Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:29:29 (23683): wrapper (7.7.26015): starting
01:29:29 (23683): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 01:29:29] Arguments: --nthreads 8
[2025-06-03 01:29:29] Threads: 8
[2025-06-03 01:29:29] Checking for CVMFS
[2025-06-03 01:29:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 01:29:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 01:29:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 01:29:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 01:29:31] 2.11.2.0 13438 30998 100800 146722 3 60 18140333 25165825 4635 130560 0 15474434 99.799 17726949 1988 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 01:29:31] CVMFS is ok
[2025-06-03 01:29:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 01:29:31] Checking for apptainer binary...
[2025-06-03 01:29:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 01:29:31] Running /usr/bin/apptainer --version
[2025-06-03 01:29:31] apptainer version 1.3.2-1.el7
[2025-06-03 01:29:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 01:29:45] cg-vwn353.simple-grid.lan
[2025-06-03 01:29:45] apptainer works
[2025-06-03 01:29:45] Set ATHENA_PROC_NUMBER=8
[2025-06-03 01:29:45] Set ATHENA_CORE_NUMBER=8
[2025-06-03 01:29:45] Starting ATLAS job with PandaID=6677375785
[2025-06-03 01:29:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:34:49]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:34:49] 2025-06-03 03:19:58,071 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:34:49] 2025-06-03 03:19:58,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:34:49] 2025-06-03 03:19:58,071 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:34:49] 2025-06-03 03:19:58,072 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:34:49] 2025-06-03 03:19:58,076 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:34:49] 2025-06-03 03:19:58,077 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 05:34:49] 2025-06-03 03:19:58,078 | INFO     | sum of deviations: 97125847549.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,078 | INFO     | mean x: 1748914182.5
[2025-06-03 05:34:49] 2025-06-03 03:19:58,079 | INFO     | mean y: 2402653.121495327
[2025-06-03 05:34:49] 2025-06-03 03:19:58,079 | INFO     | -- intersect: -55895184342.07922
[2025-06-03 05:34:49] 2025-06-03 03:19:58,079 | INFO     | intersect: -55895184342.07922
[2025-06-03 05:34:49] 2025-06-03 03:19:58,079 | INFO     | chi2: 7.281962865694729
[2025-06-03 05:34:49] 2025-06-03 03:19:58,080 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,081 | INFO     | sum of deviations: 109260345627.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,082 | INFO     | mean x: 1748914030.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,082 | INFO     | mean y: 2411342.3444976076
[2025-06-03 05:34:49] 2025-06-03 03:19:58,082 | INFO     | -- intersect: -67500684647.1232
[2025-06-03 05:34:49] 2025-06-03 03:19:58,082 | INFO     | intersect: -67500684647.1232
[2025-06-03 05:34:49] 2025-06-03 03:19:58,082 | INFO     | chi2: 6.512193614798883
[2025-06-03 05:34:49] 2025-06-03 03:19:58,082 | INFO     | current chi2=6.512193614798883 (change=10.570903272828037 %)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,082 | INFO     | right removable region: 208
[2025-06-03 05:34:49] 2025-06-03 03:19:58,083 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,085 | INFO     | sum of deviations: 24058752030.999996
[2025-06-03 05:34:49] 2025-06-03 03:19:58,085 | INFO     | mean x: 1748914335.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,085 | INFO     | mean y: 2456159.23923445
[2025-06-03 05:34:49] 2025-06-03 03:19:58,085 | INFO     | -- intersect: -14861495822.959478
[2025-06-03 05:34:49] 2025-06-03 03:19:58,085 | INFO     | intersect: -14861495822.959478
[2025-06-03 05:34:49] 2025-06-03 03:19:58,085 | INFO     | chi2: 2.408790192379721
[2025-06-03 05:34:49] 2025-06-03 03:19:58,086 | INFO     | current chi2=2.408790192379721 (change=66.92114149980752 %)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,086 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,087 | INFO     | sum of deviations: -13390981598.5
[2025-06-03 05:34:49] 2025-06-03 03:19:58,088 | INFO     | mean x: 1748914487.5
[2025-06-03 05:34:49] 2025-06-03 03:19:58,088 | INFO     | mean y: 2484759.56372549
[2025-06-03 05:34:49] 2025-06-03 03:19:58,088 | INFO     | -- intersect: 8899052670.000935
[2025-06-03 05:34:49] 2025-06-03 03:19:58,088 | INFO     | intersect: 8899052670.000935
[2025-06-03 05:34:49] 2025-06-03 03:19:58,088 | INFO     | chi2: 0.9272612604691725
[2025-06-03 05:34:49] 2025-06-03 03:19:58,088 | INFO     | current chi2=0.9272612604691725 (change=61.50510478651935 %)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,089 | INFO     | sum of square deviations: 2443580700.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,090 | INFO     | sum of deviations: -13290345354.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,090 | INFO     | mean x: 1748914640.0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,090 | INFO     | mean y: 2484618.0653266334
[2025-06-03 05:34:49] 2025-06-03 03:19:58,091 | INFO     | -- intersect: 9514623734.349304
