Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:56:26 (17697): wrapper (7.7.26015): starting
20:56:26 (17697): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 20:56:26] Arguments: --nthreads 8
[2025-06-02 20:56:26] Threads: 8
[2025-06-02 20:56:26] Checking for CVMFS
[2025-06-02 20:56:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 20:56:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 20:56:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 20:56:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 20:56:28] 2.11.2.0 5632 30710 94976 146716 3 77 14389779 25165824 4209 130560 0 15308286 99.816 17675539 2059 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 20:56:28] CVMFS is ok
[2025-06-02 20:56:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 20:56:28] Checking for apptainer binary...
[2025-06-02 20:56:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 20:56:28] Running /usr/bin/apptainer --version
[2025-06-02 20:56:29] apptainer version 1.3.2-1.el7
[2025-06-02 20:56:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 20:56:30] cg-vwn252.simple-grid.lan
[2025-06-02 20:56:30] apptainer works
[2025-06-02 20:56:30] Set ATHENA_PROC_NUMBER=8
[2025-06-02 20:56:30] Set ATHENA_CORE_NUMBER=8
[2025-06-02 20:56:30] Starting ATLAS job with PandaID=6677382403
[2025-06-02 20:56:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 00:55:18]  *** The last 200 lines of the pilot log: ***
[2025-06-03 00:55:18] 2025-06-02 22:35:40,315 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 00:55:18] 2025-06-02 22:35:40,315 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 00:55:18] 2025-06-02 22:35:40,315 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 00:55:18] 2025-06-02 22:35:40,315 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 00:55:18] 2025-06-02 22:35:40,320 | INFO     | fitting pss+swap vs Time
[2025-06-03 00:55:18] 2025-06-02 22:35:40,321 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,323 | INFO     | sum of deviations: 15185049396.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,331 | INFO     | mean x: 1748897178.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,331 | INFO     | mean y: 2465390.244131455
[2025-06-03 00:55:18] 2025-06-02 22:35:40,331 | INFO     | -- intersect: -8860372878.796904
[2025-06-03 00:55:18] 2025-06-02 22:35:40,331 | INFO     | intersect: -8860372878.796904
[2025-06-03 00:55:18] 2025-06-02 22:35:40,331 | INFO     | chi2: 2.566609527257483
[2025-06-03 00:55:18] 2025-06-02 22:35:40,332 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,333 | INFO     | sum of deviations: 28572781585.500004
[2025-06-03 00:55:18] 2025-06-02 22:35:40,334 | INFO     | mean x: 1748897025.5
[2025-06-03 00:55:18] 2025-06-02 22:35:40,334 | INFO     | mean y: 2475098.9951923075
[2025-06-03 00:55:18] 2025-06-02 22:35:40,334 | INFO     | -- intersect: -17905990211.147022
[2025-06-03 00:55:18] 2025-06-02 22:35:40,334 | INFO     | intersect: -17905990211.147022
[2025-06-03 00:55:18] 2025-06-02 22:35:40,334 | INFO     | chi2: 1.7982165171325233
[2025-06-03 00:55:18] 2025-06-02 22:35:40,334 | INFO     | current chi2=1.7982165171325233 (change=29.93805648909969 %)
[2025-06-03 00:55:18] 2025-06-02 22:35:40,335 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,336 | INFO     | sum of deviations: 27793312452.999996
[2025-06-03 00:55:18] 2025-06-02 22:35:40,336 | INFO     | mean x: 1748896873.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,336 | INFO     | mean y: 2474493.738916256
[2025-06-03 00:55:18] 2025-06-02 22:35:40,337 | INFO     | -- intersect: -18736616164.083664
