Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:46:31 (3245429): wrapper (7.7.26015): starting
06:46:31 (3245429): wrapper: running run_atlas (--nthreads 3)
[2025-06-03 06:46:31] Arguments: --nthreads 3
[2025-06-03 06:46:31] Threads: 3
[2025-06-03 06:46:31] Checking for CVMFS
[2025-06-03 06:46:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:46:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:46:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:46:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:46:32] 2.11.5.0 3218729 110 53036 146718 1 56 23254739 31457281 0 130560 0 71697 99.977 71432 230 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-03 06:46:32] CVMFS is ok
[2025-06-03 06:46:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:46:32] Checking for apptainer binary...
[2025-06-03 06:46:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:46:32] Running /usr/bin/apptainer --version
[2025-06-03 06:46:32] apptainer version 1.3.4-1.el9
[2025-06-03 06:46:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:46:32] testio001
[2025-06-03 06:46:32] apptainer works
[2025-06-03 06:46:32] Set ATHENA_PROC_NUMBER=3
[2025-06-03 06:46:32] Set ATHENA_CORE_NUMBER=3
[2025-06-03 06:46:32] Starting ATLAS job with PandaID=6677387710
[2025-06-03 06:46:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 08:40:23]  *** The last 200 lines of the pilot log: ***
[2025-06-03 08:40:23] 2025-06-02 23:40:11,176 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 08:40:23] 2025-06-02 23:40:11,176 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6677387710/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,176 | INFO     | extracted standard info from prmon json
[2025-06-03 08:40:23] 2025-06-02 23:40:11,176 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 08:40:23] 2025-06-02 23:40:11,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 08:40:23] 2025-06-02 23:40:11,177 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 08:40:23] 2025-06-02 23:40:11,177 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | fitting pss+swap vs Time
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | sum of square deviations: 412686579.3545449
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | sum of deviations: 11100836454.27273
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | mean x: 1748904146.5363636
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | mean y: 2391721.1818181816
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | -- intersect: -47041296821.499146
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | intersect: -47041296821.499146
[2025-06-03 08:40:23] 2025-06-02 23:40:11,178 | INFO     | chi2: 3.840544890878171
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | sum of square deviations: 358928651.8476197
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | sum of deviations: 12043160586.27619
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | mean x: 1748903994.0380952
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | mean y: 2394396.180952381
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | -- intersect: -58678715461.61452
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | intersect: -58678715461.61452
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | chi2: 3.8445833963026343
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | current chi2=3.8445833963026343 (change=-0.10515449081340436 %)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | right removable region: 104
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | sum of square deviations: 358926211.8476197
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | sum of deviations: -12412212736.657139
[2025-06-03 08:40:23] 2025-06-02 23:40:11,179 | INFO     | mean x: 1748904299.0380952
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | mean y: 2458009.9142857143
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | -- intersect: 60482220978.38479
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | intersect: 60482220978.38479
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | chi2: 1.4307010271172322
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | current chi2=1.4307010271172322 (change=62.74744683976103 %)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | sum of square deviations: 310049656.84000015
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | sum of deviations: -28673050602.90001
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | mean x: 1748904451.54
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | mean y: 2508762.85
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | -- intersect: 161739265222.22375
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | intersect: 161739265222.22375
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | chi2: 0.24155472790542565
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | current chi2=0.24155472790542565 (change=83.11633784228543 %)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,180 | INFO     | sum of square deviations: 265824351.8315792
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | sum of deviations: -27570046603.768417
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | mean x: 1748904604.0421052
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | mean y: 2504717.442105263
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | -- intersect: 181390632278.96634
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | intersect: 181390632278.96634
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | chi2: 0.1867648949535046
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | current chi2=0.1867648949535046 (change=22.682161275424324 %)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | left removable region: 30
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | sum of square deviations: 125624178.28378361
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | sum of deviations: -15464071171.270273
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | mean x: 1748904878.554054
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | mean y: 2470425.5675675673
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | -- intersect: 215288969276.50455
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | intersect: 215288969276.50455
[2025-06-03 08:40:23] 2025-06-02 23:40:11,181 | INFO     | chi2: 0.1650542116310417
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | -- intersect: 215288969276.50455
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | current memory leak: -123.10 B/s (using 74 data points, chi2=0.17)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | ..............................
