Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:29:48 (1635): wrapper (7.7.26015): starting
04:29:48 (1635): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 04:29:48] Arguments: --nthreads 8
[2025-06-03 04:29:48] Threads: 8
[2025-06-03 04:29:48] Checking for CVMFS
[2025-06-03 04:29:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:29:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:29:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:29:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:29:49] 2.11.2.0 25320 31158 98276 146724 3 154 18278754 25165824 4105 130560 0 16136650 99.805 17926557 2203 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 04:29:49] CVMFS is ok
[2025-06-03 04:29:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:29:49] Checking for apptainer binary...
[2025-06-03 04:29:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:29:49] Running /usr/bin/apptainer --version
[2025-06-03 04:29:49] apptainer version 1.3.2-1.el7
[2025-06-03 04:29:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:29:50] cg-vwn449.simple-grid.lan
[2025-06-03 04:29:50] apptainer works
[2025-06-03 04:29:50] Set ATHENA_PROC_NUMBER=8
[2025-06-03 04:29:50] Set ATHENA_CORE_NUMBER=8
[2025-06-03 04:29:50] Starting ATLAS job with PandaID=6677391862
[2025-06-03 04:29:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:30:39]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:30:39] 2025-06-03 06:13:41,413 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:30:39] 2025-06-03 06:13:41,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:30:39] 2025-06-03 06:13:41,414 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:30:39] 2025-06-03 06:13:41,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:30:39] 2025-06-03 06:13:41,419 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:30:39] 2025-06-03 06:13:41,420 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 11:30:39] 2025-06-03 06:13:41,421 | INFO     | sum of deviations: -59819225226.5
[2025-06-03 11:30:39] 2025-06-03 06:13:41,422 | INFO     | mean x: 1748924488.5
[2025-06-03 11:30:39] 2025-06-03 06:13:41,422 | INFO     | mean y: 2576735.9770642202
[2025-06-03 11:30:39] 2025-06-03 06:13:41,422 | INFO     | -- intersect: 32569225954.636093
[2025-06-03 11:30:39] 2025-06-03 06:13:41,422 | INFO     | intersect: 32569225954.636093
[2025-06-03 11:30:39] 2025-06-03 06:13:41,422 | INFO     | chi2: 2.893504727775942
[2025-06-03 11:30:39] 2025-06-03 06:13:41,423 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,425 | INFO     | sum of deviations: -42296979893.00001
[2025-06-03 11:30:39] 2025-06-03 06:13:41,425 | INFO     | mean x: 1748924336.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,425 | INFO     | mean y: 2588918.2112676054
[2025-06-03 11:30:39] 2025-06-03 06:13:41,425 | INFO     | -- intersect: 24689839089.53906
[2025-06-03 11:30:39] 2025-06-03 06:13:41,425 | INFO     | intersect: 24689839089.53906
[2025-06-03 11:30:39] 2025-06-03 06:13:41,425 | INFO     | chi2: 2.1326808678693006
[2025-06-03 11:30:39] 2025-06-03 06:13:41,426 | INFO     | current chi2=2.1326808678693006 (change=26.29419791864102 %)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,426 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,427 | INFO     | sum of deviations: -39385046835.50001
[2025-06-03 11:30:39] 2025-06-03 06:13:41,428 | INFO     | mean x: 1748924183.5
[2025-06-03 11:30:39] 2025-06-03 06:13:41,428 | INFO     | mean y: 2591073.168269231
[2025-06-03 11:30:39] 2025-06-03 06:13:41,428 | INFO     | -- intersect: 24688206494.751842
[2025-06-03 11:30:39] 2025-06-03 06:13:41,428 | INFO     | intersect: 24688206494.751842
[2025-06-03 11:30:39] 2025-06-03 06:13:41,428 | INFO     | chi2: 2.132684770737337
[2025-06-03 11:30:39] 2025-06-03 06:13:41,428 | INFO     | current chi2=2.132684770737337 (change=-0.00018300290939491626 %)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,428 | INFO     | right removable region: 207
[2025-06-03 11:30:39] 2025-06-03 06:13:41,429 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,430 | INFO     | sum of deviations: -102512306698.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,431 | INFO     | mean x: 1748924641.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,431 | INFO     | mean y: 2606644.215962441
[2025-06-03 11:30:39] 2025-06-03 06:13:41,431 | INFO     | -- intersect: 59835422340.273674
[2025-06-03 11:30:39] 2025-06-03 06:13:41,431 | INFO     | intersect: 59835422340.273674
[2025-06-03 11:30:39] 2025-06-03 06:13:41,431 | INFO     | chi2: 1.0143148708130738
[2025-06-03 11:30:39] 2025-06-03 06:13:41,432 | INFO     | current chi2=1.0143148708130738 (change=64.94511099027251 %)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,432 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,433 | INFO     | sum of deviations: -103255379143.49998
[2025-06-03 11:30:39] 2025-06-03 06:13:41,434 | INFO     | mean x: 1748924793.5
[2025-06-03 11:30:39] 2025-06-03 06:13:41,434 | INFO     | mean y: 2607154.2451923075
[2025-06-03 11:30:39] 2025-06-03 06:13:41,434 | INFO     | -- intersect: 64720658129.79634
