Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:37:57 (27899): wrapper (7.7.26015): starting
01:37:57 (27899): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 01:37:57] Arguments: --nthreads 8
[2025-06-03 01:37:57] Threads: 8
[2025-06-03 01:37:57] Checking for CVMFS
[2025-06-03 01:37:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 01:37:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 01:37:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 01:37:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 01:37:59] 2.11.2.0 1205 30986 91256 146722 3 113 16280732 25165824 4266 130560 0 15508754 99.795 17645920 2170 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 01:37:59] CVMFS is ok
[2025-06-03 01:37:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 01:37:59] Checking for apptainer binary...
[2025-06-03 01:37:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 01:37:59] Running /usr/bin/apptainer --version
[2025-06-03 01:37:59] apptainer version 1.3.2-1.el7
[2025-06-03 01:37:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 01:38:01] cg-vwn325.simple-grid.lan
[2025-06-03 01:38:01] apptainer works
[2025-06-03 01:38:01] Set ATHENA_PROC_NUMBER=8
[2025-06-03 01:38:01] Set ATHENA_CORE_NUMBER=8
[2025-06-03 01:38:01] Starting ATLAS job with PandaID=6677387432
[2025-06-03 01:38:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:44:24]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:44:24] 2025-06-03 03:21:53,305 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:44:24] 2025-06-03 03:21:53,305 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:44:24] 2025-06-03 03:21:53,305 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:44:24] 2025-06-03 03:21:53,310 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:44:24] 2025-06-03 03:21:53,311 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 05:44:24] 2025-06-03 03:21:53,313 | INFO     | sum of deviations: 2886916317.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,313 | INFO     | mean x: 1748914181.5
[2025-06-03 05:44:24] 2025-06-03 03:21:53,313 | INFO     | mean y: 2475772.981651376
[2025-06-03 05:44:24] 2025-06-03 03:21:53,314 | INFO     | -- intersect: -1569203508.8622942
[2025-06-03 05:44:24] 2025-06-03 03:21:53,314 | INFO     | intersect: -1569203508.8622942
[2025-06-03 05:44:24] 2025-06-03 03:21:53,314 | INFO     | chi2: 2.3750652526723814
[2025-06-03 05:44:24] 2025-06-03 03:21:53,315 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,316 | INFO     | sum of deviations: 16910567925.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,316 | INFO     | mean x: 1748914029.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,316 | INFO     | mean y: 2485484.5774647887
[2025-06-03 05:44:24] 2025-06-03 03:21:53,317 | INFO     | -- intersect: -9867556339.604202
[2025-06-03 05:44:24] 2025-06-03 03:21:53,317 | INFO     | intersect: -9867556339.604202
[2025-06-03 05:44:24] 2025-06-03 03:21:53,322 | INFO     | chi2: 1.6087582151860882
[2025-06-03 05:44:24] 2025-06-03 03:21:53,323 | INFO     | current chi2=1.6087582151860882 (change=32.26467300736508 %)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,323 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,325 | INFO     | sum of deviations: 16302395545.999998
[2025-06-03 05:44:24] 2025-06-03 03:21:53,325 | INFO     | mean x: 1748913876.5
[2025-06-03 05:44:24] 2025-06-03 03:21:53,325 | INFO     | mean y: 2485034.5096153845
[2025-06-03 05:44:24] 2025-06-03 03:21:53,325 | INFO     | -- intersect: -10215410526.126183
[2025-06-03 05:44:24] 2025-06-03 03:21:53,325 | INFO     | intersect: -10215410526.126183
[2025-06-03 05:44:24] 2025-06-03 03:21:53,326 | INFO     | chi2: 1.6095562244679142
[2025-06-03 05:44:24] 2025-06-03 03:21:53,332 | INFO     | current chi2=1.6095562244679142 (change=-0.049604053256302634 %)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,332 | INFO     | right removable region: 207
[2025-06-03 05:44:24] 2025-06-03 03:21:53,333 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,335 | INFO     | sum of deviations: -30663348118.000004
[2025-06-03 05:44:24] 2025-06-03 03:21:53,335 | INFO     | mean x: 1748914334.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,335 | INFO     | mean y: 2499222.61971831
[2025-06-03 05:44:24] 2025-06-03 03:21:53,335 | INFO     | -- intersect: 17899507916.6178
[2025-06-03 05:44:24] 2025-06-03 03:21:53,335 | INFO     | intersect: 17899507916.6178
[2025-06-03 05:44:24] 2025-06-03 03:21:53,336 | INFO     | chi2: 0.9170254835833209
[2025-06-03 05:44:24] 2025-06-03 03:21:53,336 | INFO     | current chi2=0.9170254835833209 (change=61.3894615084154 %)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,336 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,338 | INFO     | sum of deviations: -25916024368.5
[2025-06-03 05:44:24] 2025-06-03 03:21:53,338 | INFO     | mean x: 1748914486.5
[2025-06-03 05:44:24] 2025-06-03 03:21:53,338 | INFO     | mean y: 2495681.0048076925
[2025-06-03 05:44:24] 2025-06-03 03:21:53,338 | INFO     | -- intersect: 16245956463.107916
[2025-06-03 05:44:24] 2025-06-03 03:21:53,338 | INFO     | intersect: 16245956463.107916
[2025-06-03 05:44:24] 2025-06-03 03:21:53,339 | INFO     | chi2: 0.8989691777506144
