Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:24:38 (2403769): wrapper (7.7.26015): starting
15:24:38 (2403769): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 15:24:38] Arguments: --nthreads 4
[2025-06-04 15:24:38] Threads: 4
[2025-06-04 15:24:38] Checking for CVMFS
[2025-06-04 15:24:38] No cvmfs_config command found, will try listing directly
[2025-06-04 15:24:38] CVMFS is ok
[2025-06-04 15:24:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:24:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 15:24:38] Further information can be found at the LHC@home message board.
[2025-06-04 15:24:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:24:38] Checking for apptainer binary...
[2025-06-04 15:24:38] which: no apptainer in ((null))
[2025-06-04 15:24:38] apptainer is not installed, using version from CVMFS
[2025-06-04 15:24:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:24:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-06-04 15:24:38] apptainer works
[2025-06-04 15:24:38] Set ATHENA_PROC_NUMBER=4
[2025-06-04 15:24:38] Set ATHENA_CORE_NUMBER=4
[2025-06-04 15:24:38] Starting ATLAS job with PandaID=6677381655
[2025-06-04 15:24:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:37:25]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:37:25] 2025-06-04 16:35:03,117 | INFO     | monitor loop #836: job 0:6677381655 is in state 'finished'
[2025-06-04 18:37:25] 2025-06-04 16:35:03,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:37:25] 2025-06-04 16:35:05,621 | INFO     | monitor loop #837: job 0:6677381655 is in state 'finished'
[2025-06-04 18:37:25] 2025-06-04 16:35:05,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,091 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 18:37:25] 2025-06-04 16:35:08,091 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6677381655/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,092 | INFO     | extracted standard info from prmon json
[2025-06-04 18:37:25] 2025-06-04 16:35:08,093 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:37:25] 2025-06-04 16:35:08,093 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:37:25] 2025-06-04 16:35:08,093 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:37:25] 2025-06-04 16:35:08,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:37:25] 2025-06-04 16:35:08,098 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:37:25] 2025-06-04 16:35:08,098 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,100 | INFO     | sum of deviations: 4343152298.000006
[2025-06-04 18:37:25] 2025-06-04 16:35:08,100 | INFO     | mean x: 1749049188.0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,100 | INFO     | mean y: 2350394.8021390373
[2025-06-04 18:37:25] 2025-06-04 16:35:08,100 | INFO     | -- intersect: -3744067833.8973684
[2025-06-04 18:37:25] 2025-06-04 16:35:08,100 | INFO     | intersect: -3744067833.8973684
[2025-06-04 18:37:25] 2025-06-04 16:35:08,101 | INFO     | chi2: 1.8518124165701255
[2025-06-04 18:37:25] 2025-06-04 16:35:08,101 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 18:37:25] 2025-06-04 16:35:08,102 | INFO     | sum of deviations: 4663009884.99998
[2025-06-04 18:37:25] 2025-06-04 16:35:08,103 | INFO     | mean x: 1749049035.5
[2025-06-04 18:37:25] 2025-06-04 16:35:08,103 | INFO     | mean y: 2350703.10989011
[2025-06-04 18:37:25] 2025-06-04 16:35:08,103 | INFO     | -- intersect: -4360685783.572706
[2025-06-04 18:37:25] 2025-06-04 16:35:08,103 | INFO     | intersect: -4360685783.572706
[2025-06-04 18:37:25] 2025-06-04 16:35:08,104 | INFO     | chi2: 1.853140415621832
[2025-06-04 18:37:25] 2025-06-04 16:35:08,104 | INFO     | current chi2=1.853140415621832 (change=-0.07171347593436242 %)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,104 | INFO     | right removable region: 181
[2025-06-04 18:37:25] 2025-06-04 16:35:08,104 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 18:37:25] 2025-06-04 16:35:08,106 | INFO     | sum of deviations: -28491879786.49999
[2025-06-04 18:37:25] 2025-06-04 16:35:08,106 | INFO     | mean x: 1749049340.5
[2025-06-04 18:37:25] 2025-06-04 16:35:08,106 | INFO     | mean y: 2381737.2802197803
[2025-06-04 18:37:25] 2025-06-04 16:35:08,106 | INFO     | -- intersect: 26661371494.087227
