Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:03:39 (16038): wrapper (7.7.26015): starting
02:03:39 (16038): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 02:03:39] Arguments: --nthreads 8
[2025-06-03 02:03:39] Threads: 8
[2025-06-03 02:03:39] Checking for CVMFS
[2025-06-03 02:03:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 02:03:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 02:03:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 02:03:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 02:03:42] 2.11.2.0 17879 31045 90232 146723 2 14 14154366 25165825 4635 130560 0 16369535 99.853 16713493 1994 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 02:03:42] CVMFS is ok
[2025-06-03 02:03:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 02:03:42] Checking for apptainer binary...
[2025-06-03 02:03:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 02:03:42] Running /usr/bin/apptainer --version
[2025-06-03 02:03:43] apptainer version 1.3.2-1.el7
[2025-06-03 02:03:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 02:03:58] cg-vwn476.simple-grid.lan
[2025-06-03 02:03:58] apptainer works
[2025-06-03 02:03:58] Set ATHENA_PROC_NUMBER=8
[2025-06-03 02:03:58] Set ATHENA_CORE_NUMBER=8
[2025-06-03 02:03:59] Starting ATLAS job with PandaID=6677390222
[2025-06-03 02:03:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 06:06:06]  *** The last 200 lines of the pilot log: ***
[2025-06-03 06:06:06] 2025-06-03 03:43:06,548 | INFO     | extracted standard info from prmon json
[2025-06-03 06:06:06] 2025-06-03 03:43:06,548 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 06:06:06] 2025-06-03 03:43:06,548 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 06:06:06] 2025-06-03 03:43:06,548 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 06:06:06] 2025-06-03 03:43:06,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 06:06:06] 2025-06-03 03:43:06,552 | INFO     | fitting pss+swap vs Time
[2025-06-03 06:06:06] 2025-06-03 03:43:06,553 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,554 | INFO     | sum of deviations: 10808240836.000008
[2025-06-03 06:06:06] 2025-06-03 03:43:06,554 | INFO     | mean x: 1748915912.0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,554 | INFO     | mean y: 2556177.206896552
[2025-06-03 06:06:06] 2025-06-03 03:43:06,554 | INFO     | -- intersect: -7284765551.438217
[2025-06-03 06:06:06] 2025-06-03 03:43:06,555 | INFO     | intersect: -7284765551.438217
[2025-06-03 06:06:06] 2025-06-03 03:43:06,555 | INFO     | chi2: 6.699967851486193
[2025-06-03 06:06:06] 2025-06-03 03:43:06,555 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 06:06:06] 2025-06-03 03:43:06,557 | INFO     | sum of deviations: 26558897299.000004
[2025-06-03 06:06:06] 2025-06-03 03:43:06,557 | INFO     | mean x: 1748915759.5
[2025-06-03 06:06:06] 2025-06-03 03:43:06,557 | INFO     | mean y: 2568805.8181818184
[2025-06-03 06:06:06] 2025-06-03 03:43:06,557 | INFO     | -- intersect: -19295596133.872066
[2025-06-03 06:06:06] 2025-06-03 03:43:06,557 | INFO     | intersect: -19295596133.872066
[2025-06-03 06:06:06] 2025-06-03 03:43:06,557 | INFO     | chi2: 5.9851136307588435
[2025-06-03 06:06:06] 2025-06-03 03:43:06,558 | INFO     | current chi2=5.9851136307588435 (change=10.669517176396296 %)
[2025-06-03 06:06:06] 2025-06-03 03:43:06,558 | INFO     | right removable region: 197
[2025-06-03 06:06:06] 2025-06-03 03:43:06,558 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 06:06:06] 2025-06-03 03:43:06,559 | INFO     | sum of deviations: -62096809493.5
[2025-06-03 06:06:06] 2025-06-03 03:43:06,559 | INFO     | mean x: 1748916064.5
[2025-06-03 06:06:06] 2025-06-03 03:43:06,560 | INFO     | mean y: 2615579.6616161615
