Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:21:40 (17365): wrapper (7.7.26015): starting
04:21:40 (17365): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 04:21:40] Arguments: --nthreads 8
[2025-06-03 04:21:40] Threads: 8
[2025-06-03 04:21:40] Checking for CVMFS
[2025-06-03 04:21:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:21:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:21:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:21:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:21:42] 2.11.2.0 2201 31149 91084 146724 3 16 18990466 25165824 4634 130560 0 15573231 99.796 17797094 2147 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 04:21:42] CVMFS is ok
[2025-06-03 04:21:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:21:43] Checking for apptainer binary...
[2025-06-03 04:21:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:21:43] Running /usr/bin/apptainer --version
[2025-06-03 04:21:43] apptainer version 1.3.2-1.el7
[2025-06-03 04:21:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:17:52] cg-vwn381.simple-grid.lan
[2025-06-03 06:17:52] apptainer works
[2025-06-03 06:17:52] Set ATHENA_PROC_NUMBER=8
[2025-06-03 06:17:52] Set ATHENA_CORE_NUMBER=8
[2025-06-03 06:17:53] Starting ATLAS job with PandaID=6677387688
[2025-06-03 06:17:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:52:14]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:52:14] 2025-06-03 07:54:58,881 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:52:14] 2025-06-03 07:54:58,890 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:52:14] 2025-06-03 07:54:58,891 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 11:52:14] 2025-06-03 07:54:58,893 | INFO     | sum of deviations: -52860900051.99999
[2025-06-03 11:52:14] 2025-06-03 07:54:58,893 | INFO     | mean x: 1748930759.0
[2025-06-03 11:52:14] 2025-06-03 07:54:58,893 | INFO     | mean y: 2617780.336492891
[2025-06-03 11:52:14] 2025-06-03 07:54:58,893 | INFO     | -- intersect: 31741463953.611965
[2025-06-03 11:52:14] 2025-06-03 07:54:58,893 | INFO     | intersect: 31741463953.611965
[2025-06-03 11:52:14] 2025-06-03 07:54:58,893 | INFO     | chi2: 2.699500311513134
[2025-06-03 11:52:14] 2025-06-03 07:54:58,894 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 11:52:14] 2025-06-03 07:54:58,895 | INFO     | sum of deviations: -34832841163.000015
[2025-06-03 11:52:14] 2025-06-03 07:54:58,896 | INFO     | mean x: 1748930606.5
[2025-06-03 11:52:14] 2025-06-03 07:54:58,896 | INFO     | mean y: 2631175.0873786407
[2025-06-03 11:52:14] 2025-06-03 07:54:58,896 | INFO     | -- intersect: 22477213353.674988
[2025-06-03 11:52:14] 2025-06-03 07:54:58,896 | INFO     | intersect: 22477213353.674988
[2025-06-03 11:52:14] 2025-06-03 07:54:58,896 | INFO     | chi2: 1.9309724797352674
[2025-06-03 11:52:14] 2025-06-03 07:54:58,896 | INFO     | current chi2=1.9309724797352674 (change=28.469262570563973 %)
[2025-06-03 11:52:14] 2025-06-03 07:54:58,897 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 11:52:14] 2025-06-03 07:54:58,898 | INFO     | sum of deviations: -30987539084.000008
[2025-06-03 11:52:14] 2025-06-03 07:54:58,898 | INFO     | mean x: 1748930454.0
[2025-06-03 11:52:14] 2025-06-03 07:54:58,898 | INFO     | mean y: 2634219.9552238807
[2025-06-03 11:52:14] 2025-06-03 07:54:58,898 | INFO     | -- intersect: 21525682564.827755
[2025-06-03 11:52:14] 2025-06-03 07:54:58,899 | INFO     | intersect: 21525682564.827755
