Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:03:27 (1349): wrapper (7.7.26015): starting
05:03:27 (1349): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 05:03:27] Arguments: --nthreads 8
[2025-06-03 05:03:27] Threads: 8
[2025-06-03 05:03:27] Checking for CVMFS
[2025-06-03 05:03:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 05:03:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 05:03:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 05:03:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 05:03:28] 2.11.2.0 408 31203 98456 146724 1 209 20653026 25165824 4050 130560 0 15400623 99.797 17500096 1940 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 05:03:28] CVMFS is ok
[2025-06-03 05:03:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 05:03:28] Checking for apptainer binary...
[2025-06-03 05:03:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 05:03:28] Running /usr/bin/apptainer --version
[2025-06-03 05:03:28] apptainer version 1.3.2-1.el7
[2025-06-03 05:03:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 05:03:30] cg-vwn429.simple-grid.lan
[2025-06-03 05:03:30] apptainer works
[2025-06-03 05:03:30] Set ATHENA_PROC_NUMBER=8
[2025-06-03 05:03:30] Set ATHENA_CORE_NUMBER=8
[2025-06-03 05:03:30] Starting ATLAS job with PandaID=6677380340
[2025-06-03 05:03:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 08:34:16]  *** The last 200 lines of the pilot log: ***
[2025-06-03 08:34:16] 2025-06-03 06:33:56,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 08:34:16] 2025-06-03 06:33:56,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 08:34:16] 2025-06-03 06:33:56,204 | INFO     | fitting pss+swap vs Time
[2025-06-03 08:34:16] 2025-06-03 06:33:56,205 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 08:34:16] 2025-06-03 06:33:56,207 | INFO     | sum of deviations: -36877698900.99999
[2025-06-03 08:34:16] 2025-06-03 06:33:56,207 | INFO     | mean x: 1748926140.5
[2025-06-03 08:34:16] 2025-06-03 06:33:56,207 | INFO     | mean y: 2523509.0873786407
[2025-06-03 08:34:16] 2025-06-03 06:33:56,207 | INFO     | -- intersect: 23796412563.69171
[2025-06-03 08:34:16] 2025-06-03 06:33:56,207 | INFO     | intersect: 23796412563.69171
[2025-06-03 08:34:16] 2025-06-03 06:33:56,208 | INFO     | chi2: 2.843691253046643
[2025-06-03 08:34:16] 2025-06-03 06:33:56,208 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,210 | INFO     | sum of deviations: -21722700789.000015
[2025-06-03 08:34:16] 2025-06-03 06:33:56,210 | INFO     | mean x: 1748925988.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,210 | INFO     | mean y: 2535296.4278606963
[2025-06-03 08:34:16] 2025-06-03 06:33:56,210 | INFO     | -- intersect: 15090456415.524542
[2025-06-03 08:34:16] 2025-06-03 06:33:56,210 | INFO     | intersect: 15090456415.524542
[2025-06-03 08:34:16] 2025-06-03 06:33:56,210 | INFO     | chi2: 2.080052826662465
[2025-06-03 08:34:16] 2025-06-03 06:33:56,211 | INFO     | current chi2=2.080052826662465 (change=26.85377414183201 %)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,211 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,212 | INFO     | sum of deviations: -20365823681.99999
[2025-06-03 08:34:16] 2025-06-03 06:33:56,213 | INFO     | mean x: 1748925835.5
[2025-06-03 08:34:16] 2025-06-03 06:33:56,213 | INFO     | mean y: 2536425.326530612
[2025-06-03 08:34:16] 2025-06-03 06:33:56,213 | INFO     | -- intersect: 15258443684.283222
[2025-06-03 08:34:16] 2025-06-03 06:33:56,213 | INFO     | intersect: 15258443684.283222
