Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:19 (18797): wrapper (7.7.26015): starting
01:38:19 (18797): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 01:38:19] Arguments: --nthreads 8
[2025-06-03 01:38:19] Threads: 8
[2025-06-03 01:38:19] Checking for CVMFS
[2025-06-03 01:38:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 01:38:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 01:38:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 01:38:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 01:38:20] 2.11.2.0 5987 30986 95608 146722 1 154 20434555 25165824 4353 130560 0 16000311 99.795 17293144 2051 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 01:38:20] CVMFS is ok
[2025-06-03 01:38:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 01:38:20] Checking for apptainer binary...
[2025-06-03 01:38:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 01:38:20] Running /usr/bin/apptainer --version
[2025-06-03 01:38:20] apptainer version 1.3.2-1.el7
[2025-06-03 01:38:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 01:38:21] cg-vwn288.simple-grid.lan
[2025-06-03 01:38:21] apptainer works
[2025-06-03 01:38:21] Set ATHENA_PROC_NUMBER=8
[2025-06-03 01:38:21] Set ATHENA_CORE_NUMBER=8
[2025-06-03 01:38:21] Starting ATLAS job with PandaID=6677386798
[2025-06-03 01:38:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:53:24]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:53:24] 2025-06-03 03:15:04,997 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:53:24] 2025-06-03 03:15:04,997 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:53:24] 2025-06-03 03:15:04,998 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:53:24] 2025-06-03 03:15:04,998 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:53:24] 2025-06-03 03:15:05,003 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:53:24] 2025-06-03 03:15:05,003 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,005 | INFO     | sum of deviations: -1639390677.000002
[2025-06-03 05:53:24] 2025-06-03 03:15:05,011 | INFO     | mean x: 1748913987.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,011 | INFO     | mean y: 2474244.6303317538
[2025-06-03 05:53:24] 2025-06-03 03:15:05,011 | INFO     | -- intersect: 986790998.2407427
[2025-06-03 05:53:24] 2025-06-03 03:15:05,011 | INFO     | intersect: 986790998.2407427
[2025-06-03 05:53:24] 2025-06-03 03:15:05,012 | INFO     | chi2: 2.4927059700812926
[2025-06-03 05:53:24] 2025-06-03 03:15:05,012 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 05:53:24] 2025-06-03 03:15:05,014 | INFO     | sum of deviations: 11986219064.499996
[2025-06-03 05:53:24] 2025-06-03 03:15:05,014 | INFO     | mean x: 1748913834.5
[2025-06-03 05:53:24] 2025-06-03 03:15:05,014 | INFO     | mean y: 2484321.480582524
[2025-06-03 05:53:24] 2025-06-03 03:15:05,015 | INFO     | -- intersect: -7731099073.225925
[2025-06-03 05:53:24] 2025-06-03 03:15:05,015 | INFO     | intersect: -7731099073.225925
[2025-06-03 05:53:24] 2025-06-03 03:15:05,015 | INFO     | chi2: 1.725759273069916
[2025-06-03 05:53:24] 2025-06-03 03:15:05,015 | INFO     | current chi2=1.725759273069916 (change=30.767635903177332 %)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,015 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,017 | INFO     | sum of deviations: 11732750614.000004
[2025-06-03 05:53:24] 2025-06-03 03:15:05,017 | INFO     | mean x: 1748913682.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,017 | INFO     | mean y: 2484120.776119403
[2025-06-03 05:53:24] 2025-06-03 03:15:05,017 | INFO     | -- intersect: -8146666940.3488865
[2025-06-03 05:53:24] 2025-06-03 03:15:05,017 | INFO     | intersect: -8146666940.3488865