[2025-06-03 00:55:18] 2025-06-02 22:35:40,337 | INFO     | intersect: -18736616164.083664
[2025-06-03 00:55:18] 2025-06-02 22:35:40,337 | INFO     | chi2: 1.7995917520783296
[2025-06-03 00:55:18] 2025-06-02 22:35:40,337 | INFO     | current chi2=1.7995917520783296 (change=-0.07647771737739625 %)
[2025-06-03 00:55:18] 2025-06-02 22:35:40,337 | INFO     | right removable region: 202
[2025-06-03 00:55:18] 2025-06-02 22:35:40,338 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,339 | INFO     | sum of deviations: -22880353207.5
[2025-06-03 00:55:18] 2025-06-02 22:35:40,339 | INFO     | mean x: 1748897330.5
[2025-06-03 00:55:18] 2025-06-02 22:35:40,340 | INFO     | mean y: 2493313.1298076925
[2025-06-03 00:55:18] 2025-06-02 22:35:40,340 | INFO     | -- intersect: 14343137115.454422
[2025-06-03 00:55:18] 2025-06-02 22:35:40,340 | INFO     | intersect: 14343137115.454422
[2025-06-03 00:55:18] 2025-06-02 22:35:40,340 | INFO     | chi2: 0.8824039697204955
[2025-06-03 00:55:18] 2025-06-02 22:35:40,340 | INFO     | current chi2=0.8824039697204955 (change=65.61985918195447 %)
[2025-06-03 00:55:18] 2025-06-02 22:35:40,341 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,351 | INFO     | sum of deviations: -20600772807.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,352 | INFO     | mean x: 1748897483.0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,352 | INFO     | mean y: 2491502.0049261083
[2025-06-03 00:55:18] 2025-06-02 22:35:40,352 | INFO     | -- intersect: 13892159549.010714
[2025-06-03 00:55:18] 2025-06-02 22:35:40,352 | INFO     | intersect: 13892159549.010714
[2025-06-03 00:55:18] 2025-06-02 22:35:40,352 | INFO     | chi2: 0.8684151251026923
[2025-06-03 00:55:18] 2025-06-02 22:35:40,352 | INFO     | current chi2=0.8684151251026923 (change=1.585310707774158 %)
[2025-06-03 00:55:18] 2025-06-02 22:35:40,353 | INFO     | left removable region: 20
[2025-06-03 00:55:18] 2025-06-02 22:35:40,353 | INFO     | sum of square deviations: 1869302025.5
[2025-06-03 00:55:18] 2025-06-02 22:35:40,354 | INFO     | sum of deviations: 3911000970.0000005
[2025-06-03 00:55:18] 2025-06-02 22:35:40,354 | INFO     | mean x: 1748897452.5
[2025-06-03 00:55:18] 2025-06-02 22:35:40,354 | INFO     | mean y: 2492398.8791208793
[2025-06-03 00:55:18] 2025-06-02 22:35:40,355 | INFO     | -- intersect: -3656595078.6131725
[2025-06-03 00:55:18] 2025-06-02 22:35:40,355 | INFO     | intersect: -3656595078.6131725
[2025-06-03 00:55:18] 2025-06-02 22:35:40,355 | INFO     | chi2: 0.0006643206997380539
[2025-06-03 00:55:18] 2025-06-02 22:35:40,355 | INFO     | -- intersect: -3656595078.6131725
[2025-06-03 00:55:18] 2025-06-02 22:35:40,355 | INFO     | current memory leak: 2.09 B/s (using 182 data points, chi2=0.00)
[2025-06-03 00:55:18] 2025-06-02 22:35:40,356 | INFO     | ..............................
[2025-06-03 00:55:18] 2025-06-02 22:35:40,356 | INFO     | . Timing measurements:
[2025-06-03 00:55:18] 2025-06-02 22:35:40,356 | INFO     | . get job = 0 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,356 | INFO     | . initial setup = 2 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,356 | INFO     | . payload setup = 14 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,357 | INFO     | . stage-in = 0 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,357 | INFO     | . payload execution = 12985 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,357 | INFO     | . stage-out = 4 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,357 | INFO     | . log creation = 1 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,357 | INFO     | ..............................