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . Timing measurements:
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . get job = 0 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . initial setup = 6 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . payload setup = 3 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . stage-in = 0 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . payload execution = 6712 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . stage-out = 0 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | . log creation = 0 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,182 | INFO     | ..............................
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | 
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | job summary report
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | --------------------------------------------------
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | PanDA job id: 6677387710
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | task id: 45006595
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | errors: (none)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | pilot state: finished 
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | transexitcode: 0
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | exeerrorcode: 0
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | exeerrordiag: 
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | exitcode: 0
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | exitmsg: OK
[2025-06-03 08:40:23] 2025-06-02 23:40:11,535 | INFO     | cpuconsumptiontime: 17132 s
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | nevents: 400
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | neventsw: 0
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | pid: 3255360
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | pgrp: 3255360
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | corecount: 3
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | event service: False
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | sizes: {0: 2405177, 3: 2405383, 11: 2405411, 6719: 2432370, 6720: 2441367, 6796: 2441481}
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | --------------------------------------------------
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | 
[2025-06-03 08:40:23] 2025-06-02 23:40:11,536 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-06-03 08:40:23] 2025-06-02 23:40:11,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,546 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,546 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,546 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | job 6677387710 has completed (purged errors)
[2025-06-03 08:40:23] 2025-06-02 23:40:11,547 | INFO     | overall cleanup function is called
[2025-06-03 08:40:23] 2025-06-02 23:40:12,553 | INFO     | --- collectZombieJob: --- 10, [3255360]
[2025-06-03 08:40:23] 2025-06-02 23:40:12,553 | INFO     | zombie collector waiting for pid 3255360
[2025-06-03 08:40:23] 2025-06-02 23:40:12,553 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 08:40:23] 2025-06-02 23:40:12,553 | INFO     | collected zombie processes
[2025-06-03 08:40:23] 2025-06-02 23:40:12,553 | INFO     | will attempt to kill all subprocesses of pid=3255360
[2025-06-03 08:40:23] 2025-06-02 23:40:12,585 | INFO     | process IDs to be killed: [3255360] (in reverse order)
[2025-06-03 08:40:23] 2025-06-02 23:40:12,603 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 08:40:23] 2025-06-02 23:40:12,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 08:40:23] 2025-06-02 23:40:12,604 | INFO     | did not find any defunct processes belonging to 3255360
[2025-06-03 08:40:23] 2025-06-02 23:40:12,605 | INFO     | did not find any defunct processes belonging to 3255360
[2025-06-03 08:40:23] 2025-06-02 23:40:12,605 | INFO     | ready for new job
[2025-06-03 08:40:23] 2025-06-02 23:40:12,605 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 08:40:23] 2025-06-02 23:40:12,606 | INFO     | **************************************
[2025-06-03 08:40:23] 2025-06-02 23:40:12,606 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 08:40:23] 2025-06-02 23:40:12,606 | INFO     | **************************************
[2025-06-03 08:40:23] 2025-06-02 23:40:12,606 | INFO     | 
[2025-06-03 08:40:23] 2025-06-02 23:40:12,618 | INFO     | architecture information:
[2025-06-03 08:40:23] 2025-06-02 23:40:12,618 | INFO     | executing command: cat /etc/os-release
[2025-06-03 08:40:23] 2025-06-02 23:40:12,627 | INFO     | cat /etc/os-release:
[2025-06-03 08:40:23] NAME="CentOS Linux"