[2025-06-03 11:30:39] 2025-06-03 06:13:41,434 | INFO     | intersect: 64720658129.79634
[2025-06-03 11:30:39] 2025-06-03 06:13:41,434 | INFO     | chi2: 0.9688207658048794
[2025-06-03 11:30:39] 2025-06-03 06:13:41,434 | INFO     | current chi2=0.9688207658048794 (change=4.485205365443017 %)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,434 | INFO     | left removable region: 20
[2025-06-03 11:30:39] 2025-06-03 06:13:41,435 | INFO     | sum of square deviations: 2027639878.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,436 | INFO     | sum of deviations: -73860213248.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,436 | INFO     | mean x: 1748924763.0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,436 | INFO     | mean y: 2617972.7379679144
[2025-06-03 11:30:39] 2025-06-03 06:13:41,437 | INFO     | -- intersect: 63710161581.17348
[2025-06-03 11:30:39] 2025-06-03 06:13:41,437 | INFO     | intersect: 63710161581.17348
[2025-06-03 11:30:39] 2025-06-03 06:13:41,437 | INFO     | chi2: 0.16277172854755537
[2025-06-03 11:30:39] 2025-06-03 06:13:41,437 | INFO     | -- intersect: 63710161581.17348
[2025-06-03 11:30:39] 2025-06-03 06:13:41,437 | INFO     | current memory leak: -36.43 B/s (using 187 data points, chi2=0.16)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,438 | INFO     | ..............................
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . Timing measurements:
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . get job = 0 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . initial setup = 2 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . payload setup = 13 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . stage-in = 0 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . payload execution = 13286 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . stage-out = 3 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | . log creation = 1 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,439 | INFO     | ..............................
[2025-06-03 11:30:39] 2025-06-03 06:13:41,590 | INFO     | 
[2025-06-03 11:30:39] 2025-06-03 06:13:41,590 | INFO     | job summary report
[2025-06-03 11:30:39] 2025-06-03 06:13:41,590 | INFO     | --------------------------------------------------
[2025-06-03 11:30:39] 2025-06-03 06:13:41,590 | INFO     | PanDA job id: 6677391862
[2025-06-03 11:30:39] 2025-06-03 06:13:41,590 | INFO     | task id: 45006595
[2025-06-03 11:30:39] 2025-06-03 06:13:41,590 | INFO     | errors: (none)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | pilot state: finished 
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | transexitcode: 0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | exeerrorcode: 0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | exeerrordiag: 
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | exitcode: 0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | exitmsg: OK
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | cpuconsumptiontime: 50676 s
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | nevents: 400
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | neventsw: 0
[2025-06-03 11:30:39] 2025-06-03 06:13:41,591 | INFO     | pid: 13870
[2025-06-03 11:30:39] 2025-06-03 06:13:41,592 | INFO     | pgrp: 13870
[2025-06-03 11:30:39] 2025-06-03 06:13:41,592 | INFO     | corecount: 8
[2025-06-03 11:30:39] 2025-06-03 06:13:41,592 | INFO     | event service: False
[2025-06-03 11:30:39] 2025-06-03 06:13:41,592 | INFO     | sizes: {0: 2405006, 1: 2405205, 9: 2405411, 12: 2405439, 13303: 2435044, 13304: 2435043, 13309: 2444224, 13392: 2444338}
[2025-06-03 11:30:39] 2025-06-03 06:13:41,592 | INFO     | --------------------------------------------------
[2025-06-03 11:30:39] 2025-06-03 06:13:41,592 | INFO     | 
[2025-06-03 11:30:39] 2025-06-03 06:13:41,592 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-03 11:30:39] 2025-06-03 06:13:41,981 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,981 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,983 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,983 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:30:39] 2025-06-03 06:13:41,983 | INFO     | job 6677391862 has completed (purged errors)
[2025-06-03 11:30:39] 2025-06-03 06:13:41,983 | INFO     | overall cleanup function is called
[2025-06-03 11:30:39] 2025-06-03 06:13:42,992 | INFO     | --- collectZombieJob: --- 10, [13870]
[2025-06-03 11:30:39] 2025-06-03 06:13:42,992 | INFO     | zombie collector waiting for pid 13870
[2025-06-03 11:30:39] 2025-06-03 06:13:42,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:30:39] 2025-06-03 06:13:42,992 | INFO     | collected zombie processes
[2025-06-03 11:30:39] 2025-06-03 06:13:42,992 | INFO     | will attempt to kill all subprocesses of pid=13870
[2025-06-03 11:30:39] 2025-06-03 06:13:43,103 | INFO     | process IDs to be killed: [13870] (in reverse order)
[2025-06-03 11:30:39] 2025-06-03 06:13:43,888 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:30:39] 2025-06-03 06:13:43,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:30:39] 2025-06-03 06:13:43,898 | INFO     | did not find any defunct processes belonging to 13870
