Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:56:02 (6912): wrapper (7.7.26015): starting
05:56:02 (6912): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 05:56:02] Arguments: --nthreads 8
[2025-06-03 05:56:02] Threads: 8
[2025-06-03 05:56:02] Checking for CVMFS
[2025-06-03 05:56:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 05:56:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 05:56:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 05:56:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 05:56:04] 2.11.2.0 32329 31368 91684 146724 1 60 22628320 25165825 4635 130560 0 15953986 99.813 18519458 2216 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 05:56:04] CVMFS is ok
[2025-06-03 05:56:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 05:56:04] Checking for apptainer binary...
[2025-06-03 05:56:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 05:56:04] Running /usr/bin/apptainer --version
[2025-06-03 05:56:04] apptainer version 1.3.2-1.el7
[2025-06-03 05:56:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 05:56:20] cg-vwn362.simple-grid.lan
[2025-06-03 05:56:20] apptainer works
[2025-06-03 05:56:20] Set ATHENA_PROC_NUMBER=8
[2025-06-03 05:56:20] Set ATHENA_CORE_NUMBER=8
[2025-06-03 05:56:21] Starting ATLAS job with PandaID=6677386815
[2025-06-03 05:56:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:46:50]  *** The last 200 lines of the pilot log: ***
[2025-06-03 09:46:50] 2025-06-03 07:44:45,807 | INFO     | extracted standard info from prmon json
[2025-06-03 09:46:50] 2025-06-03 07:44:45,807 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 09:46:50] 2025-06-03 07:44:45,807 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 09:46:50] 2025-06-03 07:44:45,808 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 09:46:50] 2025-06-03 07:44:45,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 09:46:50] 2025-06-03 07:44:45,813 | INFO     | fitting pss+swap vs Time
[2025-06-03 09:46:50] 2025-06-03 07:44:45,813 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,815 | INFO     | sum of deviations: 28227995982.499977
[2025-06-03 09:46:50] 2025-06-03 07:44:45,815 | INFO     | mean x: 1748930120.5
[2025-06-03 09:46:50] 2025-06-03 07:44:45,815 | INFO     | mean y: 2568725.797169811
[2025-06-03 09:46:50] 2025-06-03 07:44:45,815 | INFO     | -- intersect: -16707420145.39524
[2025-06-03 09:46:50] 2025-06-03 07:44:45,816 | INFO     | intersect: -16707420145.39524
[2025-06-03 09:46:50] 2025-06-03 07:44:45,816 | INFO     | chi2: 7.739182153545534
[2025-06-03 09:46:50] 2025-06-03 07:44:45,816 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,818 | INFO     | sum of deviations: 45897056664.99999
[2025-06-03 09:46:50] 2025-06-03 07:44:45,818 | INFO     | mean x: 1748929968.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,818 | INFO     | mean y: 2581712.7922705314
[2025-06-03 09:46:50] 2025-06-03 07:44:45,818 | INFO     | -- intersect: -29183643560.78011
[2025-06-03 09:46:50] 2025-06-03 07:44:45,818 | INFO     | intersect: -29183643560.78011
[2025-06-03 09:46:50] 2025-06-03 07:44:45,819 | INFO     | chi2: 6.929662631742879
[2025-06-03 09:46:50] 2025-06-03 07:44:45,819 | INFO     | current chi2=6.929662631742879 (change=10.46001380690842 %)
[2025-06-03 09:46:50] 2025-06-03 07:44:45,819 | INFO     | right removable region: 206
[2025-06-03 09:46:50] 2025-06-03 07:44:45,820 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,821 | INFO     | sum of deviations: -48974789827.00001
[2025-06-03 09:46:50] 2025-06-03 07:44:45,822 | INFO     | mean x: 1748930273.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,822 | INFO     | mean y: 2626340.927536232
