Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:04:03 (16262): wrapper (7.7.26015): starting
06:04:03 (16262): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:04:03] Arguments: --nthreads 8
[2025-06-03 06:04:03] Threads: 8
[2025-06-03 06:04:03] Checking for CVMFS
[2025-06-03 06:04:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:04:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:04:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:04:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:04:03] 2.11.2.0 24500 31430 94768 146724 1 210 13611554 25165825 4097 130560 0 15044201 99.811 17874993 4331 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:04:03] CVMFS is ok
[2025-06-03 06:04:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:04:03] Checking for apptainer binary...
[2025-06-03 06:04:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:04:03] Running /usr/bin/apptainer --version
[2025-06-03 06:04:04] apptainer version 1.3.2-1.el7
[2025-06-03 06:04:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:04:05] cg-vwn232.simple-grid.lan
[2025-06-03 06:04:05] apptainer works
[2025-06-03 06:04:05] Set ATHENA_PROC_NUMBER=8
[2025-06-03 06:04:05] Set ATHENA_CORE_NUMBER=8
[2025-06-03 06:04:05] Starting ATLAS job with PandaID=6677379625
[2025-06-03 06:04:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:40:40]  *** The last 200 lines of the pilot log: ***
[2025-06-03 09:40:40] 2025-06-03 07:39:34,196 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 09:40:40] 2025-06-03 07:39:34,196 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 09:40:40] 2025-06-03 07:39:34,196 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 09:40:40] 2025-06-03 07:39:34,201 | INFO     | fitting pss+swap vs Time
[2025-06-03 09:40:40] 2025-06-03 07:39:34,202 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 09:40:40] 2025-06-03 07:39:34,206 | INFO     | sum of deviations: 12001363443.000002
[2025-06-03 09:40:40] 2025-06-03 07:39:34,206 | INFO     | mean x: 1748929894.5
[2025-06-03 09:40:40] 2025-06-03 07:39:34,206 | INFO     | mean y: 2498040.276190476
[2025-06-03 09:40:40] 2025-06-03 07:39:34,206 | INFO     | -- intersect: -7306814443.385275
[2025-06-03 09:40:40] 2025-06-03 07:39:34,207 | INFO     | intersect: -7306814443.385275
[2025-06-03 09:40:40] 2025-06-03 07:39:34,207 | INFO     | chi2: 2.4664569958567366
[2025-06-03 09:40:40] 2025-06-03 07:39:34,207 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,209 | INFO     | sum of deviations: 26353341634.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,209 | INFO     | mean x: 1748929742.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,209 | INFO     | mean y: 2508766.7609756095
[2025-06-03 09:40:40] 2025-06-03 07:39:34,210 | INFO     | -- intersect: -17251037890.070194
[2025-06-03 09:40:40] 2025-06-03 07:39:34,210 | INFO     | intersect: -17251037890.070194
[2025-06-03 09:40:40] 2025-06-03 07:39:34,210 | INFO     | chi2: 1.6905444644352665
[2025-06-03 09:40:40] 2025-06-03 07:39:34,210 | INFO     | current chi2=1.6905444644352665 (change=31.458587468781424 %)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,211 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,212 | INFO     | sum of deviations: 26674000486.500008
[2025-06-03 09:40:40] 2025-06-03 07:39:34,213 | INFO     | mean x: 1748929589.5
[2025-06-03 09:40:40] 2025-06-03 07:39:34,213 | INFO     | mean y: 2509023.165
[2025-06-03 09:40:40] 2025-06-03 07:39:34,213 | INFO     | -- intersect: -18803772228.132847
[2025-06-03 09:40:40] 2025-06-03 07:39:34,213 | INFO     | intersect: -18803772228.132847