[2025-06-03 05:53:24] 2025-06-03 03:15:05,018 | INFO     | chi2: 1.7267376817326552
[2025-06-03 05:53:24] 2025-06-03 03:15:05,018 | INFO     | current chi2=1.7267376817326552 (change=-0.05669438826184937 %)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,018 | INFO     | right removable region: 200
[2025-06-03 05:53:24] 2025-06-03 03:15:05,018 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 05:53:24] 2025-06-03 03:15:05,020 | INFO     | sum of deviations: -36269150548.5
[2025-06-03 05:53:24] 2025-06-03 03:15:05,020 | INFO     | mean x: 1748914139.5
[2025-06-03 05:53:24] 2025-06-03 03:15:05,020 | INFO     | mean y: 2500109.5485436893
[2025-06-03 05:53:24] 2025-06-03 03:15:05,020 | INFO     | -- intersect: 23403586626.361526
[2025-06-03 05:53:24] 2025-06-03 03:15:05,020 | INFO     | intersect: 23403586626.361526
[2025-06-03 05:53:24] 2025-06-03 03:15:05,021 | INFO     | chi2: 0.9277664083575128
[2025-06-03 05:53:24] 2025-06-03 03:15:05,021 | INFO     | current chi2=0.9277664083575128 (change=62.78075234331564 %)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,021 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,023 | INFO     | sum of deviations: -31869516307.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,023 | INFO     | mean x: 1748914292.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,023 | INFO     | mean y: 2496595.542288557
[2025-06-03 05:53:24] 2025-06-03 03:15:05,023 | INFO     | -- intersect: 22137936251.472233
[2025-06-03 05:53:24] 2025-06-03 03:15:05,023 | INFO     | intersect: 22137936251.472233
[2025-06-03 05:53:24] 2025-06-03 03:15:05,024 | INFO     | chi2: 0.9132180618322263
[2025-06-03 05:53:24] 2025-06-03 03:15:05,024 | INFO     | current chi2=0.9132180618322263 (change=1.5681044705037754 %)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,024 | INFO     | left removable region: 20
[2025-06-03 05:53:24] 2025-06-03 03:15:05,024 | INFO     | sum of square deviations: 1808350185.0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,025 | INFO     | sum of deviations: -4252856681.9999986
[2025-06-03 05:53:24] 2025-06-03 03:15:05,026 | INFO     | mean x: 1748914261.5
[2025-06-03 05:53:24] 2025-06-03 03:15:05,026 | INFO     | mean y: 2495393.2
[2025-06-03 05:53:24] 2025-06-03 03:15:05,026 | INFO     | -- intersect: 4115571369.8341203
[2025-06-03 05:53:24] 2025-06-03 03:15:05,026 | INFO     | intersect: 4115571369.8341203
[2025-06-03 05:53:24] 2025-06-03 03:15:05,026 | INFO     | chi2: 0.0557495156013047
[2025-06-03 05:53:24] 2025-06-03 03:15:05,026 | INFO     | -- intersect: 4115571369.8341203
[2025-06-03 05:53:24] 2025-06-03 03:15:05,026 | INFO     | current memory leak: -2.35 B/s (using 180 data points, chi2=0.06)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,027 | INFO     | ..............................
[2025-06-03 05:53:24] 2025-06-03 03:15:05,027 | INFO     | . Timing measurements:
[2025-06-03 05:53:24] 2025-06-03 03:15:05,027 | INFO     | . get job = 0 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,028 | INFO     | . initial setup = 2 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,028 | INFO     | . payload setup = 13 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,028 | INFO     | . stage-in = 0 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,028 | INFO     | . payload execution = 12833 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,028 | INFO     | . stage-out = 4 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,028 | INFO     | . log creation = 1 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,028 | INFO     | ..............................