[2025-06-03 05:34:49] 2025-06-03 03:19:58,091 | INFO     | intersect: 9514623734.349304
[2025-06-03 05:34:49] 2025-06-03 03:19:58,091 | INFO     | chi2: 0.9016599567214825
[2025-06-03 05:34:49] 2025-06-03 03:19:58,091 | INFO     | current chi2=0.9016599567214825 (change=2.760959056429935 %)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,091 | INFO     | left removable region: 30
[2025-06-03 05:34:49] 2025-06-03 03:19:58,092 | INFO     | sum of square deviations: 1748737904.5
[2025-06-03 05:34:49] 2025-06-03 03:19:58,093 | INFO     | sum of deviations: 3801277738.5
[2025-06-03 05:34:49] 2025-06-03 03:19:58,093 | INFO     | mean x: 1748914914.5
[2025-06-03 05:34:49] 2025-06-03 03:19:58,093 | INFO     | mean y: 2493226.9606741574
[2025-06-03 05:34:49] 2025-06-03 03:19:58,093 | INFO     | -- intersect: -3799169282.8482566
[2025-06-03 05:34:49] 2025-06-03 03:19:58,093 | INFO     | intersect: -3799169282.8482566
[2025-06-03 05:34:49] 2025-06-03 03:19:58,094 | INFO     | chi2: 0.0005862950692742258
[2025-06-03 05:34:49] 2025-06-03 03:19:58,094 | INFO     | -- intersect: -3799169282.8482566
[2025-06-03 05:34:49] 2025-06-03 03:19:58,094 | INFO     | current memory leak: 2.17 B/s (using 178 data points, chi2=0.00)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | ..............................
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | . Timing measurements:
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | . get job = 0 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | . initial setup = 8 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | . payload setup = 160 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | . stage-in = 0 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | . payload execution = 13175 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,095 | INFO     | . stage-out = 4 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,096 | INFO     | . log creation = 1 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,096 | INFO     | ..............................
[2025-06-03 05:34:49] 2025-06-03 03:19:58,246 | INFO     | 
[2025-06-03 05:34:49] 2025-06-03 03:19:58,246 | INFO     | job summary report
[2025-06-03 05:34:49] 2025-06-03 03:19:58,246 | INFO     | --------------------------------------------------
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | PanDA job id: 6677375785
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | task id: 45006595
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | errors: (none)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | pilot state: finished 
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | transexitcode: 0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | exeerrorcode: 0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | exeerrordiag: 
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | exitcode: 0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | exitmsg: OK
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | cpuconsumptiontime: 48564 s
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | nevents: 400
[2025-06-03 05:34:49] 2025-06-03 03:19:58,247 | INFO     | neventsw: 0
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | pid: 5152
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | pgrp: 5152
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | corecount: 8
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | event service: False
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | sizes: {0: 2405002, 1: 2405201, 12: 2405201, 23: 2405229, 34: 2405257, 44: 2405285, 55: 2405441, 66: 2405469, 77: 2405497, 87: 2405553, 92: 2405787, 98: 2406095, 1
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | --------------------------------------------------
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | 
[2025-06-03 05:34:49] 2025-06-03 03:19:58,248 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-03 05:34:49] 2025-06-03 03:19:58,728 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,731 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,731 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,731 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,731 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:34:49] 2025-06-03 03:19:58,731 | INFO     | job 6677375785 has completed (purged errors)
[2025-06-03 05:34:49] 2025-06-03 03:19:58,732 | INFO     | overall cleanup function is called
[2025-06-03 05:34:49] 2025-06-03 03:19:59,741 | INFO     | --- collectZombieJob: --- 10, [5152]
[2025-06-03 05:34:49] 2025-06-03 03:19:59,741 | INFO     | zombie collector waiting for pid 5152
[2025-06-03 05:34:49] 2025-06-03 03:19:59,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:34:49] 2025-06-03 03:19:59,741 | INFO     | collected zombie processes
[2025-06-03 05:34:49] 2025-06-03 03:19:59,742 | INFO     | will attempt to kill all subprocesses of pid=5152
[2025-06-03 05:34:49] 2025-06-03 03:19:59,834 | INFO     | process IDs to be killed: [5152] (in reverse order)
