, not cleaning
[2025-06-03 08:02:14] 2025-06-03 05:31:01,171 [wrapper] apfmon messages muted
[2025-06-03 08:02:14] 2025-06-03 05:31:01,259 [wrapper] ==== wrapper stdout END ====
[2025-06-03 08:02:14] 2025-06-03 05:31:01,407 [wrapper] ==== wrapper stderr END ====
[2025-06-03 08:02:14]  *** Error codes and diagnostics ***
[2025-06-03 08:02:14]     "exeErrorCode": 0,
[2025-06-03 08:02:14]     "exeErrorDiag": "",
[2025-06-03 08:02:14]     "pilotErrorCode": 0,
[2025-06-03 08:02:14]     "pilotErrorDiag": "",
[2025-06-03 08:02:14]  *** Listing of results directory ***
[2025-06-03 08:02:14] total 396484
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:25 pilot3.tar.gz
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:29 queuedata.json
[2025-06-03 08:02:14] -rwx------. 1 boinc boinc     37140 Jun  2 19:29 runpilot2-wrapper.sh
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc       100 Jun  3 03:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 08:02:14] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 03:44 run_atlas
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc       105 Jun  3 03:44 job.xml
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc      6391 Jun  3 03:44 init_data.xml
[2025-06-03 08:02:14] -rw-r--r--. 2 boinc boinc 214854431 Jun  3 03:44 EVNT.45006593._000222.pool.root.1
[2025-06-03 08:02:14] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:44 start_atlas.sh
[2025-06-03 08:02:14] drwxrwx--x. 2 boinc boinc        68 Jun  3 03:44 shared
[2025-06-03 08:02:14] -rw-r--r--. 2 boinc boinc    508875 Jun  3 03:44 input.tar.gz
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc         0 Jun  3 03:44 boinc_lockfile
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc      2521 Jun  3 03:44 pandaJob.out
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc    988081 Jun  3 03:45 agis_schedconf.cvmfs.json
[2025-06-03 08:02:14] drwx------. 4 boinc boinc      4096 Jun  3 03:45 pilot3
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc 184228845 Jun  3 07:27 HITS.45006595._005534.pool.root.1
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc       531 Jun  3 07:28 boinc_task_state.xml
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc      1018 Jun  3 07:28 memory_monitor_summary.json
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc   1603667 Jun  3 07:29 agis_ddmendpoints.agis.ALL.json
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc    372441 Jun  3 07:29 log.45006595._005534.job.log.tgz.1
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc        95 Jun  3 07:29 pilot_heartbeat.json
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc      7681 Jun  3 07:30 heartbeat.json
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc      4416 Jun  3 07:31 pilotlog.txt
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc   1170142 Jun  3 07:31 log.45006595._005534.job.log.1
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc       357 Jun  3 07:31 output.list
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc       620 Jun  3 07:31 runtime_log
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc   1566720 Jun  3 07:31 result.tar.gz
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc      8659 Jun  3 07:31 runtime_log.err
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc       656 Jun  3 07:31 DjTLDmd9Ng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbkfKDm1AzGHn.diag
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc      8192 Jun  3 08:02 boinc_mmap_file
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc        28 Jun  3 08:02 wrapper_checkpoint.txt
[2025-06-03 08:02:14] -rw-r--r--. 1 boinc boinc     20487 Jun  3 08:02 stderr.txt
[2025-06-03 08:02:14] HITS file was successfully produced:
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc 184228845 Jun  3 07:27 shared/HITS.pool.root.1
[2025-06-03 08:02:14]  *** Contents of shared directory: ***
[2025-06-03 08:02:14] total 391780
[2025-06-03 08:02:14] -rw-r--r--. 2 boinc boinc 214854431 Jun  3 03:44 ATLAS.root_0
[2025-06-03 08:02:14] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:44 start_atlas.sh
[2025-06-03 08:02:14] -rw-r--r--. 2 boinc boinc    508875 Jun  3 03:44 input.tar.gz
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc 184228845 Jun  3 07:27 HITS.pool.root.1
[2025-06-03 08:02:14] -rw-------. 1 boinc boinc   1566720 Jun  3 07:31 result.tar.gz
08:02:16 (31257): run_atlas exited; CPU time 51094.690299
08:02:16 (31257): called boinc_finish(0)

</stderr_txt>
]]>

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