[2025-06-04 18:37:25] 2025-06-04 16:35:08,106 | INFO     | intersect: 26661371494.087227
[2025-06-04 18:37:25] 2025-06-04 16:35:08,107 | INFO     | chi2: 0.07262783637209902
[2025-06-04 18:37:25] 2025-06-04 16:35:08,107 | INFO     | current chi2=0.07262783637209902 (change=96.07801331699577 %)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,107 | INFO     | sum of square deviations: 1719429448.0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,109 | INFO     | sum of deviations: -29514430563.999985
[2025-06-04 18:37:25] 2025-06-04 16:35:08,109 | INFO     | mean x: 1749049493.0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,109 | INFO     | mean y: 2382750.3559322036
[2025-06-04 18:37:25] 2025-06-04 16:35:08,109 | INFO     | -- intersect: 30025248692.423866
[2025-06-04 18:37:25] 2025-06-04 16:35:08,110 | INFO     | intersect: 30025248692.423866
[2025-06-04 18:37:25] 2025-06-04 16:35:08,110 | INFO     | chi2: 0.055484190602750644
[2025-06-04 18:37:25] 2025-06-04 16:35:08,110 | INFO     | current chi2=0.055484190602750644 (change=23.604786574551383 %)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,110 | INFO     | left removable region: 20
[2025-06-04 18:37:25] 2025-06-04 16:35:08,111 | INFO     | sum of square deviations: 1294014960.0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,112 | INFO     | sum of deviations: -24095304572.999996
[2025-06-04 18:37:25] 2025-06-04 16:35:08,112 | INFO     | mean x: 1749049615.0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,112 | INFO     | mean y: 2379495.5900621116
[2025-06-04 18:37:25] 2025-06-04 16:35:08,112 | INFO     | -- intersect: 32570691678.560017
[2025-06-04 18:37:25] 2025-06-04 16:35:08,112 | INFO     | intersect: 32570691678.560017
[2025-06-04 18:37:25] 2025-06-04 16:35:08,113 | INFO     | chi2: 0.05243355449505939
[2025-06-04 18:37:25] 2025-06-04 16:35:08,113 | INFO     | -- intersect: 32570691678.560017
[2025-06-04 18:37:25] 2025-06-04 16:35:08,113 | INFO     | current memory leak: -18.62 B/s (using 161 data points, chi2=0.05)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,114 | INFO     | ..............................
[2025-06-04 18:37:25] 2025-06-04 16:35:08,114 | INFO     | . Timing measurements:
[2025-06-04 18:37:25] 2025-06-04 16:35:08,114 | INFO     | . get job = 0 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,115 | INFO     | . initial setup = 1 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,115 | INFO     | . payload setup = 6 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,115 | INFO     | . stage-in = 0 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,115 | INFO     | . payload execution = 11383 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,115 | INFO     | . stage-out = 1 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,115 | INFO     | . log creation = 0 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,116 | INFO     | ..............................
[2025-06-04 18:37:25] 2025-06-04 16:35:08,345 | INFO     | 
[2025-06-04 18:37:25] 2025-06-04 16:35:08,345 | INFO     | job summary report
[2025-06-04 18:37:25] 2025-06-04 16:35:08,346 | INFO     | --------------------------------------------------
[2025-06-04 18:37:25] 2025-06-04 16:35:08,346 | INFO     | PanDA job id: 6677381655
[2025-06-04 18:37:25] 2025-06-04 16:35:08,346 | INFO     | task id: 45006595
[2025-06-04 18:37:25] 2025-06-04 16:35:08,346 | INFO     | errors: (none)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,347 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:37:25] 2025-06-04 16:35:08,347 | INFO     | pilot state: finished 
[2025-06-04 18:37:25] 2025-06-04 16:35:08,347 | INFO     | transexitcode: 0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,347 | INFO     | exeerrorcode: 0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,348 | INFO     | exeerrordiag: 
[2025-06-04 18:37:25] 2025-06-04 16:35:08,348 | INFO     | exitcode: 0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,348 | INFO     | exitmsg: OK
[2025-06-04 18:37:25] 2025-06-04 16:35:08,348 | INFO     | cpuconsumptiontime: 43089 s
[2025-06-04 18:37:25] 2025-06-04 16:35:08,349 | INFO     | nevents: 400
[2025-06-04 18:37:25] 2025-06-04 16:35:08,349 | INFO     | neventsw: 0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,349 | INFO     | pid: 2415008