[2025-06-03 09:46:50] 2025-06-03 07:44:45,822 | INFO     | -- intersect: 31146006804.82656
[2025-06-03 09:46:50] 2025-06-03 07:44:45,822 | INFO     | intersect: 31146006804.82656
[2025-06-03 09:46:50] 2025-06-03 07:44:45,822 | INFO     | chi2: 2.7731281566931307
[2025-06-03 09:46:50] 2025-06-03 07:44:45,822 | INFO     | current chi2=2.7731281566931307 (change=64.16768462514241 %)
[2025-06-03 09:46:50] 2025-06-03 07:44:45,823 | INFO     | sum of square deviations: 2555770710.5
[2025-06-03 09:46:50] 2025-06-03 07:44:45,824 | INFO     | sum of deviations: -89689083239.99997
[2025-06-03 09:46:50] 2025-06-03 07:44:45,824 | INFO     | mean x: 1748930425.5
[2025-06-03 09:46:50] 2025-06-03 07:44:45,824 | INFO     | mean y: 2658069.405940594
[2025-06-03 09:46:50] 2025-06-03 07:44:45,825 | INFO     | -- intersect: 61377477754.6001
[2025-06-03 09:46:50] 2025-06-03 07:44:45,825 | INFO     | intersect: 61377477754.6001
[2025-06-03 09:46:50] 2025-06-03 07:44:45,825 | INFO     | chi2: 1.1271903835934118
[2025-06-03 09:46:50] 2025-06-03 07:44:45,825 | INFO     | current chi2=1.1271903835934118 (change=59.353108839457626 %)
[2025-06-03 09:46:50] 2025-06-03 07:44:45,826 | INFO     | sum of square deviations: 2370641658.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,827 | INFO     | sum of deviations: -90971773916.00012
[2025-06-03 09:46:50] 2025-06-03 07:44:45,827 | INFO     | mean x: 1748930578.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,827 | INFO     | mean y: 2659083.340101523
[2025-06-03 09:46:50] 2025-06-03 07:44:45,827 | INFO     | -- intersect: 67116689835.17608
[2025-06-03 09:46:50] 2025-06-03 07:44:45,828 | INFO     | intersect: 67116689835.17608
[2025-06-03 09:46:50] 2025-06-03 07:44:45,828 | INFO     | chi2: 1.0741095519688966
[2025-06-03 09:46:50] 2025-06-03 07:44:45,828 | INFO     | current chi2=1.0741095519688966 (change=4.709127437309829 %)
[2025-06-03 09:46:50] 2025-06-03 07:44:45,828 | INFO     | left removable region: 30
[2025-06-03 09:46:50] 2025-06-03 07:44:45,829 | INFO     | sum of square deviations: 1690450300.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,830 | INFO     | sum of deviations: -64280631301.0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,830 | INFO     | mean x: 1748930852.5
[2025-06-03 09:46:50] 2025-06-03 07:44:45,830 | INFO     | mean y: 2669964.352272727
[2025-06-03 09:46:50] 2025-06-03 07:44:45,830 | INFO     | -- intersect: 66507067816.508064
[2025-06-03 09:46:50] 2025-06-03 07:44:45,830 | INFO     | intersect: 66507067816.508064
[2025-06-03 09:46:50] 2025-06-03 07:44:45,831 | INFO     | chi2: 0.15122436696324754
[2025-06-03 09:46:50] 2025-06-03 07:44:45,831 | INFO     | -- intersect: 66507067816.508064
[2025-06-03 09:46:50] 2025-06-03 07:44:45,831 | INFO     | current memory leak: -38.03 B/s (using 176 data points, chi2=0.15)
[2025-06-03 09:46:50] 2025-06-03 07:44:45,832 | INFO     | ..............................
[2025-06-03 09:46:50] 2025-06-03 07:44:45,832 | INFO     | . Timing measurements:
[2025-06-03 09:46:50] 2025-06-03 07:44:45,832 | INFO     | . get job = 0 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,832 | INFO     | . initial setup = 7 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,832 | INFO     | . payload setup = 150 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,832 | INFO     | . stage-in = 0 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,832 | INFO     | . payload execution = 13062 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,833 | INFO     | . stage-out = 3 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,833 | INFO     | . log creation = 1 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,833 | INFO     | ..............................