[2025-06-03 06:06:06] 2025-06-03 03:43:06,560 | INFO     | -- intersect: 45123264503.01703
[2025-06-03 06:06:06] 2025-06-03 03:43:06,560 | INFO     | intersect: 45123264503.01703
[2025-06-03 06:06:06] 2025-06-03 03:43:06,560 | INFO     | chi2: 1.8945534917964628
[2025-06-03 06:06:06] 2025-06-03 03:43:06,560 | INFO     | current chi2=1.8945534917964628 (change=71.7229465306134 %)
[2025-06-03 06:06:06] 2025-06-03 03:43:06,560 | INFO     | sum of square deviations: 2229146912.0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,562 | INFO     | sum of deviations: -88250090190.00002
[2025-06-03 06:06:06] 2025-06-03 03:43:06,562 | INFO     | mean x: 1748916217.0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,562 | INFO     | mean y: 2637813.4663212434
[2025-06-03 06:06:06] 2025-06-03 03:43:06,562 | INFO     | -- intersect: 69240790334.57016
[2025-06-03 06:06:06] 2025-06-03 03:43:06,562 | INFO     | intersect: 69240790334.57016
[2025-06-03 06:06:06] 2025-06-03 03:43:06,563 | INFO     | chi2: 0.960853259979215
[2025-06-03 06:06:06] 2025-06-03 03:43:06,563 | INFO     | current chi2=0.960853259979215 (change=49.2833924119973 %)
[2025-06-03 06:06:06] 2025-06-03 03:43:06,563 | INFO     | sum of square deviations: 2060343747.0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,564 | INFO     | sum of deviations: -86355312154.99998
[2025-06-03 06:06:06] 2025-06-03 03:43:06,564 | INFO     | mean x: 1748916369.5
[2025-06-03 06:06:06] 2025-06-03 03:43:06,564 | INFO     | mean y: 2636094.1276595746
[2025-06-03 06:06:06] 2025-06-03 03:43:06,565 | INFO     | -- intersect: 73305073729.14323
[2025-06-03 06:06:06] 2025-06-03 03:43:06,565 | INFO     | intersect: 73305073729.14323
[2025-06-03 06:06:06] 2025-06-03 03:43:06,565 | INFO     | chi2: 0.9461309900150329
[2025-06-03 06:06:06] 2025-06-03 03:43:06,565 | INFO     | current chi2=0.9461309900150329 (change=1.532207942397011 %)
[2025-06-03 06:06:06] 2025-06-03 03:43:06,565 | INFO     | left removable region: 30
[2025-06-03 06:06:06] 2025-06-03 03:43:06,565 | INFO     | sum of square deviations: 1444149868.0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,566 | INFO     | sum of deviations: -60411439487.00001
[2025-06-03 06:06:06] 2025-06-03 03:43:06,567 | INFO     | mean x: 1748916644.0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,567 | INFO     | mean y: 2643930.0898203594
[2025-06-03 06:06:06] 2025-06-03 03:43:06,567 | INFO     | -- intersect: 73163037008.36078
[2025-06-03 06:06:06] 2025-06-03 03:43:06,567 | INFO     | intersect: 73163037008.36078
[2025-06-03 06:06:06] 2025-06-03 03:43:06,567 | INFO     | chi2: 0.13463520661015618
[2025-06-03 06:06:06] 2025-06-03 03:43:06,567 | INFO     | -- intersect: 73163037008.36078
[2025-06-03 06:06:06] 2025-06-03 03:43:06,567 | INFO     | current memory leak: -41.83 B/s (using 167 data points, chi2=0.13)
[2025-06-03 06:06:06] 2025-06-03 03:43:06,568 | INFO     | ..............................
[2025-06-03 06:06:06] 2025-06-03 03:43:06,568 | INFO     | . Timing measurements:
[2025-06-03 06:06:06] 2025-06-03 03:43:06,568 | INFO     | . get job = 0 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,568 | INFO     | . initial setup = 11 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,568 | INFO     | . payload setup = 176 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,568 | INFO     | . stage-in = 0 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,569 | INFO     | . payload execution = 12496 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,569 | INFO     | . stage-out = 2 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,569 | INFO     | . log creation = 1 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,569 | INFO     | ..............................