[2025-06-03 11:52:14] 2025-06-03 07:54:58,899 | INFO     | chi2: 1.932030657296917
[2025-06-03 11:52:14] 2025-06-03 07:54:58,899 | INFO     | current chi2=1.932030657296917 (change=-0.05480024043608758 %)
[2025-06-03 11:52:14] 2025-06-03 07:54:58,899 | INFO     | right removable region: 200
[2025-06-03 11:52:14] 2025-06-03 07:54:58,899 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 11:52:14] 2025-06-03 07:54:58,901 | INFO     | sum of deviations: -90112222519.50002
[2025-06-03 11:52:14] 2025-06-03 07:54:58,901 | INFO     | mean x: 1748930911.5
[2025-06-03 11:52:14] 2025-06-03 07:54:58,901 | INFO     | mean y: 2645619.9466019417
[2025-06-03 11:52:14] 2025-06-03 07:54:58,902 | INFO     | -- intersect: 58144182051.55378
[2025-06-03 11:52:14] 2025-06-03 07:54:58,907 | INFO     | intersect: 58144182051.55378
[2025-06-03 11:52:14] 2025-06-03 07:54:58,908 | INFO     | chi2: 1.047140849072692
[2025-06-03 11:52:14] 2025-06-03 07:54:58,908 | INFO     | current chi2=1.047140849072692 (change=61.20982669989971 %)
[2025-06-03 11:52:14] 2025-06-03 07:54:58,908 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 11:52:14] 2025-06-03 07:54:58,910 | INFO     | sum of deviations: -93741565292.00002
[2025-06-03 11:52:14] 2025-06-03 07:54:58,910 | INFO     | mean x: 1748931064.0
[2025-06-03 11:52:14] 2025-06-03 07:54:58,910 | INFO     | mean y: 2648452.4776119404
[2025-06-03 11:52:14] 2025-06-03 07:54:58,910 | INFO     | -- intersect: 65112850974.32881
[2025-06-03 11:52:14] 2025-06-03 07:54:58,910 | INFO     | intersect: 65112850974.32881
[2025-06-03 11:52:14] 2025-06-03 07:54:58,910 | INFO     | chi2: 0.9720047553153636
[2025-06-03 11:52:14] 2025-06-03 07:54:58,911 | INFO     | current chi2=0.9720047553153636 (change=7.175356956408107 %)
[2025-06-03 11:52:14] 2025-06-03 07:54:58,911 | INFO     | left removable region: 20
[2025-06-03 11:52:14] 2025-06-03 07:54:58,911 | INFO     | sum of square deviations: 1808350185.0
[2025-06-03 11:52:14] 2025-06-03 07:54:58,912 | INFO     | sum of deviations: -65848199754.5
[2025-06-03 11:52:14] 2025-06-03 07:54:58,912 | INFO     | mean x: 1748931033.5
[2025-06-03 11:52:14] 2025-06-03 07:54:58,912 | INFO     | mean y: 2664124.0944444444
[2025-06-03 11:52:14] 2025-06-03 07:54:58,913 | INFO     | -- intersect: 63687209853.13538
[2025-06-03 11:52:14] 2025-06-03 07:54:58,913 | INFO     | intersect: 63687209853.13538
[2025-06-03 11:52:14] 2025-06-03 07:54:58,913 | INFO     | chi2: 0.16075474859218628
[2025-06-03 11:52:14] 2025-06-03 07:54:58,913 | INFO     | -- intersect: 63687209853.13538
[2025-06-03 11:52:14] 2025-06-03 07:54:58,913 | INFO     | current memory leak: -36.41 B/s (using 180 data points, chi2=0.16)
[2025-06-03 11:52:14] 2025-06-03 07:54:58,914 | INFO     | ..............................
[2025-06-03 11:52:14] 2025-06-03 07:54:58,914 | INFO     | . Timing measurements:
[2025-06-03 11:52:14] 2025-06-03 07:54:58,914 | INFO     | . get job = 0 s
[2025-06-03 11:52:14] 2025-06-03 07:54:58,914 | INFO     | . initial setup = 2 s
[2025-06-03 11:52:14] 2025-06-03 07:54:58,914 | INFO     | . payload setup = 14 s
[2025-06-03 11:52:14] 2025-06-03 07:54:58,915 | INFO     | . stage-in = 0 s
[2025-06-03 11:52:14] 2025-06-03 07:54:58,915 | INFO     | . payload execution = 12874 s
[2025-06-03 11:52:14] 2025-06-03 07:54:58,915 | INFO     | . stage-out = 3 s
[2025-06-03 11:52:14] 2025-06-03 07:54:58,915 | INFO     | . log creation = 1 s
[2025-06-03 11:52:14] 2025-06-03 07:54:58,915 | INFO     | ..............................