[2025-06-03 05:53:24] 2025-06-03 03:15:05,156 | INFO     | 
[2025-06-03 05:53:24] 2025-06-03 03:15:05,157 | INFO     | job summary report
[2025-06-03 05:53:24] 2025-06-03 03:15:05,157 | INFO     | --------------------------------------------------
[2025-06-03 05:53:24] 2025-06-03 03:15:05,157 | INFO     | PanDA job id: 6677386798
[2025-06-03 05:53:24] 2025-06-03 03:15:05,157 | INFO     | task id: 45006595
[2025-06-03 05:53:24] 2025-06-03 03:15:05,157 | INFO     | errors: (none)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,157 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:53:24] 2025-06-03 03:15:05,157 | INFO     | pilot state: finished 
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | transexitcode: 0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | exeerrorcode: 0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | exeerrordiag: 
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | exitcode: 0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | exitmsg: OK
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | cpuconsumptiontime: 49048 s
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | nevents: 400
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | neventsw: 0
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | pid: 31360
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | pgrp: 31360
[2025-06-03 05:53:24] 2025-06-03 03:15:05,158 | INFO     | corecount: 8
[2025-06-03 05:53:24] 2025-06-03 03:15:05,159 | INFO     | event service: False
[2025-06-03 05:53:24] 2025-06-03 03:15:05,159 | INFO     | sizes: {0: 2404950, 1: 2405205, 2: 2405205, 12: 2405467, 12850: 2434611, 12856: 2443736, 12958: 2443850}
[2025-06-03 05:53:24] 2025-06-03 03:15:05,159 | INFO     | --------------------------------------------------
[2025-06-03 05:53:24] 2025-06-03 03:15:05,159 | INFO     | 
[2025-06-03 05:53:24] 2025-06-03 03:15:05,159 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 05:53:24] 2025-06-03 03:15:05,685 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,685 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,685 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,685 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,685 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,685 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,685 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,686 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:53:24] 2025-06-03 03:15:05,687 | INFO     | job 6677386798 has completed (purged errors)
[2025-06-03 05:53:24] 2025-06-03 03:15:05,687 | INFO     | overall cleanup function is called
[2025-06-03 05:53:24] 2025-06-03 03:15:06,696 | INFO     | --- collectZombieJob: --- 10, [31360]
[2025-06-03 05:53:24] 2025-06-03 03:15:06,697 | INFO     | zombie collector waiting for pid 31360
[2025-06-03 05:53:24] 2025-06-03 03:15:06,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:53:24] 2025-06-03 03:15:06,697 | INFO     | collected zombie processes
[2025-06-03 05:53:24] 2025-06-03 03:15:06,697 | INFO     | will attempt to kill all subprocesses of pid=31360
[2025-06-03 05:53:24] 2025-06-03 03:15:06,835 | INFO     | process IDs to be killed: [31360] (in reverse order)
[2025-06-03 05:53:24] 2025-06-03 03:15:07,928 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:53:24] 2025-06-03 03:15:07,928 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:53:24] 2025-06-03 03:15:07,931 | INFO     | did not find any defunct processes belonging to 31360
[2025-06-03 05:53:24] 2025-06-03 03:15:07,934 | INFO     | did not find any defunct processes belonging to 31360
[2025-06-03 05:53:24] 2025-06-03 03:15:07,935 | INFO     | ready for new job
[2025-06-03 05:53:24] 2025-06-03 03:15:07,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:53:24] 2025-06-03 03:15:07,937 | INFO     | **************************************
[2025-06-03 05:53:24] 2025-06-03 03:15:07,937 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:53:24] 2025-06-03 03:15:07,937 | INFO     | **************************************
[2025-06-03 05:53:24] 2025-06-03 03:15:07,937 | INFO     | 
[2025-06-03 05:53:24] 2025-06-03 03:15:07,938 | INFO     | pilot is running in a VM
[2025-06-03 05:53:24] 2025-06-03 03:15:07,938 | INFO     | architecture information:
[2025-06-03 05:53:24] 2025-06-03 03:15:07,956 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:53:24] 2025-06-03 03:15:08,210 | INFO     | cat /etc/os-release:
[2025-06-03 05:53:24] NAME="CentOS Linux"
[2025-06-03 05:53:24] VERSION="7 (Core)"
[2025-06-03 05:53:24] ID="centos"
[2025-06-03 05:53:24] ID_LIKE="rhel fedora"