[2025-06-03 08:34:16] 2025-06-03 06:33:56,213 | INFO     | chi2: 2.0794401320467344
[2025-06-03 08:34:16] 2025-06-03 06:33:56,213 | INFO     | current chi2=2.0794401320467344 (change=0.02945572381032466 %)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,213 | INFO     | right removable region: 195
[2025-06-03 08:34:16] 2025-06-03 06:33:56,214 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,215 | INFO     | sum of deviations: -76370842769.00002
[2025-06-03 08:34:16] 2025-06-03 06:33:56,215 | INFO     | mean x: 1748926293.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,216 | INFO     | mean y: 2554518.925373134
[2025-06-03 08:34:16] 2025-06-03 06:33:56,216 | INFO     | -- intersect: 53047406705.53242
[2025-06-03 08:34:16] 2025-06-03 06:33:56,216 | INFO     | intersect: 53047406705.53242
[2025-06-03 08:34:16] 2025-06-03 06:33:56,216 | INFO     | chi2: 0.9871933974126236
[2025-06-03 08:34:16] 2025-06-03 06:33:56,216 | INFO     | current chi2=0.9871933974126236 (change=65.28478974800885 %)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,217 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,218 | INFO     | sum of deviations: -74470197357.49998
[2025-06-03 08:34:16] 2025-06-03 06:33:56,218 | INFO     | mean x: 1748926445.5
[2025-06-03 08:34:16] 2025-06-03 06:33:56,218 | INFO     | mean y: 2552900.2193877553
[2025-06-03 08:34:16] 2025-06-03 06:33:56,218 | INFO     | -- intersect: 55787717224.56811
[2025-06-03 08:34:16] 2025-06-03 06:33:56,218 | INFO     | intersect: 55787717224.56811
[2025-06-03 08:34:16] 2025-06-03 06:33:56,219 | INFO     | chi2: 0.9721084890216539
[2025-06-03 08:34:16] 2025-06-03 06:33:56,219 | INFO     | current chi2=0.9721084890216539 (change=1.528060097495214 %)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,219 | INFO     | left removable region: 20
[2025-06-03 08:34:16] 2025-06-03 06:33:56,219 | INFO     | sum of square deviations: 1661798600.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,221 | INFO     | sum of deviations: -47045162552.999985
[2025-06-03 08:34:16] 2025-06-03 06:33:56,221 | INFO     | mean x: 1748926415.0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,221 | INFO     | mean y: 2558862.834285714
[2025-06-03 08:34:16] 2025-06-03 06:33:56,221 | INFO     | -- intersect: 49514291203.26983
[2025-06-03 08:34:16] 2025-06-03 06:33:56,221 | INFO     | intersect: 49514291203.26983
[2025-06-03 08:34:16] 2025-06-03 06:33:56,221 | INFO     | chi2: 0.168041820813805
[2025-06-03 08:34:16] 2025-06-03 06:33:56,222 | INFO     | -- intersect: 49514291203.26983
[2025-06-03 08:34:16] 2025-06-03 06:33:56,222 | INFO     | current memory leak: -28.31 B/s (using 175 data points, chi2=0.17)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | ..............................
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . Timing measurements:
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . get job = 0 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . initial setup = 2 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . payload setup = 13 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . stage-in = 0 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . payload execution = 12550 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . stage-out = 1 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,223 | INFO     | . log creation = 0 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,224 | INFO     | ..............................