[2025-06-03 05:44:24] 2025-06-03 03:21:53,339 | INFO     | current chi2=0.8989691777506144 (change=1.9690080762151438 %)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,339 | INFO     | left removable region: 20
[2025-06-03 05:44:24] 2025-06-03 03:21:53,339 | INFO     | sum of square deviations: 2027639878.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,341 | INFO     | sum of deviations: 2502171444.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,341 | INFO     | mean x: 1748914456.0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,341 | INFO     | mean y: 2493672.1978609627
[2025-06-03 05:44:24] 2025-06-03 03:21:53,341 | INFO     | -- intersect: -2155721826.1668806
[2025-06-03 05:44:24] 2025-06-03 03:21:53,341 | INFO     | intersect: -2155721826.1668806
[2025-06-03 05:44:24] 2025-06-03 03:21:53,341 | INFO     | chi2: 0.025719691074902826
[2025-06-03 05:44:24] 2025-06-03 03:21:53,341 | INFO     | -- intersect: -2155721826.1668806
[2025-06-03 05:44:24] 2025-06-03 03:21:53,342 | INFO     | current memory leak: 1.23 B/s (using 187 data points, chi2=0.03)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | ..............................
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . Timing measurements:
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . get job = 0 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . initial setup = 2 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . payload setup = 13 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . stage-in = 0 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . payload execution = 13263 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . stage-out = 4 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | . log creation = 1 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,343 | INFO     | ..............................
[2025-06-03 05:44:24] 2025-06-03 03:21:53,473 | INFO     | 
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | job summary report
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | --------------------------------------------------
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | PanDA job id: 6677387432
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | task id: 45006595
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | errors: (none)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | pilot state: finished 
[2025-06-03 05:44:24] 2025-06-03 03:21:53,474 | INFO     | transexitcode: 0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | exeerrorcode: 0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | exeerrordiag: 
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | exitcode: 0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | exitmsg: OK
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | cpuconsumptiontime: 50406 s
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | nevents: 400
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | neventsw: 0
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | pid: 9820
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | pgrp: 9820
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | corecount: 8
[2025-06-03 05:44:24] 2025-06-03 03:21:53,475 | INFO     | event service: False
[2025-06-03 05:44:24] 2025-06-03 03:21:53,476 | INFO     | sizes: {0: 2405007, 1: 2405206, 9: 2405412, 12: 2405440, 13280: 2435117, 13281: 2435116, 13286: 2444243, 13287: 2444299, 13385: 2444469}
[2025-06-03 05:44:24] 2025-06-03 03:21:53,476 | INFO     | --------------------------------------------------
[2025-06-03 05:44:24] 2025-06-03 03:21:53,476 | INFO     | 
[2025-06-03 05:44:24] 2025-06-03 03:21:53,476 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-03 05:44:24] 2025-06-03 03:21:53,690 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,690 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,690 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,690 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,690 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,690 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,690 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,692 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,692 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,692 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,692 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:44:24] 2025-06-03 03:21:53,692 | INFO     | job 6677387432 has completed (purged errors)
[2025-06-03 05:44:24] 2025-06-03 03:21:53,692 | INFO     | overall cleanup function is called
[2025-06-03 05:44:24] 2025-06-03 03:21:54,701 | INFO     | --- collectZombieJob: --- 10, [9820]
[2025-06-03 05:44:24] 2025-06-03 03:21:54,701 | INFO     | zombie collector waiting for pid 9820
[2025-06-03 05:44:24] 2025-06-03 03:21:54,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:44:24] 2025-06-03 03:21:54,702 | INFO     | collected zombie processes
[2025-06-03 05:44:24] 2025-06-03 03:21:54,702 | INFO     | will attempt to kill all subprocesses of pid=9820
[2025-06-03 05:44:24] 2025-06-03 03:21:54,837 | INFO     | process IDs to be killed: [9820] (in reverse order)