[2025-06-03 11:52:14] 2025-06-03 07:54:59,088 | INFO     | 
[2025-06-03 11:52:14] 2025-06-03 07:54:59,088 | INFO     | job summary report
[2025-06-03 11:52:14] 2025-06-03 07:54:59,088 | INFO     | --------------------------------------------------
[2025-06-03 11:52:14] 2025-06-03 07:54:59,088 | INFO     | PanDA job id: 6677387688
[2025-06-03 11:52:14] 2025-06-03 07:54:59,088 | INFO     | task id: 45006595
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | errors: (none)
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | pilot state: finished 
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | transexitcode: 0
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | exeerrorcode: 0
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | exeerrordiag: 
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | exitcode: 0
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | exitmsg: OK
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | cpuconsumptiontime: 48336 s
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | nevents: 400
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | neventsw: 0
[2025-06-03 11:52:14] 2025-06-03 07:54:59,089 | INFO     | pid: 28754
[2025-06-03 11:52:14] 2025-06-03 07:54:59,090 | INFO     | pgrp: 28754
[2025-06-03 11:52:14] 2025-06-03 07:54:59,090 | INFO     | corecount: 8
[2025-06-03 11:52:14] 2025-06-03 07:54:59,090 | INFO     | event service: False
[2025-06-03 11:52:14] 2025-06-03 07:54:59,090 | INFO     | sizes: {0: 2405007, 1: 2405206, 8: 2405412, 12: 2405440, 12893: 2434805, 12896: 2443748, 12897: 2443932, 12980: 2444102}
[2025-06-03 11:52:14] 2025-06-03 07:54:59,090 | INFO     | --------------------------------------------------
[2025-06-03 11:52:14] 2025-06-03 07:54:59,090 | INFO     | 
[2025-06-03 11:52:14] 2025-06-03 07:54:59,090 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-06-03 11:52:14] 2025-06-03 07:54:59,334 | INFO     | PID=20237 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 11:52:14] 2025-06-03 07:54:59,334 | INFO     | .. there are 9 such processes running
[2025-06-03 11:52:14] 2025-06-03 07:54:59,471 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,472 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,473 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:52:14] 2025-06-03 07:54:59,474 | INFO     | job 6677387688 has completed (purged errors)
[2025-06-03 11:52:14] 2025-06-03 07:54:59,474 | INFO     | overall cleanup function is called
[2025-06-03 11:52:14] 2025-06-03 07:55:00,482 | INFO     | --- collectZombieJob: --- 10, [28754]
[2025-06-03 11:52:14] 2025-06-03 07:55:00,482 | INFO     | zombie collector waiting for pid 28754
[2025-06-03 11:52:14] 2025-06-03 07:55:00,482 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:52:14] 2025-06-03 07:55:00,482 | INFO     | collected zombie processes
[2025-06-03 11:52:14] 2025-06-03 07:55:00,482 | INFO     | will attempt to kill all subprocesses of pid=28754
[2025-06-03 11:52:14] 2025-06-03 07:55:00,593 | INFO     | process IDs to be killed: [28754] (in reverse order)
[2025-06-03 11:52:14] 2025-06-03 07:55:01,406 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:52:14] 2025-06-03 07:55:01,406 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:52:14] 2025-06-03 07:55:01,409 | INFO     | did not find any defunct processes belonging to 28754
[2025-06-03 11:52:14] 2025-06-03 07:55:01,412 | INFO     | did not find any defunct processes belonging to 28754
[2025-06-03 11:52:14] 2025-06-03 07:55:01,412 | INFO     | ready for new job
[2025-06-03 11:52:14] 2025-06-03 07:55:01,412 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:52:14] 2025-06-03 07:55:01,414 | INFO     | **************************************
[2025-06-03 11:52:14] 2025-06-03 07:55:01,414 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:52:14] 2025-06-03 07:55:01,415 | INFO     | **************************************
[2025-06-03 11:52:14] 2025-06-03 07:55:01,415 | INFO     | 
[2025-06-03 11:52:14] 2025-06-03 07:55:01,415 | INFO     | pilot is running in a VM
[2025-06-03 11:52:14] 2025-06-03 07:55:01,415 | INFO     | architecture information:
[2025-06-03 11:52:14] 2025-06-03 07:55:01,425 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:52:14] 2025-06-03 07:55:01,623 | INFO     | cat /etc/os-release:
[2025-06-03 11:52:14] NAME="CentOS Linux"
[2025-06-03 11:52:14] VERSION="7 (Core)"
[2025-06-03 11:52:14] ID="centos"
[2025-06-03 11:52:14] ID_LIKE="rhel fedora"
[2025-06-03 11:52:14] VERSION_ID="7"
[2025-06-03 11:52:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:52:14] ANSI_COLOR="0;31"