[2025-06-03 09:40:40] 2025-06-03 07:39:34,213 | INFO     | chi2: 1.6903258337254639
[2025-06-03 09:40:40] 2025-06-03 07:39:34,213 | INFO     | current chi2=1.6903258337254639 (change=0.01293256192913524 %)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,214 | INFO     | right removable region: 199
[2025-06-03 09:40:40] 2025-06-03 07:39:34,214 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,216 | INFO     | sum of deviations: -25425081149.00001
[2025-06-03 09:40:40] 2025-06-03 07:39:34,216 | INFO     | mean x: 1748930047.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,216 | INFO     | mean y: 2526312.3853658536
[2025-06-03 09:40:40] 2025-06-03 07:39:34,216 | INFO     | -- intersect: 16648343243.367102
[2025-06-03 09:40:40] 2025-06-03 07:39:34,216 | INFO     | intersect: 16648343243.367102
[2025-06-03 09:40:40] 2025-06-03 07:39:34,216 | INFO     | chi2: 0.8489646319451021
[2025-06-03 09:40:40] 2025-06-03 07:39:34,217 | INFO     | current chi2=0.8489646319451021 (change=65.57958912840441 %)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,217 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,226 | INFO     | sum of deviations: -29154052690.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,226 | INFO     | mean x: 1748930199.5
[2025-06-03 09:40:40] 2025-06-03 07:39:34,226 | INFO     | mean y: 2529260.97
[2025-06-03 09:40:40] 2025-06-03 07:39:34,226 | INFO     | -- intersect: 20557357773.18585
[2025-06-03 09:40:40] 2025-06-03 07:39:34,226 | INFO     | intersect: 20557357773.18585
[2025-06-03 09:40:40] 2025-06-03 07:39:34,227 | INFO     | chi2: 0.8184564839484274
[2025-06-03 09:40:40] 2025-06-03 07:39:34,227 | INFO     | current chi2=0.8184564839484274 (change=3.593571139327212 %)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,227 | INFO     | left removable region: 20
[2025-06-03 09:40:40] 2025-06-03 07:39:34,227 | INFO     | sum of square deviations: 1778377530.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,229 | INFO     | sum of deviations: -14197258950.000002
[2025-06-03 09:40:40] 2025-06-03 07:39:34,229 | INFO     | mean x: 1748930169.0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,229 | INFO     | mean y: 2543848.4636871507
[2025-06-03 09:40:40] 2025-06-03 07:39:34,229 | INFO     | -- intersect: 13964716714.401926
[2025-06-03 09:40:40] 2025-06-03 07:39:34,229 | INFO     | intersect: 13964716714.401926
[2025-06-03 09:40:40] 2025-06-03 07:39:34,230 | INFO     | chi2: 0.017988023312815928
[2025-06-03 09:40:40] 2025-06-03 07:39:34,230 | INFO     | -- intersect: 13964716714.401926
[2025-06-03 09:40:40] 2025-06-03 07:39:34,230 | INFO     | current memory leak: -7.98 B/s (using 179 data points, chi2=0.02)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,231 | INFO     | ..............................
[2025-06-03 09:40:40] 2025-06-03 07:39:34,231 | INFO     | . Timing measurements:
[2025-06-03 09:40:40] 2025-06-03 07:39:34,231 | INFO     | . get job = 0 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,231 | INFO     | . initial setup = 2 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,231 | INFO     | . payload setup = 12 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,232 | INFO     | . stage-in = 0 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,232 | INFO     | . payload execution = 12778 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,232 | INFO     | . stage-out = 4 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,232 | INFO     | . log creation = 1 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,232 | INFO     | ..............................