[2025-06-03 11:30:39] 2025-06-03 06:13:43,901 | INFO     | did not find any defunct processes belonging to 13870
[2025-06-03 11:30:39] 2025-06-03 06:13:43,902 | INFO     | ready for new job
[2025-06-03 11:30:39] 2025-06-03 06:13:43,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:30:39] 2025-06-03 06:13:43,904 | INFO     | **************************************
[2025-06-03 11:30:39] 2025-06-03 06:13:43,904 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:30:39] 2025-06-03 06:13:43,904 | INFO     | **************************************
[2025-06-03 11:30:39] 2025-06-03 06:13:43,904 | INFO     | 
[2025-06-03 11:30:39] 2025-06-03 06:13:43,906 | INFO     | pilot is running in a VM
[2025-06-03 11:30:39] 2025-06-03 06:13:43,906 | INFO     | architecture information:
[2025-06-03 11:30:39] 2025-06-03 06:13:43,908 | INFO     | PID=5349 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 11:30:39] 2025-06-03 06:13:43,909 | INFO     | .. there are 9 such processes running
[2025-06-03 11:30:39] 2025-06-03 06:13:43,923 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:30:39] 2025-06-03 06:13:44,228 | INFO     | cat /etc/os-release:
[2025-06-03 11:30:39] NAME="CentOS Linux"
[2025-06-03 11:30:39] VERSION="7 (Core)"
[2025-06-03 11:30:39] ID="centos"
[2025-06-03 11:30:39] ID_LIKE="rhel fedora"
[2025-06-03 11:30:39] VERSION_ID="7"
[2025-06-03 11:30:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:30:39] ANSI_COLOR="0;31"
[2025-06-03 11:30:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:30:39] HOME_URL="https://www.centos.org/"
[2025-06-03 11:30:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:30:39] 
[2025-06-03 11:30:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:30:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:30:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:30:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:30:39] 
[2025-06-03 11:30:39] 2025-06-03 06:13:44,228 | INFO     | **************************************
[2025-06-03 11:30:39] 2025-06-03 06:13:44,733 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-03 11:30:39] 2025-06-03 06:13:44,973 | INFO     | sufficient remaining disk space (496910729216 B)
[2025-06-03 11:30:39] 2025-06-03 06:13:44,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:30:39] 2025-06-03 06:13:44,973 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:30:39] 2025-06-03 06:13:44,973 | INFO     | update_server=False
[2025-06-03 11:30:39] 2025-06-03 06:13:44,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:30:39] 2025-06-03 06:13:45,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:30:39] 2025-06-03 06:13:45,107 | INFO     | all data control threads have been joined
[2025-06-03 11:30:39] 2025-06-03 06:13:45,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:30:39] 2025-06-03 06:13:45,157 | INFO     | aborting loop
[2025-06-03 11:30:39] 2025-06-03 06:13:45,328 | INFO     | all job control threads have been joined
[2025-06-03 11:30:39] 2025-06-03 06:13:45,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:30:39] 2025-06-03 06:13:45,917 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:30:39] 2025-06-03 06:13:45,917 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:30:39] 2025-06-03 06:13:45,917 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:30:39] 2025-06-03 06:13:45,980 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,053 | INFO     | all payload control threads have been joined
[2025-06-03 11:30:39] 2025-06-03 06:13:46,064 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,113 | INFO     | [data] control thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,124 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,143 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,164 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,334 | INFO     | [job] control thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,383 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:30:39] 2025-06-03 06:13:46,715 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,782 | INFO     | [job] validate thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:46,910 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:47,059 | INFO     | [payload] control thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:47,458 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:47,605 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:47,863 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:49,035 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:30:39] 2025-06-03 06:13:49,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661917562688)>', '<ExcThread(monitor, started 140661487548160)>']
[2025-06-03 11:30:39] 2025-06-03 06:13:49,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:30:39] 2025-06-03 06:13:49,940 | INFO     | [monitor] control thread has ended
[2025-06-03 11:30:39] 2025-06-03 06:13:54,682 | INFO     | all workflow threads have been joined
[2025-06-03 11:30:39] 2025-06-03 06:13:54,682 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:30:39] 2025-06-03 06:13:54,682 | INFO     | traces error code: 0