[2025-06-03 11:52:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:52:14] HOME_URL="https://www.centos.org/"
[2025-06-03 11:52:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:52:14] 
[2025-06-03 11:52:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:52:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:52:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:52:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:52:14] 
[2025-06-03 11:52:14] 2025-06-03 07:55:01,624 | INFO     | **************************************
[2025-06-03 11:52:14] 2025-06-03 07:55:02,127 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-06-03 11:52:14] 2025-06-03 07:55:02,323 | INFO     | sufficient remaining disk space (496707305472 B)
[2025-06-03 11:52:14] 2025-06-03 07:55:02,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:52:14] 2025-06-03 07:55:02,323 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:52:14] 2025-06-03 07:55:02,323 | INFO     | update_server=False
[2025-06-03 11:52:14] 2025-06-03 07:55:02,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:52:14] 2025-06-03 07:55:02,324 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:52:14] 2025-06-03 07:55:02,325 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:52:14] 2025-06-03 07:55:02,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:52:14] 2025-06-03 07:55:02,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:52:14] 2025-06-03 07:55:02,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:52:14] 2025-06-03 07:55:02,451 | INFO     | all data control threads have been joined
[2025-06-03 11:52:14] 2025-06-03 07:55:02,665 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 11:52:14] 2025-06-03 07:55:02,665 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 11:52:14] 2025-06-03 07:55:02,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:52:14] 2025-06-03 07:55:02,666 | INFO     | will abort loop
[2025-06-03 11:52:14] 2025-06-03 07:55:03,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:52:14] 2025-06-03 07:55:03,329 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:03,358 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:03,359 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:03,445 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:03,457 | INFO     | [data] control thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:03,510 | INFO     | all payload control threads have been joined
[2025-06-03 11:52:14] 2025-06-03 07:55:03,671 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:03,904 | INFO     | all job control threads have been joined
[2025-06-03 11:52:14] 2025-06-03 07:55:03,964 | INFO     | [job] validate thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:03,989 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:04,083 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:04,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:52:14] 2025-06-03 07:55:04,336 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:04,450 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:04,515 | INFO     | [payload] control thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:04,881 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:04,910 | INFO     | [job] control thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:05,107 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:07,301 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:52:14] 2025-06-03 07:55:07,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944782415680)>', '<ExcThread(monitor, started 139944127362816)>']
[2025-06-03 11:52:14] 2025-06-03 07:55:08,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:52:14] 2025-06-03 07:55:08,362 | INFO     | [monitor] control thread has ended
[2025-06-03 11:52:14] 2025-06-03 07:55:12,748 | INFO     | all workflow threads have been joined
[2025-06-03 11:52:14] 2025-06-03 07:55:12,748 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:52:14] 2025-06-03 07:55:12,748 | INFO     | traces error code: 0
[2025-06-03 11:52:14] 2025-06-03 07:55:12,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:52:14] 2025-06-03 07:55:13,123 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:52:14] 2025-06-03 07:55:13,211 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:52:14] 2025-06-03 07:55:13,308 [wrapper] pilotpid: 20237
[2025-06-03 11:52:14] 2025-06-03 07:55:13,382 [wrapper] Pilot exit status: 0
[2025-06-03 11:52:14] 2025-06-03 07:55:13,802 [wrapper] pandaids: 6677387688
[2025-06-03 11:52:14] 2025-06-03 07:55:14,612 [wrapper] cleanup supervisor_pilot  6649 20238