[2025-06-04 18:37:25] 2025-06-04 16:35:08,349 | INFO     | pgrp: 2415008
[2025-06-04 18:37:25] 2025-06-04 16:35:08,350 | INFO     | corecount: 4
[2025-06-04 18:37:25] 2025-06-04 16:35:08,350 | INFO     | event service: False
[2025-06-04 18:37:25] 2025-06-04 16:35:08,350 | INFO     | sizes: {0: 2397344, 4: 2397550, 11: 2397578, 11394: 2426525, 11395: 2435488, 11397: 2435544, 11404: 2435842}
[2025-06-04 18:37:25] 2025-06-04 16:35:08,350 | INFO     | --------------------------------------------------
[2025-06-04 18:37:25] 2025-06-04 16:35:08,351 | INFO     | 
[2025-06-04 18:37:25] 2025-06-04 16:35:08,351 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-06-04 18:37:25] 2025-06-04 16:35:08,375 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,375 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,376 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,376 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,376 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,378 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,378 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,378 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,378 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,379 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,380 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,380 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:37:25] 2025-06-04 16:35:08,381 | INFO     | job 6677381655 has completed (purged errors)
[2025-06-04 18:37:25] 2025-06-04 16:35:08,381 | INFO     | overall cleanup function is called
[2025-06-04 18:37:25] 2025-06-04 16:35:08,416 | INFO     | PID=2407352 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 18:37:25] 2025-06-04 16:35:08,416 | INFO     | .. there are 4 such processes running
[2025-06-04 18:37:25] 2025-06-04 16:35:09,390 | INFO     | --- collectZombieJob: --- 10, [2415008]
[2025-06-04 18:37:25] 2025-06-04 16:35:09,390 | INFO     | zombie collector waiting for pid 2415008
[2025-06-04 18:37:25] 2025-06-04 16:35:09,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:37:25] 2025-06-04 16:35:09,391 | INFO     | collected zombie processes
[2025-06-04 18:37:25] 2025-06-04 16:35:09,391 | INFO     | will attempt to kill all subprocesses of pid=2415008
[2025-06-04 18:37:25] 2025-06-04 16:35:09,595 | INFO     | process IDs to be killed: [2415008] (in reverse order)
[2025-06-04 18:37:25] 2025-06-04 16:35:09,650 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:37:25] 2025-06-04 16:35:09,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:37:25] 2025-06-04 16:35:09,656 | INFO     | did not find any defunct processes belonging to 2415008
[2025-06-04 18:37:25] 2025-06-04 16:35:09,660 | INFO     | did not find any defunct processes belonging to 2415008
[2025-06-04 18:37:25] 2025-06-04 16:35:09,660 | INFO     | ready for new job
[2025-06-04 18:37:25] 2025-06-04 16:35:09,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:37:25] 2025-06-04 16:35:09,662 | INFO     | **************************************
[2025-06-04 18:37:25] 2025-06-04 16:35:09,662 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:37:25] 2025-06-04 16:35:09,662 | INFO     | **************************************
[2025-06-04 18:37:25] 2025-06-04 16:35:09,662 | INFO     | 
[2025-06-04 18:37:25] 2025-06-04 16:35:09,664 | INFO     | architecture information:
[2025-06-04 18:37:25] 2025-06-04 16:35:09,664 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:37:25] 2025-06-04 16:35:09,674 | INFO     | cat /etc/os-release:
[2025-06-04 18:37:25] NAME="CentOS Linux"
[2025-06-04 18:37:25] VERSION="7 (Core)"
[2025-06-04 18:37:25] ID="centos"
[2025-06-04 18:37:25] ID_LIKE="rhel fedora"
[2025-06-04 18:37:25] VERSION_ID="7"
[2025-06-04 18:37:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:37:25] ANSI_COLOR="0;31"
[2025-06-04 18:37:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:37:25] HOME_URL="https://www.centos.org/"
[2025-06-04 18:37:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:37:25] 
[2025-06-04 18:37:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:37:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:37:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:37:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:37:25] 