[2025-06-03 06:06:06] 2025-06-03 03:43:06,727 | INFO     | 
[2025-06-03 06:06:06] 2025-06-03 03:43:06,731 | INFO     | job summary report
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | --------------------------------------------------
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | PanDA job id: 6677390222
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | task id: 45006595
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | errors: (none)
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | pilot state: finished 
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | transexitcode: 0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | exeerrorcode: 0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | exeerrordiag: 
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | exitcode: 0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | exitmsg: OK
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | cpuconsumptiontime: 45206 s
[2025-06-03 06:06:06] 2025-06-03 03:43:06,732 | INFO     | nevents: 400
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | neventsw: 0
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | pid: 30342
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | pgrp: 30342
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | corecount: 8
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | event service: False
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | sizes: {0: 2405004, 1: 2405203, 11: 2405203, 22: 2405231, 33: 2405259, 44: 2405315, 54: 2405471, 65: 2405499, 76: 2405527, 86: 2405789, 87: 2405817, 12676: 2435301
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | --------------------------------------------------
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | 
[2025-06-03 06:06:06] 2025-06-03 03:43:06,733 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 06:06:06] 2025-06-03 03:43:07,221 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,221 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,221 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,221 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,221 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,221 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,221 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 06:06:06] 2025-06-03 03:43:07,222 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,223 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 06:06:06] 2025-06-03 03:43:07,223 | INFO     | job 6677390222 has completed (purged errors)
[2025-06-03 06:06:06] 2025-06-03 03:43:07,223 | INFO     | overall cleanup function is called
[2025-06-03 06:06:06] 2025-06-03 03:43:08,233 | INFO     | --- collectZombieJob: --- 10, [30342]
[2025-06-03 06:06:06] 2025-06-03 03:43:08,233 | INFO     | zombie collector waiting for pid 30342
[2025-06-03 06:06:06] 2025-06-03 03:43:08,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 06:06:06] 2025-06-03 03:43:08,234 | INFO     | collected zombie processes
[2025-06-03 06:06:06] 2025-06-03 03:43:08,234 | INFO     | will attempt to kill all subprocesses of pid=30342
[2025-06-03 06:06:06] 2025-06-03 03:43:08,345 | INFO     | process IDs to be killed: [30342] (in reverse order)
[2025-06-03 06:06:06] 2025-06-03 03:43:09,323 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 06:06:06] 2025-06-03 03:43:09,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 06:06:06] 2025-06-03 03:43:09,326 | INFO     | did not find any defunct processes belonging to 30342
[2025-06-03 06:06:06] 2025-06-03 03:43:09,330 | INFO     | did not find any defunct processes belonging to 30342
[2025-06-03 06:06:06] 2025-06-03 03:43:09,330 | INFO     | ready for new job
[2025-06-03 06:06:06] 2025-06-03 03:43:09,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 06:06:06] 2025-06-03 03:43:09,332 | INFO     | **************************************
[2025-06-03 06:06:06] 2025-06-03 03:43:09,337 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 06:06:06] 2025-06-03 03:43:09,337 | INFO     | **************************************
[2025-06-03 06:06:06] 2025-06-03 03:43:09,337 | INFO     | 
[2025-06-03 06:06:06] 2025-06-03 03:43:09,338 | INFO     | pilot is running in a VM
[2025-06-03 06:06:06] 2025-06-03 03:43:09,338 | INFO     | architecture information:
[2025-06-03 06:06:06] 2025-06-03 03:43:09,350 | INFO     | executing command: cat /etc/os-release
[2025-06-03 06:06:06] 2025-06-03 03:43:09,670 | INFO     | cat /etc/os-release:
[2025-06-03 06:06:06] NAME="CentOS Linux"
[2025-06-03 06:06:06] VERSION="7 (Core)"
[2025-06-03 06:06:06] ID="centos"
[2025-06-03 06:06:06] ID_LIKE="rhel fedora"
[2025-06-03 06:06:06] VERSION_ID="7"