[2025-06-03 05:34:49] 2025-06-03 03:20:00,532 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:34:49] 2025-06-03 03:20:00,533 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:34:49] 2025-06-03 03:20:00,536 | INFO     | did not find any defunct processes belonging to 5152
[2025-06-03 05:34:49] 2025-06-03 03:20:00,539 | INFO     | did not find any defunct processes belonging to 5152
[2025-06-03 05:34:49] 2025-06-03 03:20:00,539 | INFO     | ready for new job
[2025-06-03 05:34:49] 2025-06-03 03:20:00,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:34:49] 2025-06-03 03:20:00,541 | INFO     | **************************************
[2025-06-03 05:34:49] 2025-06-03 03:20:00,542 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:34:49] 2025-06-03 03:20:00,542 | INFO     | **************************************
[2025-06-03 05:34:49] 2025-06-03 03:20:00,542 | INFO     | 
[2025-06-03 05:34:49] 2025-06-03 03:20:00,542 | INFO     | pilot is running in a VM
[2025-06-03 05:34:49] 2025-06-03 03:20:00,542 | INFO     | architecture information:
[2025-06-03 05:34:49] 2025-06-03 03:20:00,543 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:34:49] 2025-06-03 03:20:00,659 | INFO     | cat /etc/os-release:
[2025-06-03 05:34:49] NAME="CentOS Linux"
[2025-06-03 05:34:49] VERSION="7 (Core)"
[2025-06-03 05:34:49] ID="centos"
[2025-06-03 05:34:49] ID_LIKE="rhel fedora"
[2025-06-03 05:34:49] VERSION_ID="7"
[2025-06-03 05:34:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:34:49] ANSI_COLOR="0;31"
[2025-06-03 05:34:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:34:49] HOME_URL="https://www.centos.org/"
[2025-06-03 05:34:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:34:49] 
[2025-06-03 05:34:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:34:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:34:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:34:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:34:49] 
[2025-06-03 05:34:49] 2025-06-03 03:20:00,660 | INFO     | **************************************
[2025-06-03 05:34:49] 2025-06-03 03:20:01,163 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-03 05:34:49] 2025-06-03 03:20:01,364 | INFO     | sufficient remaining disk space (496797483008 B)
[2025-06-03 05:34:49] 2025-06-03 03:20:01,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:34:49] 2025-06-03 03:20:01,365 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:34:49] 2025-06-03 03:20:01,365 | INFO     | update_server=False
[2025-06-03 05:34:49] 2025-06-03 03:20:01,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:34:49] 2025-06-03 03:20:01,368 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 05:34:49] 2025-06-03 03:20:01,369 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 05:34:49] 2025-06-03 03:20:01,369 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:34:49] 2025-06-03 03:20:01,369 | INFO     | will abort loop
[2025-06-03 05:34:49] 2025-06-03 03:20:02,018 | INFO     | all job control threads have been joined
[2025-06-03 05:34:49] 2025-06-03 03:20:02,194 | INFO     | all data control threads have been joined
[2025-06-03 05:34:49] 2025-06-03 03:20:02,302 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:34:49] 2025-06-03 03:20:02,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:34:49] 2025-06-03 03:20:02,303 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:34:49] 2025-06-03 03:20:02,371 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:02,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:34:49] 2025-06-03 03:20:02,376 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:02,446 | INFO     | all payload control threads have been joined
[2025-06-03 05:34:49] 2025-06-03 03:20:02,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:34:49] 2025-06-03 03:20:02,710 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,024 | INFO     | [job] control thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,060 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,200 | INFO     | [data] control thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,260 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:34:49] 2025-06-03 03:20:03,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,376 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,452 | INFO     | [payload] control thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,578 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,584 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,624 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:03,625 | INFO     | [job] validate thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:04,266 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:04,560 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:06,383 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:34:49] 2025-06-03 03:20:06,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140699165161280)>', '<ExcThread(monitor, started 140698850400000)>']
[2025-06-03 05:34:49] 2025-06-03 03:20:07,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:34:49] 2025-06-03 03:20:07,331 | INFO     | [monitor] control thread has ended
[2025-06-03 05:34:49] 2025-06-03 03:20:11,818 | INFO     | all workflow threads have been joined