[2025-06-03 05:44:24] 2025-06-03 03:21:55,626 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:44:24] 2025-06-03 03:21:55,626 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:44:24] 2025-06-03 03:21:55,630 | INFO     | did not find any defunct processes belonging to 9820
[2025-06-03 05:44:24] 2025-06-03 03:21:55,633 | INFO     | did not find any defunct processes belonging to 9820
[2025-06-03 05:44:24] 2025-06-03 03:21:55,633 | INFO     | ready for new job
[2025-06-03 05:44:24] 2025-06-03 03:21:55,633 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:44:24] 2025-06-03 03:21:55,635 | INFO     | **************************************
[2025-06-03 05:44:24] 2025-06-03 03:21:55,636 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:44:24] 2025-06-03 03:21:55,636 | INFO     | **************************************
[2025-06-03 05:44:24] 2025-06-03 03:21:55,636 | INFO     | 
[2025-06-03 05:44:24] 2025-06-03 03:21:55,636 | INFO     | pilot is running in a VM
[2025-06-03 05:44:24] 2025-06-03 03:21:55,636 | INFO     | architecture information:
[2025-06-03 05:44:24] 2025-06-03 03:21:55,637 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:44:24] 2025-06-03 03:21:55,837 | INFO     | cat /etc/os-release:
[2025-06-03 05:44:24] NAME="CentOS Linux"
[2025-06-03 05:44:24] VERSION="7 (Core)"
[2025-06-03 05:44:24] ID="centos"
[2025-06-03 05:44:24] ID_LIKE="rhel fedora"
[2025-06-03 05:44:24] VERSION_ID="7"
[2025-06-03 05:44:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:44:24] ANSI_COLOR="0;31"
[2025-06-03 05:44:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:44:24] HOME_URL="https://www.centos.org/"
[2025-06-03 05:44:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:44:24] 
[2025-06-03 05:44:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:44:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:44:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:44:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:44:24] 
[2025-06-03 05:44:24] 2025-06-03 03:21:55,837 | INFO     | **************************************
[2025-06-03 05:44:24] 2025-06-03 03:21:56,341 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-03 05:44:24] 2025-06-03 03:21:56,616 | INFO     | sufficient remaining disk space (496924360704 B)
[2025-06-03 05:44:24] 2025-06-03 03:21:56,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:44:24] 2025-06-03 03:21:56,617 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:44:24] 2025-06-03 03:21:56,617 | INFO     | update_server=False
[2025-06-03 05:44:24] 2025-06-03 03:21:56,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:44:24] 2025-06-03 03:21:56,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:44:24] 2025-06-03 03:21:56,621 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 05:44:24] 2025-06-03 03:21:56,622 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:44:24] 2025-06-03 03:21:56,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:44:24] 2025-06-03 03:21:56,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:44:24] 2025-06-03 03:21:56,622 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:44:24] 2025-06-03 03:21:56,896 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 05:44:24] 2025-06-03 03:21:56,896 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 05:44:24] 2025-06-03 03:21:56,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:44:24] 2025-06-03 03:21:56,897 | INFO     | will abort loop
[2025-06-03 05:44:24] 2025-06-03 03:21:57,431 | INFO     | all payload control threads have been joined
[2025-06-03 05:44:24] 2025-06-03 03:21:57,459 | INFO     | all data control threads have been joined
[2025-06-03 05:44:24] 2025-06-03 03:21:57,623 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:57,688 | INFO     | all job control threads have been joined
[2025-06-03 05:44:24] 2025-06-03 03:21:57,808 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:57,901 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,135 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,244 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,394 | INFO     | [job] validate thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,437 | INFO     | [payload] control thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,465 | INFO     | [data] control thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,470 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,492 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:44:24] 2025-06-03 03:21:58,533 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,627 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,694 | INFO     | [job] control thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:58,770 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:21:59,498 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:22:00,634 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:44:24] 2025-06-03 03:22:01,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140428457056064)>', '<ExcThread(monitor, started 140428007417600)>']
[2025-06-03 05:44:24] 2025-06-03 03:22:02,658 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:44:24] 2025-06-03 03:22:02,658 | INFO     | [monitor] control thread has ended
[2025-06-03 05:44:24] 2025-06-03 03:22:06,942 | INFO     | all workflow threads have been joined