[2025-06-03 09:46:50] 2025-06-03 07:44:45,978 | INFO     | 
[2025-06-03 09:46:50] 2025-06-03 07:44:45,978 | INFO     | job summary report
[2025-06-03 09:46:50] 2025-06-03 07:44:45,978 | INFO     | --------------------------------------------------
[2025-06-03 09:46:50] 2025-06-03 07:44:45,978 | INFO     | PanDA job id: 6677386815
[2025-06-03 09:46:50] 2025-06-03 07:44:45,978 | INFO     | task id: 45006595
[2025-06-03 09:46:50] 2025-06-03 07:44:45,978 | INFO     | errors: (none)
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | pilot state: finished 
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | transexitcode: 0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | exeerrorcode: 0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | exeerrordiag: 
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | exitcode: 0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | exitmsg: OK
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | cpuconsumptiontime: 46872 s
[2025-06-03 09:46:50] 2025-06-03 07:44:45,979 | INFO     | nevents: 400
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | neventsw: 0
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | pid: 18599
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | pgrp: 18599
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | corecount: 8
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | event service: False
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | sizes: {0: 2404950, 1: 2405205, 12: 2405205, 23: 2405233, 34: 2405261, 44: 2405289, 55: 2405445, 66: 2405473, 77: 2405501, 87: 2405557, 96: 2405791, 98: 2406099, 1
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | --------------------------------------------------
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | 
[2025-06-03 09:46:50] 2025-06-03 07:44:45,980 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-03 09:46:50] 2025-06-03 07:44:46,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 09:46:50] 2025-06-03 07:44:46,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 09:46:50] 2025-06-03 07:44:46,007 | INFO     | job 6677386815 has completed (purged errors)
[2025-06-03 09:46:50] 2025-06-03 07:44:46,007 | INFO     | overall cleanup function is called
[2025-06-03 09:46:50] 2025-06-03 07:44:47,017 | INFO     | --- collectZombieJob: --- 10, [18599]
[2025-06-03 09:46:50] 2025-06-03 07:44:47,017 | INFO     | zombie collector waiting for pid 18599
[2025-06-03 09:46:50] 2025-06-03 07:44:47,017 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 09:46:50] 2025-06-03 07:44:47,017 | INFO     | collected zombie processes
[2025-06-03 09:46:50] 2025-06-03 07:44:47,018 | INFO     | will attempt to kill all subprocesses of pid=18599
[2025-06-03 09:46:50] 2025-06-03 07:44:47,141 | INFO     | process IDs to be killed: [18599] (in reverse order)
[2025-06-03 09:46:50] 2025-06-03 07:44:47,653 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 09:46:50] 2025-06-03 07:44:47,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 09:46:50] 2025-06-03 07:44:47,657 | INFO     | did not find any defunct processes belonging to 18599
[2025-06-03 09:46:50] 2025-06-03 07:44:47,662 | INFO     | did not find any defunct processes belonging to 18599
[2025-06-03 09:46:50] 2025-06-03 07:44:47,663 | INFO     | ready for new job
[2025-06-03 09:46:50] 2025-06-03 07:44:47,663 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 09:46:50] 2025-06-03 07:44:47,667 | INFO     | **************************************
[2025-06-03 09:46:50] 2025-06-03 07:44:47,667 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 09:46:50] 2025-06-03 07:44:47,668 | INFO     | **************************************
[2025-06-03 09:46:50] 2025-06-03 07:44:47,668 | INFO     | 
[2025-06-03 09:46:50] 2025-06-03 07:44:47,668 | INFO     | pilot is running in a VM
[2025-06-03 09:46:50] 2025-06-03 07:44:47,669 | INFO     | architecture information:
[2025-06-03 09:46:50] 2025-06-03 07:44:47,689 | INFO     | executing command: cat /etc/os-release
[2025-06-03 09:46:50] 2025-06-03 07:44:47,934 | INFO     | cat /etc/os-release:
[2025-06-03 09:46:50] NAME="CentOS Linux"
[2025-06-03 09:46:50] VERSION="7 (Core)"
[2025-06-03 09:46:50] ID="centos"
[2025-06-03 09:46:50] ID_LIKE="rhel fedora"
[2025-06-03 09:46:50] VERSION_ID="7"
[2025-06-03 09:46:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 09:46:50] ANSI_COLOR="0;31"
[2025-06-03 09:46:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 09:46:50] HOME_URL="https://www.centos.org/"
[2025-06-03 09:46:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 09:46:50] 