[2025-06-03 11:30:39] 2025-06-03 06:13:54,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:30:39] 2025-06-03 06:13:55,022 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:30:39] 2025-06-03 06:13:55,055 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:30:39] 2025-06-03 06:13:55,087 [wrapper] pilotpid: 5349
[2025-06-03 11:30:39] 2025-06-03 06:13:55,155 [wrapper] Pilot exit status: 0
[2025-06-03 11:30:39] 2025-06-03 06:13:55,577 [wrapper] pandaids: 6677391862
[2025-06-03 11:30:39] 2025-06-03 06:13:55,804 [wrapper] cleanup supervisor_pilot   714 5350
[2025-06-03 11:30:39] 2025-06-03 06:13:55,898 [wrapper] Test setup, not cleaning
[2025-06-03 11:30:39] 2025-06-03 06:13:55,985 [wrapper] apfmon messages muted
[2025-06-03 11:30:39] 2025-06-03 06:13:56,052 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:30:39] 2025-06-03 06:13:56,108 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:30:39]  *** Error codes and diagnostics ***
[2025-06-03 11:30:39]     "exeErrorCode": 0,
[2025-06-03 11:30:39]     "exeErrorDiag": "",
[2025-06-03 11:30:39]     "pilotErrorCode": 0,
[2025-06-03 11:30:39]     "pilotErrorDiag": "",
[2025-06-03 11:30:39]  *** Listing of results directory ***
[2025-06-03 11:30:39] total 392804
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:02 pilot3.tar.gz
[2025-06-03 11:30:39] -rwx------. 1 boinc boinc     37140 Jun  2 20:27 runpilot2-wrapper.sh
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:27 queuedata.json
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc       100 Jun  3 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:30:39] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 04:29 run_atlas
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc       105 Jun  3 04:29 job.xml
[2025-06-03 11:30:39] -rw-r--r--. 2 boinc boinc 214385992 Jun  3 04:29 EVNT.45006593._000300.pool.root.1
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc      6392 Jun  3 04:29 init_data.xml
[2025-06-03 11:30:39] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:29 start_atlas.sh
[2025-06-03 11:30:39] drwxrwx--x. 2 boinc boinc        68 Jun  3 04:29 shared
[2025-06-03 11:30:39] -rw-r--r--. 2 boinc boinc    508874 Jun  3 04:29 input.tar.gz
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc         0 Jun  3 04:29 boinc_lockfile
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc      2521 Jun  3 04:29 pandaJob.out
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc    988073 Jun  3 04:30 agis_schedconf.cvmfs.json
[2025-06-03 11:30:39] drwx------. 4 boinc boinc      4096 Jun  3 04:30 pilot3
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc 180907680 Jun  3 08:10 HITS.45006595._007501.pool.root.1
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc       531 Jun  3 08:11 boinc_task_state.xml
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc      1030 Jun  3 08:12 memory_monitor_summary.json
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc   1603667 Jun  3 08:12 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc    393311 Jun  3 08:12 log.45006595._007501.job.log.tgz.1
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc        95 Jun  3 08:13 pilot_heartbeat.json
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc      7694 Jun  3 08:13 heartbeat.json
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc      4807 Jun  3 08:13 pilotlog.txt
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc   1161141 Jun  3 08:13 log.45006595._007501.job.log.1
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc       357 Jun  3 08:13 output.list
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc       620 Jun  3 08:13 runtime_log
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc   1576960 Jun  3 08:13 result.tar.gz
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc       656 Jun  3 08:13 ua8MDmg3Og7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcBWKDmhcqP9n.diag
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc      8659 Jun  3 08:13 runtime_log.err
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:30 boinc_mmap_file
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:30 wrapper_checkpoint.txt
[2025-06-03 11:30:39] -rw-r--r--. 1 boinc boinc     20543 Jun  3 11:30 stderr.txt
[2025-06-03 11:30:39] HITS file was successfully produced:
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc 180907680 Jun  3 08:10 shared/HITS.pool.root.1
[2025-06-03 11:30:39]  *** Contents of shared directory: ***
[2025-06-03 11:30:39] total 388088
[2025-06-03 11:30:39] -rw-r--r--. 2 boinc boinc 214385992 Jun  3 04:29 ATLAS.root_0
[2025-06-03 11:30:39] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:29 start_atlas.sh
[2025-06-03 11:30:39] -rw-r--r--. 2 boinc boinc    508874 Jun  3 04:29 input.tar.gz
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc 180907680 Jun  3 08:10 HITS.pool.root.1
[2025-06-03 11:30:39] -rw-------. 1 boinc boinc   1576960 Jun  3 08:13 result.tar.gz
11:30:41 (1635): run_atlas exited; CPU time 50842.599830
11:30:41 (1635): called boinc_finish(0)

</stderr_txt>
]]>

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