[2025-06-03 08:34:16] 2025-06-03 06:33:56,407 | INFO     | 
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | job summary report
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | --------------------------------------------------
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | PanDA job id: 6677380340
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | task id: 45006595
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | errors: (none)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | pilot state: finished 
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | transexitcode: 0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | exeerrorcode: 0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | exeerrordiag: 
[2025-06-03 08:34:16] 2025-06-03 06:33:56,408 | INFO     | exitcode: 0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | exitmsg: OK
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | cpuconsumptiontime: 48020 s
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | nevents: 400
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | neventsw: 0
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | pid: 13582
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | pgrp: 13582
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | corecount: 8
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | event service: False
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | sizes: {0: 2405006, 1: 2405205, 10: 2405411, 12: 2405439, 12568: 2434527, 12570: 2443470, 12572: 2443654, 12585: 2443824}
[2025-06-03 08:34:16] 2025-06-03 06:33:56,409 | INFO     | --------------------------------------------------
[2025-06-03 08:34:16] 2025-06-03 06:33:56,410 | INFO     | 
[2025-06-03 08:34:16] 2025-06-03 06:33:56,410 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-03 08:34:16] 2025-06-03 06:33:56,476 | INFO     | PID=5724 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 08:34:16] 2025-06-03 06:33:56,477 | INFO     | .. there are 9 such processes running
[2025-06-03 08:34:16] 2025-06-03 06:33:56,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | job 6677380340 has completed (purged errors)
[2025-06-03 08:34:16] 2025-06-03 06:33:56,505 | INFO     | overall cleanup function is called
[2025-06-03 08:34:16] 2025-06-03 06:33:57,513 | INFO     | --- collectZombieJob: --- 10, [13582]
[2025-06-03 08:34:16] 2025-06-03 06:33:57,513 | INFO     | zombie collector waiting for pid 13582
[2025-06-03 08:34:16] 2025-06-03 06:33:57,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 08:34:16] 2025-06-03 06:33:57,514 | INFO     | collected zombie processes
[2025-06-03 08:34:16] 2025-06-03 06:33:57,514 | INFO     | will attempt to kill all subprocesses of pid=13582
[2025-06-03 08:34:16] 2025-06-03 06:33:57,604 | INFO     | process IDs to be killed: [13582] (in reverse order)
[2025-06-03 08:34:16] 2025-06-03 06:33:57,683 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 08:34:16] 2025-06-03 06:33:57,683 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 08:34:16] 2025-06-03 06:33:57,686 | INFO     | did not find any defunct processes belonging to 13582
[2025-06-03 08:34:16] 2025-06-03 06:33:57,690 | INFO     | did not find any defunct processes belonging to 13582
[2025-06-03 08:34:16] 2025-06-03 06:33:57,691 | INFO     | ready for new job
[2025-06-03 08:34:16] 2025-06-03 06:33:57,691 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 08:34:16] 2025-06-03 06:33:57,693 | INFO     | **************************************
[2025-06-03 08:34:16] 2025-06-03 06:33:57,693 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 08:34:16] 2025-06-03 06:33:57,693 | INFO     | **************************************
[2025-06-03 08:34:16] 2025-06-03 06:33:57,693 | INFO     | 
[2025-06-03 08:34:16] 2025-06-03 06:33:57,694 | INFO     | pilot is running in a VM
[2025-06-03 08:34:16] 2025-06-03 06:33:57,694 | INFO     | architecture information:
[2025-06-03 08:34:16] 2025-06-03 06:33:57,694 | INFO     | executing command: cat /etc/os-release
[2025-06-03 08:34:16] 2025-06-03 06:33:57,726 | INFO     | cat /etc/os-release:
[2025-06-03 08:34:16] NAME="CentOS Linux"
[2025-06-03 08:34:16] VERSION="7 (Core)"
[2025-06-03 08:34:16] ID="centos"
[2025-06-03 08:34:16] ID_LIKE="rhel fedora"
[2025-06-03 08:34:16] VERSION_ID="7"
[2025-06-03 08:34:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 08:34:16] ANSI_COLOR="0;31"
[2025-06-03 08:34:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 08:34:16] HOME_URL="https://www.centos.org/"
[2025-06-03 08:34:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 08:34:16] 