[2025-06-03 09:46:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 09:46:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 09:46:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 09:46:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 09:46:50] 
[2025-06-03 09:46:50] 2025-06-03 07:44:47,935 | INFO     | **************************************
[2025-06-03 09:46:50] 2025-06-03 07:44:48,438 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-03 09:46:50] 2025-06-03 07:44:48,730 | INFO     | sufficient remaining disk space (496763928576 B)
[2025-06-03 09:46:50] 2025-06-03 07:44:48,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 09:46:50] 2025-06-03 07:44:48,730 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 09:46:50] 2025-06-03 07:44:48,730 | INFO     | update_server=False
[2025-06-03 09:46:50] 2025-06-03 07:44:48,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 09:46:50] 2025-06-03 07:44:48,732 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 09:46:50] 2025-06-03 07:44:48,732 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 09:46:50] 2025-06-03 07:44:48,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 09:46:50] 2025-06-03 07:44:48,733 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 09:46:50] 2025-06-03 07:44:48,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 09:46:50] 2025-06-03 07:44:48,833 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:46:50] 2025-06-03 07:44:48,833 | INFO     | aborting loop
[2025-06-03 09:46:50] 2025-06-03 07:44:48,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 09:46:50] 2025-06-03 07:44:49,165 | INFO     | all data control threads have been joined
[2025-06-03 09:46:50] 2025-06-03 07:44:49,484 | INFO     | all payload control threads have been joined
[2025-06-03 09:46:50] 2025-06-03 07:44:49,626 | INFO     | all job control threads have been joined
[2025-06-03 09:46:50] 2025-06-03 07:44:49,737 | INFO     | [job] retrieve thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:49,839 | INFO     | [job] job monitor thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:49,914 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,036 | INFO     | [data] copytool_in thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,171 | INFO     | [data] control thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,301 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,347 | INFO     | [payload] failed_post thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,386 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,490 | INFO     | [payload] control thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,557 | INFO     | [job] validate thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,632 | INFO     | [job] control thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,650 | INFO     | [payload] validate_post thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,870 | INFO     | [data] copytool_out thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:50,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:46:50] 2025-06-03 07:44:51,239 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:52,000 | INFO     | [job] queue monitor thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:52,802 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 09:46:50] 2025-06-03 07:44:53,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974487369536)>', '<ExcThread(monitor, started 139973898520320)>']
[2025-06-03 09:46:50] 2025-06-03 07:44:53,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 09:46:50] 2025-06-03 07:44:53,763 | INFO     | [monitor] control thread has ended
[2025-06-03 09:46:50] 2025-06-03 07:44:58,472 | INFO     | all workflow threads have been joined
[2025-06-03 09:46:50] 2025-06-03 07:44:58,472 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 09:46:50] 2025-06-03 07:44:58,472 | INFO     | traces error code: 0
[2025-06-03 09:46:50] 2025-06-03 07:44:58,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 09:46:50] 2025-06-03 07:44:58,912 [wrapper] ==== pilot stdout END ====
[2025-06-03 09:46:50] 2025-06-03 07:44:58,991 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 09:46:50] 2025-06-03 07:44:59,099 [wrapper] pilotpid: 11999
[2025-06-03 09:46:50] 2025-06-03 07:44:59,210 [wrapper] Pilot exit status: 0
[2025-06-03 09:46:50] 2025-06-03 07:44:59,648 [wrapper] pandaids: 6677386815
[2025-06-03 09:46:50] 2025-06-03 07:45:00,059 [wrapper] cleanup supervisor_pilot  1958 12000
[2025-06-03 09:46:50] 2025-06-03 07:45:00,099 [wrapper] Test setup, not cleaning