[2025-06-03 00:55:18] 2025-06-02 22:35:40,542 | INFO     | 
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | job summary report
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | --------------------------------------------------
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | PanDA job id: 6677382403
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | task id: 45006595
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | errors: (none)
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | pilot state: finished 
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | transexitcode: 0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,543 | INFO     | exeerrorcode: 0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | exeerrordiag: 
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | exitcode: 0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | exitmsg: OK
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | cpuconsumptiontime: 48359 s
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | nevents: 400
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | neventsw: 0
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | pid: 32293
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | pgrp: 32293
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | corecount: 8
[2025-06-03 00:55:18] 2025-06-02 22:35:40,544 | INFO     | event service: False
[2025-06-03 00:55:18] 2025-06-02 22:35:40,545 | INFO     | sizes: {0: 2405006, 1: 2405205, 9: 2405411, 12: 2405439, 13004: 2434726, 13010: 2443853, 13093: 2443967}
[2025-06-03 00:55:18] 2025-06-02 22:35:40,545 | INFO     | --------------------------------------------------
[2025-06-03 00:55:18] 2025-06-02 22:35:40,545 | INFO     | 
[2025-06-03 00:55:18] 2025-06-02 22:35:40,545 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-03 00:55:18] 2025-06-02 22:35:41,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 00:55:18] 2025-06-02 22:35:41,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 00:55:18] 2025-06-02 22:35:41,004 | INFO     | job 6677382403 has completed (purged errors)
[2025-06-03 00:55:18] 2025-06-02 22:35:41,004 | INFO     | overall cleanup function is called
[2025-06-03 00:55:18] 2025-06-02 22:35:42,013 | INFO     | --- collectZombieJob: --- 10, [32293]
[2025-06-03 00:55:18] 2025-06-02 22:35:42,014 | INFO     | zombie collector waiting for pid 32293
[2025-06-03 00:55:18] 2025-06-02 22:35:42,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 00:55:18] 2025-06-02 22:35:42,014 | INFO     | collected zombie processes
[2025-06-03 00:55:18] 2025-06-02 22:35:42,014 | INFO     | will attempt to kill all subprocesses of pid=32293
[2025-06-03 00:55:18] 2025-06-02 22:35:42,155 | INFO     | process IDs to be killed: [32293] (in reverse order)
[2025-06-03 00:55:18] 2025-06-02 22:35:42,253 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 00:55:18] 2025-06-02 22:35:42,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 00:55:18] 2025-06-02 22:35:42,257 | INFO     | did not find any defunct processes belonging to 32293
[2025-06-03 00:55:18] 2025-06-02 22:35:42,260 | INFO     | did not find any defunct processes belonging to 32293
[2025-06-03 00:55:18] 2025-06-02 22:35:42,261 | INFO     | ready for new job
[2025-06-03 00:55:18] 2025-06-02 22:35:42,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 00:55:18] 2025-06-02 22:35:42,263 | INFO     | **************************************
[2025-06-03 00:55:18] 2025-06-02 22:35:42,263 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 00:55:18] 2025-06-02 22:35:42,264 | INFO     | **************************************
[2025-06-03 00:55:18] 2025-06-02 22:35:42,264 | INFO     | 
[2025-06-03 00:55:18] 2025-06-02 22:35:42,265 | INFO     | pilot is running in a VM
[2025-06-03 00:55:18] 2025-06-02 22:35:42,265 | INFO     | architecture information:
[2025-06-03 00:55:18] 2025-06-02 22:35:42,265 | INFO     | executing command: cat /etc/os-release
[2025-06-03 00:55:18] 2025-06-02 22:35:42,326 | INFO     | cat /etc/os-release:
[2025-06-03 00:55:18] NAME="CentOS Linux"
[2025-06-03 00:55:18] VERSION="7 (Core)"
[2025-06-03 00:55:18] ID="centos"
[2025-06-03 00:55:18] ID_LIKE="rhel fedora"
[2025-06-03 00:55:18] VERSION_ID="7"
[2025-06-03 00:55:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 00:55:18] ANSI_COLOR="0;31"
[2025-06-03 00:55:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 00:55:18] HOME_URL="https://www.centos.org/"
[2025-06-03 00:55:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 00:55:18] 