[2025-06-03 05:44:24] 2025-06-03 03:22:06,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:44:24] 2025-06-03 03:22:06,943 | INFO     | traces error code: 0
[2025-06-03 05:44:24] 2025-06-03 03:22:06,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:44:24] 2025-06-03 03:22:07,315 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:44:24] 2025-06-03 03:22:07,411 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:44:24] 2025-06-03 03:22:07,438 [wrapper] pilotpid: 1241
[2025-06-03 05:44:24] 2025-06-03 03:22:07,478 [wrapper] Pilot exit status: 0
[2025-06-03 05:44:24] 2025-06-03 03:22:07,836 [wrapper] pandaids: 6677387432
[2025-06-03 05:44:24] 2025-06-03 03:22:08,557 [wrapper] cleanup supervisor_pilot   396 1242
[2025-06-03 05:44:24] 2025-06-03 03:22:08,663 [wrapper] Test setup, not cleaning
[2025-06-03 05:44:24] 2025-06-03 03:22:08,743 [wrapper] apfmon messages muted
[2025-06-03 05:44:24] 2025-06-03 03:22:08,761 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:44:24] 2025-06-03 03:22:08,839 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:44:24]  *** Error codes and diagnostics ***
[2025-06-03 05:44:24]     "exeErrorCode": 0,
[2025-06-03 05:44:24]     "exeErrorDiag": "",
[2025-06-03 05:44:24]     "pilotErrorCode": 0,
[2025-06-03 05:44:24]     "pilotErrorDiag": "",
[2025-06-03 05:44:24]  *** Listing of results directory ***
[2025-06-03 05:44:24] total 396288
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:18 pilot3.tar.gz
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:21 queuedata.json
[2025-06-03 05:44:24] -rwx------. 1 boinc boinc     37140 Jun  2 19:22 runpilot2-wrapper.sh
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc       100 Jun  3 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:44:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 01:37 run_atlas
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc       105 Jun  3 01:37 job.xml
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc      6392 Jun  3 01:37 init_data.xml
[2025-06-03 05:44:24] -rw-r--r--. 2 boinc boinc 215272270 Jun  3 01:37 EVNT.45006593._000218.pool.root.1
[2025-06-03 05:44:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:37 start_atlas.sh
[2025-06-03 05:44:24] drwxrwx--x. 2 boinc boinc        68 Jun  3 01:37 shared
[2025-06-03 05:44:24] -rw-r--r--. 2 boinc boinc    508873 Jun  3 01:37 input.tar.gz
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc         0 Jun  3 01:37 boinc_lockfile
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc      2521 Jun  3 01:38 pandaJob.out
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc    988091 Jun  3 01:38 agis_schedconf.cvmfs.json
[2025-06-03 05:44:24] drwx------. 4 boinc boinc      4096 Jun  3 01:38 pilot3
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc 183608548 Jun  3 05:19 HITS.45006595._005439.pool.root.1
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:19 boinc_task_state.xml
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc      1020 Jun  3 05:20 memory_monitor_summary.json
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc   1603667 Jun  3 05:20 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc    379630 Jun  3 05:20 log.45006595._005439.job.log.tgz.1
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc      7685 Jun  3 05:21 heartbeat.json
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc        95 Jun  3 05:21 pilot_heartbeat.json
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc      4726 Jun  3 05:22 pilotlog.txt
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc   1163417 Jun  3 05:22 log.45006595._005439.job.log.1
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc       357 Jun  3 05:22 output.list
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:22 runtime_log
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc   1566720 Jun  3 05:22 result.tar.gz
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc      8673 Jun  3 05:22 runtime_log.err
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc       656 Jun  3 05:22 i0QKDm32Ng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfifKDm8QBsvm.diag
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc      8192 Jun  3 05:44 boinc_mmap_file
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc        28 Jun  3 05:44 wrapper_checkpoint.txt
[2025-06-03 05:44:24] -rw-r--r--. 1 boinc boinc     20501 Jun  3 05:44 stderr.txt
[2025-06-03 05:44:24] HITS file was successfully produced:
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc 183608548 Jun  3 05:19 shared/HITS.pool.root.1
[2025-06-03 05:44:24]  *** Contents of shared directory: ***
[2025-06-03 05:44:24] total 391584
[2025-06-03 05:44:24] -rw-r--r--. 2 boinc boinc 215272270 Jun  3 01:37 ATLAS.root_0
[2025-06-03 05:44:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:37 start_atlas.sh
[2025-06-03 05:44:24] -rw-r--r--. 2 boinc boinc    508873 Jun  3 01:37 input.tar.gz
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc 183608548 Jun  3 05:19 HITS.pool.root.1
[2025-06-03 05:44:24] -rw-------. 1 boinc boinc   1566720 Jun  3 05:22 result.tar.gz
05:44:26 (27899): run_atlas exited; CPU time 50568.310012
05:44:26 (27899): called boinc_finish(0)

</stderr_txt>
]]>

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