[2025-06-03 05:34:49] 2025-06-03 03:20:11,818 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:34:49] 2025-06-03 03:20:11,819 | INFO     | traces error code: 0
[2025-06-03 05:34:49] 2025-06-03 03:20:11,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:34:49] 2025-06-03 03:20:12,208 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:34:49] 2025-06-03 03:20:12,273 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:34:49] 2025-06-03 03:20:12,320 [wrapper] pilotpid: 28963
[2025-06-03 05:34:49] 2025-06-03 03:20:12,421 [wrapper] Pilot exit status: 0
[2025-06-03 05:34:49] 2025-06-03 03:20:12,756 [wrapper] pandaids: 6677375785
[2025-06-03 05:34:49] 2025-06-03 03:20:13,568 [wrapper] cleanup supervisor_pilot 14913 28964
[2025-06-03 05:34:49] 2025-06-03 03:20:13,671 [wrapper] Test setup, not cleaning
[2025-06-03 05:34:49] 2025-06-03 03:20:13,774 [wrapper] apfmon messages muted
[2025-06-03 05:34:49] 2025-06-03 03:20:13,882 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:34:49] 2025-06-03 03:20:13,922 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:34:49]  *** Error codes and diagnostics ***
[2025-06-03 05:34:49]     "exeErrorCode": 0,
[2025-06-03 05:34:49]     "exeErrorDiag": "",
[2025-06-03 05:34:49]     "pilotErrorCode": 0,
[2025-06-03 05:34:49]     "pilotErrorDiag": "",
[2025-06-03 05:34:49]  *** Listing of results directory ***
[2025-06-03 05:34:49] total 394704
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:48 queuedata.json
[2025-06-03 05:34:49] -rwx------. 1 boinc boinc     37140 Jun  2 17:48 runpilot2-wrapper.sh
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc       100 Jun  3 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:34:49] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 01:29 run_atlas
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc       105 Jun  3 01:29 job.xml
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc      6393 Jun  3 01:29 init_data.xml
[2025-06-03 05:34:49] -rw-r--r--. 2 boinc boinc 213682062 Jun  3 01:29 EVNT.45006593._000012.pool.root.1
[2025-06-03 05:34:49] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:29 start_atlas.sh
[2025-06-03 05:34:49] drwxrwx--x. 2 boinc boinc        68 Jun  3 01:29 shared
[2025-06-03 05:34:49] -rw-r--r--. 2 boinc boinc    508874 Jun  3 01:29 input.tar.gz
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc         0 Jun  3 01:29 boinc_lockfile
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc      2519 Jun  3 01:29 pandaJob.out
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc    988091 Jun  3 01:32 agis_schedconf.cvmfs.json
[2025-06-03 05:34:49] drwx------. 4 boinc boinc      4096 Jun  3 01:32 pilot3
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc 183540829 Jun  3 05:17 HITS.45006595._000300.pool.root.1
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:17 boinc_task_state.xml
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc      1013 Jun  3 05:18 memory_monitor_summary.json
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc   1603667 Jun  3 05:18 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc    392863 Jun  3 05:18 log.45006595._000300.job.log.tgz.1
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc        95 Jun  3 05:19 pilot_heartbeat.json
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc      7682 Jun  3 05:19 heartbeat.json
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc      4603 Jun  3 05:20 pilotlog.txt
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc   1173583 Jun  3 05:20 log.45006595._000300.job.log.1
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc       357 Jun  3 05:20 output.list
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:20 runtime_log
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc   1587200 Jun  3 05:20 result.tar.gz
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc      8673 Jun  3 05:20 runtime_log.err
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc       656 Jun  3 05:20 gMDNDmuZMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPUVKDmbFmIKm.diag
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc      8192 Jun  3 05:34 boinc_mmap_file
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc        28 Jun  3 05:34 wrapper_checkpoint.txt
[2025-06-03 05:34:49] -rw-r--r--. 1 boinc boinc     20479 Jun  3 05:34 stderr.txt
[2025-06-03 05:34:49] HITS file was successfully produced:
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc 183540829 Jun  3 05:17 shared/HITS.pool.root.1
[2025-06-03 05:34:49]  *** Contents of shared directory: ***
[2025-06-03 05:34:49] total 389984
[2025-06-03 05:34:49] -rw-r--r--. 2 boinc boinc 213682062 Jun  3 01:29 ATLAS.root_0
[2025-06-03 05:34:49] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:29 start_atlas.sh
[2025-06-03 05:34:49] -rw-r--r--. 2 boinc boinc    508874 Jun  3 01:29 input.tar.gz
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc 183540829 Jun  3 05:17 HITS.pool.root.1
[2025-06-03 05:34:49] -rw-------. 1 boinc boinc   1587200 Jun  3 05:20 result.tar.gz
05:34:51 (23683): run_atlas exited; CPU time 48746.833176
05:34:51 (23683): called boinc_finish(0)

</stderr_txt>
]]>

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