[2025-06-04 18:37:25] 2025-06-04 16:35:09,674 | INFO     | **************************************
[2025-06-04 18:37:25] 2025-06-04 16:35:10,177 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-06-04 18:37:25] 2025-06-04 16:35:10,193 | INFO     | sufficient remaining disk space (1647406219264 B)
[2025-06-04 18:37:25] 2025-06-04 16:35:10,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:37:25] 2025-06-04 16:35:10,194 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:37:25] 2025-06-04 16:35:10,194 | INFO     | update_server=False
[2025-06-04 18:37:25] 2025-06-04 16:35:10,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:37:25] 2025-06-04 16:35:10,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:37:25] 2025-06-04 16:35:10,422 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:37:25] 2025-06-04 16:35:10,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:37:25] 2025-06-04 16:35:10,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:37:25] 2025-06-04 16:35:10,630 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 18:37:25] 2025-06-04 16:35:10,630 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 18:37:25] 2025-06-04 16:35:10,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:37:25] 2025-06-04 16:35:10,631 | INFO     | will abort loop
[2025-06-04 18:37:25] 2025-06-04 16:35:11,096 | INFO     | all data control threads have been joined
[2025-06-04 18:37:25] 2025-06-04 16:35:11,199 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:11,244 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:11,375 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:11,437 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:11,464 | INFO     | all payload control threads have been joined
[2025-06-04 18:37:25] 2025-06-04 16:35:11,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:37:25] 2025-06-04 16:35:11,634 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:11,681 | INFO     | all job control threads have been joined
[2025-06-04 18:37:25] 2025-06-04 16:35:11,694 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,102 | INFO     | [data] control thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,179 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,199 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,450 | INFO     | [job] validate thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,469 | INFO     | [payload] control thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,495 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,683 | INFO     | [job] control thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:12,692 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:13,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:37:25] 2025-06-04 16:35:14,200 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:15,544 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:37:25] 2025-06-04 16:35:17,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23267208845120)>', '<ExcThread(monitor, started 23266768959232)>']
[2025-06-04 18:37:25] 2025-06-04 16:35:17,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:37:25] 2025-06-04 16:35:17,458 | INFO     | [monitor] control thread has ended
[2025-06-04 18:37:25] 2025-06-04 16:35:22,312 | INFO     | all workflow threads have been joined
[2025-06-04 18:37:25] 2025-06-04 16:35:22,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:37:25] 2025-06-04 16:35:22,313 | INFO     | traces error code: 0
[2025-06-04 18:37:25] 2025-06-04 16:35:22,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:37:25] 2025-06-04 16:35:22,478 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:37:25] 2025-06-04 16:35:22,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:37:25] 2025-06-04 16:35:22,484 [wrapper] pilotpid: 2407352
[2025-06-04 18:37:25] 2025-06-04 16:35:22,487 [wrapper] Pilot exit status: 0
[2025-06-04 18:37:25] 2025-06-04 16:35:22,498 [wrapper] pandaids: 6677381655
[2025-06-04 18:37:25] 2025-06-04 16:35:22,552 [wrapper] cleanup supervisor_pilot 2570589 2407353
[2025-06-04 18:37:25] 2025-06-04 16:35:22,555 [wrapper] Test setup, not cleaning
[2025-06-04 18:37:25] 2025-06-04 16:35:22,558 [wrapper] apfmon messages muted