[2025-06-03 08:40:23] VERSION="7 (Core)"
[2025-06-03 08:40:23] ID="centos"
[2025-06-03 08:40:23] ID_LIKE="rhel fedora"
[2025-06-03 08:40:23] VERSION_ID="7"
[2025-06-03 08:40:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 08:40:23] ANSI_COLOR="0;31"
[2025-06-03 08:40:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 08:40:23] HOME_URL="https://www.centos.org/"
[2025-06-03 08:40:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 08:40:23] 
[2025-06-03 08:40:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 08:40:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 08:40:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 08:40:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 08:40:23] 
[2025-06-03 08:40:23] 2025-06-02 23:40:12,627 | INFO     | **************************************
[2025-06-03 08:40:23] 2025-06-02 23:40:13,129 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-06-03 08:40:23] 2025-06-02 23:40:13,136 | INFO     | sufficient remaining disk space (128549126144 B)
[2025-06-03 08:40:23] 2025-06-02 23:40:13,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 08:40:23] 2025-06-02 23:40:13,137 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 08:40:23] 2025-06-02 23:40:13,137 | INFO     | update_server=False
[2025-06-03 08:40:23] 2025-06-02 23:40:13,137 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 08:40:23] 2025-06-02 23:40:13,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:40:23] 2025-06-02 23:40:13,137 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:40:23] 2025-06-02 23:40:13,137 | INFO     | aborting loop
[2025-06-03 08:40:23] 2025-06-02 23:40:13,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 08:40:23] 2025-06-02 23:40:13,486 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 08:40:23] 2025-06-02 23:40:13,486 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 08:40:23] 2025-06-02 23:40:13,486 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 08:40:23] 2025-06-02 23:40:13,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 08:40:23] 2025-06-02 23:40:13,740 | INFO     | all payload control threads have been joined
[2025-06-03 08:40:23] 2025-06-02 23:40:14,141 | INFO     | [job] retrieve thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,142 | INFO     | [job] job monitor thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,142 | INFO     | [job] queue monitor thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,195 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,206 | INFO     | [job] validate thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,216 | INFO     | all data control threads have been joined
[2025-06-03 08:40:23] 2025-06-02 23:40:14,239 | INFO     | [payload] validate_post thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,444 | INFO     | [data] copytool_in thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,450 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:14,557 | INFO     | all job control threads have been joined
[2025-06-03 08:40:23] 2025-06-02 23:40:14,745 | INFO     | [payload] control thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:15,159 | INFO     | [data] copytool_out thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:15,221 | INFO     | [data] control thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:15,273 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:15,304 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:15,562 | INFO     | [job] control thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:15,660 | INFO     | [payload] failed_post thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:17,631 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 08:40:23] 2025-06-02 23:40:18,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278032570176)>', '<ExcThread(monitor, started 140277675169536)>']
[2025-06-03 08:40:23] 2025-06-02 23:40:19,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 08:40:23] 2025-06-02 23:40:19,516 | INFO     | [monitor] control thread has ended
[2025-06-03 08:40:23] 2025-06-02 23:40:23,632 | INFO     | all workflow threads have been joined
[2025-06-03 08:40:23] 2025-06-02 23:40:23,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 08:40:23] 2025-06-02 23:40:23,632 | INFO     | traces error code: 0
[2025-06-03 08:40:23] 2025-06-02 23:40:23,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 08:40:23] 2025-06-02 23:40:23,691 [wrapper] ==== pilot stdout END ====
[2025-06-03 08:40:23] 2025-06-02 23:40:23,693 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 08:40:23] 2025-06-02 23:40:23,694 [wrapper] pilotpid: 3249016
[2025-06-03 08:40:23] 2025-06-02 23:40:23,696 [wrapper] Pilot exit status: 0