[2025-06-03 09:46:50] 2025-06-03 07:45:00,136 [wrapper] apfmon messages muted
[2025-06-03 09:46:50] 2025-06-03 07:45:00,166 [wrapper] ==== wrapper stdout END ====
[2025-06-03 09:46:50] 2025-06-03 07:45:00,201 [wrapper] ==== wrapper stderr END ====
[2025-06-03 09:46:50]  *** Error codes and diagnostics ***
[2025-06-03 09:46:50]     "exeErrorCode": 0,
[2025-06-03 09:46:50]     "exeErrorDiag": "",
[2025-06-03 09:46:50]     "pilotErrorCode": 0,
[2025-06-03 09:46:50]     "pilotErrorDiag": "",
[2025-06-03 09:46:50]  *** Listing of results directory ***
[2025-06-03 09:46:50] total 390200
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:18 queuedata.json
[2025-06-03 09:46:50] -rwx------. 1 boinc boinc     37140 Jun  2 19:18 runpilot2-wrapper.sh
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:18 pilot3.tar.gz
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc       100 Jun  3 05:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 09:46:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 05:56 run_atlas
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc       105 Jun  3 05:56 job.xml
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc      6392 Jun  3 05:56 init_data.xml
[2025-06-03 09:46:50] -rw-r--r--. 2 boinc boinc 217043202 Jun  3 05:56 EVNT.45006593._000211.pool.root.1
[2025-06-03 09:46:50] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:56 start_atlas.sh
[2025-06-03 09:46:50] drwxrwx--x. 2 boinc boinc        68 Jun  3 05:56 shared
[2025-06-03 09:46:50] -rw-r--r--. 2 boinc boinc    508872 Jun  3 05:56 input.tar.gz
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc         0 Jun  3 05:56 boinc_lockfile
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc      2521 Jun  3 05:56 pandaJob.out
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc    988073 Jun  3 05:59 agis_schedconf.cvmfs.json
[2025-06-03 09:46:50] drwx------. 4 boinc boinc      4096 Jun  3 05:59 pilot3
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc 175639217 Jun  3 09:42 HITS.45006595._005257.pool.root.1
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc       531 Jun  3 09:42 boinc_task_state.xml
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc      1019 Jun  3 09:43 memory_monitor_summary.json
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc   1603667 Jun  3 09:43 agis_ddmendpoints.agis.ALL.json
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc    369317 Jun  3 09:43 log.45006595._005257.job.log.tgz.1
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc        95 Jun  3 09:44 pilot_heartbeat.json
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc      7698 Jun  3 09:44 heartbeat.json
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc      4539 Jun  3 09:44 pilotlog.txt
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc   1157410 Jun  3 09:45 log.45006595._005257.job.log.1
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc       357 Jun  3 09:45 output.list
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc       620 Jun  3 09:45 runtime_log
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc   1546240 Jun  3 09:45 result.tar.gz
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc      8659 Jun  3 09:45 runtime_log.err
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc       656 Jun  3 09:45 608KDmzyNg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPwVKDmQRwl1n.diag
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc      8192 Jun  3 09:46 boinc_mmap_file
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc        28 Jun  3 09:46 wrapper_checkpoint.txt
[2025-06-03 09:46:50] -rw-r--r--. 1 boinc boinc     20508 Jun  3 09:46 stderr.txt
[2025-06-03 09:46:50] HITS file was successfully produced:
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc 175639217 Jun  3 09:42 shared/HITS.pool.root.1
[2025-06-03 09:46:50]  *** Contents of shared directory: ***
[2025-06-03 09:46:50] total 385512
[2025-06-03 09:46:50] -rw-r--r--. 2 boinc boinc 217043202 Jun  3 05:56 ATLAS.root_0
[2025-06-03 09:46:50] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:56 start_atlas.sh
[2025-06-03 09:46:50] -rw-r--r--. 2 boinc boinc    508872 Jun  3 05:56 input.tar.gz
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc 175639217 Jun  3 09:42 HITS.pool.root.1
[2025-06-03 09:46:50] -rw-------. 1 boinc boinc   1546240 Jun  3 09:45 result.tar.gz
09:46:52 (6912): run_atlas exited; CPU time 47056.681960
09:46:52 (6912): called boinc_finish(0)

</stderr_txt>
]]>

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