[2025-06-04 18:37:25] 2025-06-04 16:35:22,560 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:37:25] 2025-06-04 16:35:22,562 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:37:25]  *** Error codes and diagnostics ***
[2025-06-04 18:37:25]     "exeErrorCode": 0,
[2025-06-04 18:37:25]     "exeErrorDiag": "",
[2025-06-04 18:37:25]     "pilotErrorCode": 0,
[2025-06-04 18:37:25]     "pilotErrorDiag": "",
[2025-06-04 18:37:25]  *** Listing of results directory ***
[2025-06-04 18:37:25] total 388692
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-04 18:37:25] -rwx------ 1 boinc boinc     37140 Jun  2 17:56 runpilot2-wrapper.sh
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc      5111 Jun  2 17:57 queuedata.json
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc       100 Jun  4 15:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:37:25] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 15:24 run_atlas
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc       105 Jun  4 15:24 job.xml
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc      6421 Jun  4 15:24 init_data.xml
[2025-06-04 18:37:25] -rw-r--r-- 2 boinc boinc 214846397 Jun  4 15:24 EVNT.45006593._000102.pool.root.1
[2025-06-04 18:37:25] drwxrwx--x 2 boinc boinc      4096 Jun  4 15:24 shared
[2025-06-04 18:37:25] -rw-r--r-- 2 boinc boinc    508874 Jun  4 15:24 input.tar.gz
[2025-06-04 18:37:25] -rw-r--r-- 2 boinc boinc     15093 Jun  4 15:24 start_atlas.sh
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc         0 Jun  4 15:24 boinc_lockfile
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc      2520 Jun  4 15:24 pandaJob.out
[2025-06-04 18:37:25] -rw------- 1 boinc boinc    986811 Jun  4 15:24 agis_schedconf.cvmfs.json
[2025-06-04 18:37:25] drwx------ 4 boinc boinc      4096 Jun  4 15:24 pilot3
[2025-06-04 18:37:25] -rw------- 1 boinc boinc 176594075 Jun  4 18:34 HITS.45006595._002529.pool.root.1
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc       528 Jun  4 18:34 boinc_task_state.xml
[2025-06-04 18:37:25] -rw------- 1 boinc boinc        95 Jun  4 18:34 pilot_heartbeat.json
[2025-06-04 18:37:25] -rw------- 1 boinc boinc      1036 Jun  4 18:34 memory_monitor_summary.json
[2025-06-04 18:37:25] -rw------- 1 boinc boinc   1598969 Jun  4 18:34 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:37:25] -rw------- 1 boinc boinc    297258 Jun  4 18:34 log.45006595._002529.job.log.tgz.1
[2025-06-04 18:37:25] -rw------- 1 boinc boinc      7742 Jun  4 18:35 heartbeat.json
[2025-06-04 18:37:25] -rw------- 1 boinc boinc      4550 Jun  4 18:35 pilotlog.txt
[2025-06-04 18:37:25] -rw------- 1 boinc boinc   1077608 Jun  4 18:35 log.45006595._002529.job.log.1
[2025-06-04 18:37:25] -rw------- 1 boinc boinc       357 Jun  4 18:35 output.list
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc       620 Jun  4 18:35 runtime_log
[2025-06-04 18:37:25] -rw------- 1 boinc boinc   1392640 Jun  4 18:35 result.tar.gz
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc      9026 Jun  4 18:35 runtime_log.err
[2025-06-04 18:37:25] -rw------- 1 boinc boinc       666 Jun  4 18:35 T9uMDmohMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSDfKDmvt3jFo.diag
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc        26 Jun  4 18:37 wrapper_checkpoint.txt
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc      8192 Jun  4 18:37 boinc_mmap_file
[2025-06-04 18:37:25] -rw-r--r-- 1 boinc boinc     20936 Jun  4 18:37 stderr.txt
[2025-06-04 18:37:25] HITS file was successfully produced:
[2025-06-04 18:37:25] -rw------- 1 boinc boinc 176594075 Jun  4 18:34 shared/HITS.pool.root.1
[2025-06-04 18:37:25]  *** Contents of shared directory: ***
[2025-06-04 18:37:25] total 384152
[2025-06-04 18:37:25] -rw-r--r-- 2 boinc boinc 214846397 Jun  4 15:24 ATLAS.root_0
[2025-06-04 18:37:25] -rw-r--r-- 2 boinc boinc    508874 Jun  4 15:24 input.tar.gz
[2025-06-04 18:37:25] -rw-r--r-- 2 boinc boinc     15093 Jun  4 15:24 start_atlas.sh
[2025-06-04 18:37:25] -rw------- 1 boinc boinc 176594075 Jun  4 18:34 HITS.pool.root.1
[2025-06-04 18:37:25] -rw------- 1 boinc boinc   1392640 Jun  4 18:35 result.tar.gz
18:37:27 (2403769): run_atlas exited; CPU time 43533.040348
18:37:27 (2403769): called boinc_finish(0)

</stderr_txt>
]]>

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