[2025-06-03 05:53:24] VERSION_ID="7"
[2025-06-03 05:53:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:53:24] ANSI_COLOR="0;31"
[2025-06-03 05:53:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:53:24] HOME_URL="https://www.centos.org/"
[2025-06-03 05:53:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:53:24] 
[2025-06-03 05:53:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:53:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:53:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:53:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:53:24] 
[2025-06-03 05:53:24] 2025-06-03 03:15:08,210 | INFO     | **************************************
[2025-06-03 05:53:24] 2025-06-03 03:15:08,714 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 05:53:24] 2025-06-03 03:15:08,947 | INFO     | sufficient remaining disk space (497028169728 B)
[2025-06-03 05:53:24] 2025-06-03 03:15:08,948 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:53:24] 2025-06-03 03:15:08,948 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:53:24] 2025-06-03 03:15:08,948 | INFO     | update_server=False
[2025-06-03 05:53:24] 2025-06-03 03:15:08,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:53:24] 2025-06-03 03:15:08,950 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:53:24] 2025-06-03 03:15:09,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:53:24] 2025-06-03 03:15:09,309 | INFO     | aborting loop
[2025-06-03 05:53:24] 2025-06-03 03:15:09,491 | INFO     | all data control threads have been joined
[2025-06-03 05:53:24] 2025-06-03 03:15:09,584 | INFO     | PID=23183 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 05:53:24] 2025-06-03 03:15:09,585 | INFO     | .. there are 9 such processes running
[2025-06-03 05:53:24] 2025-06-03 03:15:09,585 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:53:24] 2025-06-03 03:15:09,585 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:53:24] 2025-06-03 03:15:09,585 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:53:24] 2025-06-03 03:15:09,955 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,086 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:53:24] 2025-06-03 03:15:10,225 | INFO     | all payload control threads have been joined
[2025-06-03 05:53:24] 2025-06-03 03:15:10,269 | INFO     | all job control threads have been joined
[2025-06-03 05:53:24] 2025-06-03 03:15:10,315 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,498 | INFO     | [data] control thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,549 | INFO     | [job] validate thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,555 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,571 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,945 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:10,957 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:11,165 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:11,177 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:11,232 | INFO     | [payload] control thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:11,276 | INFO     | [job] control thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:11,390 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:11,474 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:12,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:53:24] 2025-06-03 03:15:16,291 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:53:24] 2025-06-03 03:15:16,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140105907255104)>', '<ExcThread(monitor, started 140105389963008)>']
[2025-06-03 05:53:24] 2025-06-03 03:15:17,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:53:24] 2025-06-03 03:15:17,634 | INFO     | [monitor] control thread has ended
[2025-06-03 05:53:24] 2025-06-03 03:15:21,770 | INFO     | all workflow threads have been joined
[2025-06-03 05:53:24] 2025-06-03 03:15:21,771 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:53:24] 2025-06-03 03:15:21,771 | INFO     | traces error code: 0
[2025-06-03 05:53:24] 2025-06-03 03:15:21,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:53:24] 2025-06-03 03:15:22,135 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:53:24] 2025-06-03 03:15:22,186 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:53:24] 2025-06-03 03:15:22,268 [wrapper] pilotpid: 23183
[2025-06-03 05:53:24] 2025-06-03 03:15:22,384 [wrapper] Pilot exit status: 0
[2025-06-03 05:53:24] 2025-06-03 03:15:22,869 [wrapper] pandaids: 6677386798
[2025-06-03 05:53:24] 2025-06-03 03:15:23,563 [wrapper] cleanup supervisor_pilot 24267 23184