[2025-06-03 11:52:14] 2025-06-03 07:55:14,727 [wrapper] Test setup, not cleaning
[2025-06-03 11:52:14] 2025-06-03 07:55:14,842 [wrapper] apfmon messages muted
[2025-06-03 11:52:14] 2025-06-03 07:55:14,981 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:52:14] 2025-06-03 07:55:15,109 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:52:15]  *** Error codes and diagnostics ***
[2025-06-03 11:52:15]     "exeErrorCode": 0,
[2025-06-03 11:52:15]     "exeErrorDiag": "",
[2025-06-03 11:52:15]     "pilotErrorCode": 0,
[2025-06-03 11:52:15]     "pilotErrorDiag": "",
[2025-06-03 11:52:15]  *** Listing of results directory ***
[2025-06-03 11:52:15] total 394636
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:25 pilot3.tar.gz
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:30 queuedata.json
[2025-06-03 11:52:15] -rwx------. 1 boinc boinc     37140 Jun  2 19:31 runpilot2-wrapper.sh
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc       100 Jun  3 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:52:15] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 04:21 run_atlas
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc       105 Jun  3 04:21 job.xml
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc      6392 Jun  3 04:21 init_data.xml
[2025-06-03 11:52:15] -rw-r--r--. 2 boinc boinc 213530493 Jun  3 04:21 EVNT.45006593._000226.pool.root.1
[2025-06-03 11:52:15] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:21 start_atlas.sh
[2025-06-03 11:52:15] drwxrwx--x. 2 boinc boinc        68 Jun  3 04:21 shared
[2025-06-03 11:52:15] -rw-r--r--. 2 boinc boinc    508878 Jun  3 04:21 input.tar.gz
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc         0 Jun  3 04:21 boinc_lockfile
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc      2521 Jun  3 06:17 pandaJob.out
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc    988073 Jun  3 06:18 agis_schedconf.cvmfs.json
[2025-06-03 11:52:15] drwx------. 4 boinc boinc      4096 Jun  3 06:18 pilot3
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc 183705140 Jun  3 09:52 HITS.45006595._005649.pool.root.1
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc       530 Jun  3 09:52 boinc_task_state.xml
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc      1019 Jun  3 09:53 memory_monitor_summary.json
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc   1603667 Jun  3 09:53 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc    388479 Jun  3 09:53 log.45006595._005649.job.log.tgz.1
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc        95 Jun  3 09:54 pilot_heartbeat.json
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc      7705 Jun  3 09:54 heartbeat.json
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc      4726 Jun  3 09:55 pilotlog.txt
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc   1134185 Jun  3 09:55 log.45006595._005649.job.log.1
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc       357 Jun  3 09:55 output.list
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc       620 Jun  3 09:55 runtime_log
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc   1546240 Jun  3 09:55 result.tar.gz
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc      8673 Jun  3 09:55 runtime_log.err
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc       656 Jun  3 09:55 HJ2NDmkBOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJlfKDmlAtmfm.diag
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:52 boinc_mmap_file
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:52 wrapper_checkpoint.txt
[2025-06-03 11:52:15] -rw-r--r--. 1 boinc boinc     20620 Jun  3 11:52 stderr.txt
[2025-06-03 11:52:15] HITS file was successfully produced:
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc 183705140 Jun  3 09:52 shared/HITS.pool.root.1
[2025-06-03 11:52:15]  *** Contents of shared directory: ***
[2025-06-03 11:52:15] total 389956
[2025-06-03 11:52:15] -rw-r--r--. 2 boinc boinc 213530493 Jun  3 04:21 ATLAS.root_0
[2025-06-03 11:52:15] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:21 start_atlas.sh
[2025-06-03 11:52:15] -rw-r--r--. 2 boinc boinc    508878 Jun  3 04:21 input.tar.gz
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc 183705140 Jun  3 09:52 HITS.pool.root.1
[2025-06-03 11:52:15] -rw-------. 1 boinc boinc   1546240 Jun  3 09:55 result.tar.gz
11:52:16 (17365): run_atlas exited; CPU time 48495.338783
11:52:16 (17365): called boinc_finish(0)

</stderr_txt>
]]>

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