[2025-06-03 00:55:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 00:55:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 00:55:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 00:55:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 00:55:18] 
[2025-06-03 00:55:18] 2025-06-02 22:35:42,326 | INFO     | **************************************
[2025-06-03 00:55:18] 2025-06-02 22:35:42,830 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-03 00:55:18] 2025-06-02 22:35:43,000 | INFO     | sufficient remaining disk space (496950575104 B)
[2025-06-03 00:55:18] 2025-06-02 22:35:43,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 00:55:18] 2025-06-02 22:35:43,001 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 00:55:18] 2025-06-02 22:35:43,001 | INFO     | update_server=False
[2025-06-03 00:55:18] 2025-06-02 22:35:43,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 00:55:18] 2025-06-02 22:35:43,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 00:55:18] 2025-06-02 22:35:43,023 | INFO     | all job control threads have been joined
[2025-06-03 00:55:18] 2025-06-02 22:35:43,304 | INFO     | all data control threads have been joined
[2025-06-03 00:55:18] 2025-06-02 22:35:43,502 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 00:55:18] 2025-06-02 22:35:43,503 | INFO     | aborting loop
[2025-06-03 00:55:18] 2025-06-02 22:35:43,623 | INFO     | PID=21704 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 00:55:18] 2025-06-02 22:35:43,623 | INFO     | .. there are 9 such processes running
[2025-06-03 00:55:18] 2025-06-02 22:35:43,623 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 00:55:18] 2025-06-02 22:35:43,623 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 00:55:18] 2025-06-02 22:35:43,623 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 00:55:18] 2025-06-02 22:35:43,912 | INFO     | all payload control threads have been joined
[2025-06-03 00:55:18] 2025-06-02 22:35:44,006 | INFO     | [job] retrieve thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,030 | INFO     | [job] control thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 00:55:18] 2025-06-02 22:35:44,068 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,117 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,132 | INFO     | [payload] failed_post thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,147 | INFO     | [payload] validate_post thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,310 | INFO     | [data] control thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,509 | INFO     | [job] job monitor thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,851 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:44,918 | INFO     | [payload] control thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:45,008 | INFO     | [data] copytool_out thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:45,039 | INFO     | [data] copytool_in thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:45,088 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:45,449 | INFO     | [job] validate thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:45,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 00:55:18] 2025-06-02 22:35:46,561 | INFO     | [job] queue monitor thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:48,049 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 00:55:18] 2025-06-02 22:35:49,643 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466730518336)>', '<ExcThread(monitor, started 140466142037760)>']
[2025-06-03 00:55:18] 2025-06-02 22:35:49,659 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 00:55:18] 2025-06-02 22:35:49,660 | INFO     | [monitor] control thread has ended
[2025-06-03 00:55:18] 2025-06-02 22:35:54,668 | INFO     | all workflow threads have been joined
[2025-06-03 00:55:18] 2025-06-02 22:35:54,669 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 00:55:18] 2025-06-02 22:35:54,669 | INFO     | traces error code: 0
[2025-06-03 00:55:18] 2025-06-02 22:35:54,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 00:55:18] 2025-06-02 22:35:54,990 [wrapper] ==== pilot stdout END ====
[2025-06-03 00:55:18] 2025-06-02 22:35:55,102 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 00:55:18] 2025-06-02 22:35:55,206 [wrapper] pilotpid: 21704
[2025-06-03 00:55:18] 2025-06-02 22:35:55,290 [wrapper] Pilot exit status: 0
[2025-06-03 00:55:18] 2025-06-02 22:35:55,579 [wrapper] pandaids: 6677382403
[2025-06-03 00:55:18] 2025-06-02 22:35:56,170 [wrapper] cleanup supervisor_pilot 25232 21705
[2025-06-03 00:55:18] 2025-06-02 22:35:56,259 [wrapper] Test setup, not cleaning