[2025-06-03 08:34:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 08:34:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 08:34:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 08:34:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 08:34:16] 
[2025-06-03 08:34:16] 2025-06-03 06:33:57,726 | INFO     | **************************************
[2025-06-03 08:34:16] 2025-06-03 06:33:58,229 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-03 08:34:16] 2025-06-03 06:33:58,234 [wrapper] supervise_pilot (15 min periods counter: 15)
[2025-06-03 08:34:16] 2025-06-03 06:33:58,286 | INFO     | sufficient remaining disk space (496903389184 B)
[2025-06-03 08:34:16] 2025-06-03 06:33:58,287 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 08:34:16] 2025-06-03 06:33:58,287 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 08:34:16] 2025-06-03 06:33:58,287 | INFO     | update_server=False
[2025-06-03 08:34:16] 2025-06-03 06:33:58,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 08:34:16] 2025-06-03 06:33:58,288 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:34:16] 2025-06-03 06:33:58,333 | INFO     | all data control threads have been joined
[2025-06-03 08:34:16] 2025-06-03 06:33:58,483 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 08:34:16] 2025-06-03 06:33:58,484 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 08:34:16] 2025-06-03 06:33:58,484 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 08:34:16] 2025-06-03 06:33:58,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 08:34:16] 2025-06-03 06:33:59,257 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:34:16] 2025-06-03 06:33:59,258 | INFO     | aborting loop
[2025-06-03 08:34:16] 2025-06-03 06:33:59,291 | INFO     | [job] retrieve thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,292 | INFO     | [job] queue monitor thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,337 | INFO     | [data] control thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,534 | INFO     | [payload] failed_post thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,614 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 08:34:16] 2025-06-03 06:33:59,676 | INFO     | [payload] validate_post thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,731 | INFO     | [data] copytool_in thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,732 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,745 | INFO     | [job] validate thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:33:59,762 | INFO     | all payload control threads have been joined
[2025-06-03 08:34:16] 2025-06-03 06:33:59,847 | INFO     | all job control threads have been joined
[2025-06-03 08:34:16] 2025-06-03 06:34:00,101 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:00,116 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:00,263 | INFO     | [job] job monitor thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:00,765 | INFO     | [payload] control thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:00,852 | INFO     | [job] control thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:01,622 | INFO     | [data] copytool_out thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:02,894 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:09,246 | INFO     | job.realtimelogging is not enabled
[2025-06-03 08:34:16] 2025-06-03 06:34:10,252 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 08:34:16] 2025-06-03 06:34:10,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695317194560)>', '<ExcThread(monitor, started 139694725646080)>']
[2025-06-03 08:34:16] 2025-06-03 06:34:11,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 08:34:16] 2025-06-03 06:34:11,590 | INFO     | [monitor] control thread has ended
[2025-06-03 08:34:16] 2025-06-03 06:34:15,923 | INFO     | all workflow threads have been joined
[2025-06-03 08:34:16] 2025-06-03 06:34:15,923 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 08:34:16] 2025-06-03 06:34:15,924 | INFO     | traces error code: 0
[2025-06-03 08:34:16] 2025-06-03 06:34:15,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 08:34:16] 2025-06-03 06:34:16,166 [wrapper] ==== pilot stdout END ====
[2025-06-03 08:34:16] 2025-06-03 06:34:16,176 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 08:34:16] 2025-06-03 06:34:16,187 [wrapper] pilotpid: 5724
[2025-06-03 08:34:16] 2025-06-03 06:34:16,196 [wrapper] Pilot exit status: 0
[2025-06-03 08:34:16] 2025-06-03 06:34:16,230 [wrapper] pandaids: 6677380340
[2025-06-03 08:34:16] 2025-06-03 06:34:16,271 [wrapper] cleanup supervisor_pilot   730 5725