[2025-06-03 08:40:23] 2025-06-02 23:40:23,702 [wrapper] pandaids: 6677387710
[2025-06-03 08:40:23] 2025-06-02 23:40:23,714 [wrapper] cleanup supervisor_pilot 3269147 3249017
[2025-06-03 08:40:23] 2025-06-02 23:40:23,715 [wrapper] Test setup, not cleaning
[2025-06-03 08:40:23] 2025-06-02 23:40:23,716 [wrapper] apfmon messages muted
[2025-06-03 08:40:23] 2025-06-02 23:40:23,718 [wrapper] ==== wrapper stdout END ====
[2025-06-03 08:40:23] 2025-06-02 23:40:23,719 [wrapper] ==== wrapper stderr END ====
[2025-06-03 08:40:23]  *** Error codes and diagnostics ***
[2025-06-03 08:40:23]     "exeErrorCode": 0,
[2025-06-03 08:40:23]     "exeErrorDiag": "",
[2025-06-03 08:40:23]     "pilotErrorCode": 0,
[2025-06-03 08:40:23]     "pilotErrorDiag": "",
[2025-06-03 08:40:23]  *** Listing of results directory ***
[2025-06-03 08:40:23] total 388824
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc    495897 Jun  3 02:25 pilot3.tar.gz
[2025-06-03 08:40:23] -rwx------. 1 boinc boinc     37140 Jun  3 02:34 runpilot2-wrapper.sh
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc      5111 Jun  3 02:34 queuedata.json
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 08:40:23] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:46 run_atlas
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:46 job.xml
[2025-06-03 08:40:23] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:46 start_atlas.sh
[2025-06-03 08:40:23] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:46 shared
[2025-06-03 08:40:23] -rw-r--r--. 2 boinc boinc    508875 Jun  3 06:46 input.tar.gz
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc      9292 Jun  3 06:46 init_data.xml
[2025-06-03 08:40:23] -rw-r--r--. 2 boinc boinc 213719802 Jun  3 06:46 EVNT.45006593._000227.pool.root.1
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:46 boinc_lockfile
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc      2521 Jun  3 06:46 pandaJob.out
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc    987975 Jun  3 06:46 agis_schedconf.cvmfs.json
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc   1603667 Jun  3 06:46 agis_ddmendpoints.agis.ALL.json
[2025-06-03 08:40:23] drwx------. 4 boinc boinc      4096 Jun  3 06:46 pilot3
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc 178862512 Jun  3 08:38 HITS.45006595._005671.pool.root.1
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc       529 Jun  3 08:38 boinc_task_state.xml
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc      1015 Jun  3 08:38 memory_monitor_summary.json
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc    251857 Jun  3 08:38 log.45006595._005671.job.log.tgz.1
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc        95 Jun  3 08:39 pilot_heartbeat.json
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc        27 Jun  3 08:40 wrapper_checkpoint.txt
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc      8192 Jun  3 08:40 boinc_mmap_file
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc      7669 Jun  3 08:40 heartbeat.json
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc      4354 Jun  3 08:40 pilotlog.txt
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc    619335 Jun  3 08:40 log.45006595._005671.job.log.1
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc       357 Jun  3 08:40 output.list
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc       620 Jun  3 08:40 runtime_log
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc    890880 Jun  3 08:40 result.tar.gz
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc      8617 Jun  3 08:40 runtime_log.err
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc       642 Jun  3 08:40 I4HNDmhEOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmomfKDmlCkDQn.diag
[2025-06-03 08:40:23] -rw-r--r--. 1 boinc boinc     20539 Jun  3 08:40 stderr.txt
[2025-06-03 08:40:23] HITS file was successfully produced:
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc 178862512 Jun  3 08:38 shared/HITS.pool.root.1
[2025-06-03 08:40:23]  *** Contents of shared directory: ***
[2025-06-03 08:40:23] total 384772
[2025-06-03 08:40:23] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:46 start_atlas.sh
[2025-06-03 08:40:23] -rw-r--r--. 2 boinc boinc    508875 Jun  3 06:46 input.tar.gz
[2025-06-03 08:40:23] -rw-r--r--. 2 boinc boinc 213719802 Jun  3 06:46 ATLAS.root_0
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc 178862512 Jun  3 08:38 HITS.pool.root.1
[2025-06-03 08:40:23] -rw-------. 1 boinc boinc    890880 Jun  3 08:40 result.tar.gz
08:40:24 (3245429): run_atlas exited; CPU time 17151.500920
08:40:24 (3245429): called boinc_finish(0)

</stderr_txt>
]]>

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