[2025-06-03 05:53:24] 2025-06-03 03:15:23,641 [wrapper] Test setup, not cleaning
[2025-06-03 05:53:24] 2025-06-03 03:15:23,747 [wrapper] apfmon messages muted
[2025-06-03 05:53:24] 2025-06-03 03:15:23,805 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:53:24] 2025-06-03 03:15:23,906 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:53:24]  *** Error codes and diagnostics ***
[2025-06-03 05:53:24]     "exeErrorCode": 0,
[2025-06-03 05:53:24]     "exeErrorDiag": "",
[2025-06-03 05:53:24]     "pilotErrorCode": 0,
[2025-06-03 05:53:24]     "pilotErrorDiag": "",
[2025-06-03 05:53:24]  *** Listing of results directory ***
[2025-06-03 05:53:24] total 390852
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:18 queuedata.json
[2025-06-03 05:53:24] -rwx------. 1 boinc boinc     37140 Jun  2 19:18 runpilot2-wrapper.sh
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:18 pilot3.tar.gz
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc       100 Jun  3 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:53:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 01:38 run_atlas
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc       105 Jun  3 01:38 job.xml
[2025-06-03 05:53:24] -rw-r--r--. 2 boinc boinc 214323836 Jun  3 01:38 EVNT.45006593._000210.pool.root.1
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc      6391 Jun  3 01:38 init_data.xml
[2025-06-03 05:53:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:38 start_atlas.sh
[2025-06-03 05:53:24] drwxrwx--x. 2 boinc boinc        68 Jun  3 01:38 shared
[2025-06-03 05:53:24] -rw-r--r--. 2 boinc boinc    508875 Jun  3 01:38 input.tar.gz
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc         0 Jun  3 01:38 boinc_lockfile
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc      2521 Jun  3 01:38 pandaJob.out
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc    988091 Jun  3 01:38 agis_schedconf.cvmfs.json
[2025-06-03 05:53:24] drwx------. 4 boinc boinc      4096 Jun  3 01:38 pilot3
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc 179087591 Jun  3 05:12 HITS.45006595._005240.pool.root.1
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:12 boinc_task_state.xml
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc      1016 Jun  3 05:13 memory_monitor_summary.json
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc   1603667 Jun  3 05:13 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc    374365 Jun  3 05:13 log.45006595._005240.job.log.tgz.1
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc        95 Jun  3 05:15 pilot_heartbeat.json
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc      7677 Jun  3 05:15 heartbeat.json
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc      4808 Jun  3 05:15 pilotlog.txt
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc   1124627 Jun  3 05:15 log.45006595._005240.job.log.1
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc       357 Jun  3 05:15 output.list
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:15 runtime_log
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc   1515520 Jun  3 05:15 result.tar.gz
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc      8659 Jun  3 05:15 runtime_log.err
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc       656 Jun  3 05:15 KQjKDmzyNg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm9vVKDmRbL5Hn.diag
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc      8192 Jun  3 05:53 boinc_mmap_file
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc        28 Jun  3 05:53 wrapper_checkpoint.txt
[2025-06-03 05:53:24] -rw-r--r--. 1 boinc boinc     20528 Jun  3 05:53 stderr.txt
[2025-06-03 05:53:24] HITS file was successfully produced:
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc 179087591 Jun  3 05:12 shared/HITS.pool.root.1
[2025-06-03 05:53:24]  *** Contents of shared directory: ***
[2025-06-03 05:53:24] total 386192
[2025-06-03 05:53:24] -rw-r--r--. 2 boinc boinc 214323836 Jun  3 01:38 ATLAS.root_0
[2025-06-03 05:53:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:38 start_atlas.sh
[2025-06-03 05:53:24] -rw-r--r--. 2 boinc boinc    508875 Jun  3 01:38 input.tar.gz
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc 179087591 Jun  3 05:12 HITS.pool.root.1
[2025-06-03 05:53:24] -rw-------. 1 boinc boinc   1515520 Jun  3 05:15 result.tar.gz
05:53:26 (18797): run_atlas exited; CPU time 49216.276501
05:53:26 (18797): called boinc_finish(0)

</stderr_txt>
]]>

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