[2025-06-03 08:34:16] 2025-06-03 06:34:16,281 [wrapper] Test setup, not cleaning
[2025-06-03 08:34:16] 2025-06-03 06:34:16,284 [wrapper] apfmon messages muted
[2025-06-03 08:34:16] 2025-06-03 06:34:16,287 [wrapper] ==== wrapper stdout END ====
[2025-06-03 08:34:16] 2025-06-03 06:34:16,290 [wrapper] ==== wrapper stderr END ====
[2025-06-03 08:34:16]  *** Error codes and diagnostics ***
[2025-06-03 08:34:16]     "exeErrorCode": 0,
[2025-06-03 08:34:16]     "exeErrorDiag": "",
[2025-06-03 08:34:16]     "pilotErrorCode": 0,
[2025-06-03 08:34:16]     "pilotErrorDiag": "",
[2025-06-03 08:34:16]  *** Listing of results directory ***
[2025-06-03 08:34:16] total 385596
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 08:34:16] -rwx------. 1 boinc boinc     37140 Jun  2 17:51 runpilot2-wrapper.sh
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:53 queuedata.json
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc       100 Jun  3 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 08:34:16] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 05:03 run_atlas
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc       105 Jun  3 05:03 job.xml
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc      6393 Jun  3 05:03 init_data.xml
[2025-06-03 08:34:16] -rw-r--r--. 2 boinc boinc 215157972 Jun  3 05:03 EVNT.45006593._000084.pool.root.1
[2025-06-03 08:34:16] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:03 start_atlas.sh
[2025-06-03 08:34:16] drwxrwx--x. 2 boinc boinc        68 Jun  3 05:03 shared
[2025-06-03 08:34:16] -rw-r--r--. 2 boinc boinc    508874 Jun  3 05:03 input.tar.gz
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc         0 Jun  3 05:03 boinc_lockfile
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc      2521 Jun  3 05:03 pandaJob.out
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc    988073 Jun  3 05:03 agis_schedconf.cvmfs.json
[2025-06-03 08:34:16] drwx------. 4 boinc boinc      4096 Jun  3 05:03 pilot3
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc 172961158 Jun  3 08:32 HITS.45006595._002081.pool.root.1
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc       531 Jun  3 08:33 boinc_task_state.xml
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc      1016 Jun  3 08:33 memory_monitor_summary.json
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc   1603667 Jun  3 08:33 agis_ddmendpoints.agis.ALL.json
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc    362152 Jun  3 08:33 log.45006595._002081.job.log.tgz.1
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc      8192 Jun  3 08:33 boinc_mmap_file
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc        28 Jun  3 08:33 wrapper_checkpoint.txt
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc        95 Jun  3 08:33 pilot_heartbeat.json
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc      7688 Jun  3 08:33 heartbeat.json
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc      4489 Jun  3 08:34 pilotlog.txt
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc   1091518 Jun  3 08:34 log.45006595._002081.job.log.1
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc       357 Jun  3 08:34 output.list
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc       620 Jun  3 08:34 runtime_log
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc   1474560 Jun  3 08:34 result.tar.gz
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc      8673 Jun  3 08:34 runtime_log.err
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc       656 Jun  3 08:34 9d2LDmscMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm2eVKDm3Qtbun.diag
[2025-06-03 08:34:16] -rw-r--r--. 1 boinc boinc     20536 Jun  3 08:34 stderr.txt
[2025-06-03 08:34:16] HITS file was successfully produced:
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc 172961158 Jun  3 08:32 shared/HITS.pool.root.1
[2025-06-03 08:34:16]  *** Contents of shared directory: ***
[2025-06-03 08:34:16] total 380980
[2025-06-03 08:34:16] -rw-r--r--. 2 boinc boinc 215157972 Jun  3 05:03 ATLAS.root_0
[2025-06-03 08:34:16] -rw-r--r--. 2 boinc boinc     15093 Jun  3 05:03 start_atlas.sh
[2025-06-03 08:34:16] -rw-r--r--. 2 boinc boinc    508874 Jun  3 05:03 input.tar.gz
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc 172961158 Jun  3 08:32 HITS.pool.root.1
[2025-06-03 08:34:16] -rw-------. 1 boinc boinc   1474560 Jun  3 08:34 result.tar.gz
08:34:18 (1349): run_atlas exited; CPU time 48179.138087
08:34:18 (1349): called boinc_finish(0)

</stderr_txt>
]]>

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