[2025-06-03 06:06:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 06:06:06] ANSI_COLOR="0;31"
[2025-06-03 06:06:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 06:06:06] HOME_URL="https://www.centos.org/"
[2025-06-03 06:06:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 06:06:06] 
[2025-06-03 06:06:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 06:06:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 06:06:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 06:06:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 06:06:06] 
[2025-06-03 06:06:06] 2025-06-03 03:43:09,670 | INFO     | **************************************
[2025-06-03 06:06:06] 2025-06-03 03:43:10,173 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 06:06:06] 2025-06-03 03:43:10,346 | INFO     | sufficient remaining disk space (496848863232 B)
[2025-06-03 06:06:06] 2025-06-03 03:43:10,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 06:06:06] 2025-06-03 03:43:10,347 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 06:06:06] 2025-06-03 03:43:10,347 | INFO     | update_server=False
[2025-06-03 06:06:06] 2025-06-03 03:43:10,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 06:06:06] 2025-06-03 03:43:10,347 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 06:06:06] 2025-06-03 03:43:10,347 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 06:06:06] 2025-06-03 03:43:10,347 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 06:06:06] 2025-06-03 03:43:10,347 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 06:06:06] 2025-06-03 03:43:10,657 | INFO     | all job control threads have been joined
[2025-06-03 06:06:06] 2025-06-03 03:43:10,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 06:06:06] 2025-06-03 03:43:10,708 | INFO     | aborting loop
[2025-06-03 06:06:06] 2025-06-03 03:43:10,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 06:06:06] 2025-06-03 03:43:11,352 | INFO     | [job] retrieve thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:11,381 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:11,448 | INFO     | all data control threads have been joined
[2025-06-03 06:06:06] 2025-06-03 03:43:11,663 | INFO     | [job] control thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:11,679 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:11,713 | INFO     | [job] job monitor thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:11,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 06:06:06] 2025-06-03 03:43:11,760 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:11,778 | INFO     | all payload control threads have been joined
[2025-06-03 06:06:06] 2025-06-03 03:43:11,983 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 06:06:06] 2025-06-03 03:43:11,990 | INFO     | [payload] validate_post thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,203 | INFO     | [data] copytool_in thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,252 | INFO     | [job] validate thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,454 | INFO     | [data] control thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,473 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,747 | INFO     | [job] queue monitor thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,784 | INFO     | [payload] control thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,881 | INFO     | [payload] failed_post thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:12,988 | INFO     | [data] copytool_out thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:15,993 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 06:06:06] 2025-06-03 03:43:17,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325976840000)>', '<ExcThread(monitor, started 140325230208768)>']
[2025-06-03 06:06:06] 2025-06-03 03:43:17,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 06:06:06] 2025-06-03 03:43:17,388 | INFO     | [monitor] control thread has ended
[2025-06-03 06:06:06] 2025-06-03 03:43:22,361 | INFO     | all workflow threads have been joined
[2025-06-03 06:06:06] 2025-06-03 03:43:22,361 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 06:06:06] 2025-06-03 03:43:22,362 | INFO     | traces error code: 0
[2025-06-03 06:06:06] 2025-06-03 03:43:22,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 06:06:06] 2025-06-03 03:43:22,596 [wrapper] ==== pilot stdout END ====
[2025-06-03 06:06:06] 2025-06-03 03:43:22,725 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 06:06:06] 2025-06-03 03:43:22,772 [wrapper] pilotpid: 21723
[2025-06-03 06:06:06] 2025-06-03 03:43:22,865 [wrapper] Pilot exit status: 0
[2025-06-03 06:06:06] 2025-06-03 03:43:23,175 [wrapper] pandaids: 6677390222