[2025-06-03 00:55:18] 2025-06-02 22:35:56,386 [wrapper] apfmon messages muted
[2025-06-03 00:55:18] 2025-06-02 22:35:56,520 [wrapper] ==== wrapper stdout END ====
[2025-06-03 00:55:18] 2025-06-02 22:35:56,633 [wrapper] ==== wrapper stderr END ====
[2025-06-03 00:55:18]  *** Error codes and diagnostics ***
[2025-06-03 00:55:18]     "exeErrorCode": 0,
[2025-06-03 00:55:18]     "exeErrorDiag": "",
[2025-06-03 00:55:18]     "pilotErrorCode": 0,
[2025-06-03 00:55:18]     "pilotErrorDiag": "",
[2025-06-03 00:55:18]  *** Listing of results directory ***
[2025-06-03 00:55:18] total 391340
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:59 pilot3.tar.gz
[2025-06-03 00:55:18] -rwx------. 1 boinc boinc     37140 Jun  2 18:04 runpilot2-wrapper.sh
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc      5111 Jun  2 18:04 queuedata.json
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc       100 Jun  2 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 00:55:18] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 20:56 run_atlas
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc       105 Jun  2 20:56 job.xml
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc      6391 Jun  2 20:56 init_data.xml
[2025-06-03 00:55:18] -rw-r--r--. 2 boinc boinc 217777821 Jun  2 20:56 EVNT.45006593._000124.pool.root.1
[2025-06-03 00:55:18] -rw-r--r--. 2 boinc boinc     15093 Jun  2 20:56 start_atlas.sh
[2025-06-03 00:55:18] drwxrwx--x. 2 boinc boinc        68 Jun  2 20:56 shared
[2025-06-03 00:55:18] -rw-r--r--. 2 boinc boinc    508874 Jun  2 20:56 input.tar.gz
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc         0 Jun  2 20:56 boinc_lockfile
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc      2520 Jun  2 20:56 pandaJob.out
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc    988298 Jun  2 20:56 agis_schedconf.cvmfs.json
[2025-06-03 00:55:18] drwx------. 4 boinc boinc      4096 Jun  2 20:56 pilot3
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc 176112102 Jun  3 00:32 HITS.45006595._003083.pool.root.1
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc       531 Jun  3 00:33 boinc_task_state.xml
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc      1020 Jun  3 00:34 memory_monitor_summary.json
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc   1603667 Jun  3 00:34 agis_ddmendpoints.agis.ALL.json
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc    367291 Jun  3 00:34 log.45006595._003083.job.log.tgz.1
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc        95 Jun  3 00:35 pilot_heartbeat.json
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc      7684 Jun  3 00:35 heartbeat.json
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc      4809 Jun  3 00:35 pilotlog.txt
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc   1141592 Jun  3 00:35 log.45006595._003083.job.log.1
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc       357 Jun  3 00:35 output.list
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc       620 Jun  3 00:35 runtime_log
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc   1525760 Jun  3 00:35 result.tar.gz
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc      8673 Jun  3 00:35 runtime_log.err
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc       656 Jun  3 00:35 AflKDmnpMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIHfKDmTW0Svm.diag
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc      8192 Jun  3 00:55 boinc_mmap_file
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc        28 Jun  3 00:55 wrapper_checkpoint.txt
[2025-06-03 00:55:18] -rw-r--r--. 1 boinc boinc     20542 Jun  3 00:55 stderr.txt
[2025-06-03 00:55:18] HITS file was successfully produced:
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc 176112102 Jun  3 00:32 shared/HITS.pool.root.1
[2025-06-03 00:55:18]  *** Contents of shared directory: ***
[2025-06-03 00:55:18] total 386672
[2025-06-03 00:55:18] -rw-r--r--. 2 boinc boinc 217777821 Jun  2 20:56 ATLAS.root_0
[2025-06-03 00:55:18] -rw-r--r--. 2 boinc boinc     15093 Jun  2 20:56 start_atlas.sh
[2025-06-03 00:55:18] -rw-r--r--. 2 boinc boinc    508874 Jun  2 20:56 input.tar.gz
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc 176112102 Jun  3 00:32 HITS.pool.root.1
[2025-06-03 00:55:18] -rw-------. 1 boinc boinc   1525760 Jun  3 00:35 result.tar.gz
00:55:20 (17697): run_atlas exited; CPU time 48532.305006
00:55:20 (17697): called boinc_finish(0)

</stderr_txt>
]]>

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