[2025-06-03 06:06:06] 2025-06-03 03:43:23,621 [wrapper] cleanup supervisor_pilot 15547 21724
[2025-06-03 06:06:06] 2025-06-03 03:43:23,660 [wrapper] Test setup, not cleaning
[2025-06-03 06:06:06] 2025-06-03 03:43:23,701 [wrapper] apfmon messages muted
[2025-06-03 06:06:06] 2025-06-03 03:43:23,739 [wrapper] ==== wrapper stdout END ====
[2025-06-03 06:06:06] 2025-06-03 03:43:23,784 [wrapper] ==== wrapper stderr END ====
[2025-06-03 06:06:06]  *** Error codes and diagnostics ***
[2025-06-03 06:06:06]     "exeErrorCode": 0,
[2025-06-03 06:06:06]     "exeErrorDiag": "",
[2025-06-03 06:06:06]     "pilotErrorCode": 0,
[2025-06-03 06:06:06]     "pilotErrorDiag": "",
[2025-06-03 06:06:06]  *** Listing of results directory ***
[2025-06-03 06:06:06] total 394744
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:47 pilot3.tar.gz
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:57 queuedata.json
[2025-06-03 06:06:06] -rwx------. 1 boinc boinc     37140 Jun  2 19:58 runpilot2-wrapper.sh
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc       100 Jun  3 02:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 06:06:06] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 02:03 run_atlas
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc       105 Jun  3 02:03 job.xml
[2025-06-03 06:06:06] -rw-r--r--. 2 boinc boinc 214781659 Jun  3 02:03 EVNT.45006593._000262.pool.root.1
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc      6391 Jun  3 02:03 init_data.xml
[2025-06-03 06:06:06] -rw-r--r--. 2 boinc boinc     15093 Jun  3 02:03 start_atlas.sh
[2025-06-03 06:06:06] drwxrwx--x. 2 boinc boinc        68 Jun  3 02:03 shared
[2025-06-03 06:06:06] -rw-r--r--. 2 boinc boinc    508872 Jun  3 02:03 input.tar.gz
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc         0 Jun  3 02:03 boinc_lockfile
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc      2520 Jun  3 02:03 pandaJob.out
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc    988081 Jun  3 02:07 agis_schedconf.cvmfs.json
[2025-06-03 06:06:06] drwx------. 4 boinc boinc      4096 Jun  3 02:07 pilot3
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc 182663270 Jun  3 05:40 HITS.45006595._006529.pool.root.1
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:40 boinc_task_state.xml
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc      1020 Jun  3 05:41 memory_monitor_summary.json
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc   1603667 Jun  3 05:41 agis_ddmendpoints.agis.ALL.json
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc    362735 Jun  3 05:41 log.45006595._006529.job.log.tgz.1
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc        95 Jun  3 05:43 pilot_heartbeat.json
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc      7700 Jun  3 05:43 heartbeat.json
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc      4539 Jun  3 05:43 pilotlog.txt
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc   1113072 Jun  3 05:43 log.45006595._006529.job.log.1
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc       357 Jun  3 05:43 output.list
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:43 runtime_log
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc   1495040 Jun  3 05:43 result.tar.gz
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc      8659 Jun  3 05:43 runtime_log.err
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc       656 Jun  3 05:43 OQbKDm5bOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYsfKDm5ohrWm.diag
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc      8192 Jun  3 06:06 boinc_mmap_file
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc        28 Jun  3 06:06 wrapper_checkpoint.txt
[2025-06-03 06:06:06] -rw-r--r--. 1 boinc boinc     20515 Jun  3 06:06 stderr.txt
[2025-06-03 06:06:06] HITS file was successfully produced:
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc 182663270 Jun  3 05:40 shared/HITS.pool.root.1
[2025-06-03 06:06:06]  *** Contents of shared directory: ***
[2025-06-03 06:06:06] total 390108
[2025-06-03 06:06:06] -rw-r--r--. 2 boinc boinc 214781659 Jun  3 02:03 ATLAS.root_0
[2025-06-03 06:06:06] -rw-r--r--. 2 boinc boinc     15093 Jun  3 02:03 start_atlas.sh
[2025-06-03 06:06:06] -rw-r--r--. 2 boinc boinc    508872 Jun  3 02:03 input.tar.gz
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc 182663270 Jun  3 05:40 HITS.pool.root.1
[2025-06-03 06:06:06] -rw-------. 1 boinc boinc   1495040 Jun  3 05:43 result.tar.gz
06:06:08 (16038): run_atlas exited; CPU time 45370.766678
06:06:08 (16038): called boinc_finish(0)

</stderr_txt>
]]>

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