[2025-06-03 09:40:40] 2025-06-03 07:39:34,374 | INFO     | 
[2025-06-03 09:40:40] 2025-06-03 07:39:34,374 | INFO     | job summary report
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | --------------------------------------------------
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | PanDA job id: 6677379625
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | task id: 45006595
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | errors: (none)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | pilot state: finished 
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | transexitcode: 0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | exeerrorcode: 0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | exeerrordiag: 
[2025-06-03 09:40:40] 2025-06-03 07:39:34,375 | INFO     | exitcode: 0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | exitmsg: OK
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | cpuconsumptiontime: 48582 s
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | nevents: 400
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | neventsw: 0
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | pid: 28566
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | pgrp: 28566
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | corecount: 8
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | event service: False
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | sizes: {0: 2405176, 1: 2405204, 10: 2405410, 12: 2405438, 12794: 2434690, 12795: 2434689, 12799: 2443814, 12801: 2443870, 12891: 2444040}
[2025-06-03 09:40:40] 2025-06-03 07:39:34,376 | INFO     | --------------------------------------------------
[2025-06-03 09:40:40] 2025-06-03 07:39:34,377 | INFO     | 
[2025-06-03 09:40:40] 2025-06-03 07:39:34,377 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 09:40:40] 2025-06-03 07:39:34,584 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,584 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,584 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,584 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | job 6677379625 has completed (purged errors)
[2025-06-03 09:40:40] 2025-06-03 07:39:34,586 | INFO     | overall cleanup function is called
[2025-06-03 09:40:40] 2025-06-03 07:39:35,596 | INFO     | --- collectZombieJob: --- 10, [28566]
[2025-06-03 09:40:40] 2025-06-03 07:39:35,597 | INFO     | zombie collector waiting for pid 28566
[2025-06-03 09:40:40] 2025-06-03 07:39:35,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 09:40:40] 2025-06-03 07:39:35,597 | INFO     | collected zombie processes
[2025-06-03 09:40:40] 2025-06-03 07:39:35,597 | INFO     | will attempt to kill all subprocesses of pid=28566
[2025-06-03 09:40:40] 2025-06-03 07:39:35,700 | INFO     | process IDs to be killed: [28566] (in reverse order)
[2025-06-03 09:40:40] 2025-06-03 07:39:36,690 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 09:40:40] 2025-06-03 07:39:36,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 09:40:40] 2025-06-03 07:39:36,694 | INFO     | did not find any defunct processes belonging to 28566
[2025-06-03 09:40:40] 2025-06-03 07:39:36,697 | INFO     | did not find any defunct processes belonging to 28566
[2025-06-03 09:40:40] 2025-06-03 07:39:36,697 | INFO     | ready for new job
[2025-06-03 09:40:40] 2025-06-03 07:39:36,697 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 09:40:40] 2025-06-03 07:39:36,699 | INFO     | **************************************
[2025-06-03 09:40:40] 2025-06-03 07:39:36,699 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 09:40:40] 2025-06-03 07:39:36,699 | INFO     | **************************************
[2025-06-03 09:40:40] 2025-06-03 07:39:36,699 | INFO     | 
[2025-06-03 09:40:40] 2025-06-03 07:39:36,700 | INFO     | pilot is running in a VM
[2025-06-03 09:40:40] 2025-06-03 07:39:36,700 | INFO     | architecture information:
[2025-06-03 09:40:40] 2025-06-03 07:39:36,715 | INFO     | executing command: cat /etc/os-release
[2025-06-03 09:40:40] 2025-06-03 07:39:37,040 | INFO     | cat /etc/os-release:
[2025-06-03 09:40:40] NAME="CentOS Linux"
[2025-06-03 09:40:40] VERSION="7 (Core)"
[2025-06-03 09:40:40] ID="centos"
[2025-06-03 09:40:40] ID_LIKE="rhel fedora"
[2025-06-03 09:40:40] VERSION_ID="7"
[2025-06-03 09:40:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 09:40:40] ANSI_COLOR="0;31"
[2025-06-03 09:40:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 09:40:40] HOME_URL="https://www.centos.org/"
[2025-06-03 09:40:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 09:40:40] 
[2025-06-03 09:40:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 09:40:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 09:40:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 09:40:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 09:40:40] 
[2025-06-03 09:40:40] 2025-06-03 07:39:37,040 | INFO     | **************************************
[2025-06-03 09:40:40] 2025-06-03 07:39:37,544 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 09:40:40] 2025-06-03 07:39:37,757 | INFO     | sufficient remaining disk space (496829988864 B)
[2025-06-03 09:40:40] 2025-06-03 07:39:37,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 09:40:40] 2025-06-03 07:39:37,758 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 09:40:40] 2025-06-03 07:39:37,758 | INFO     | update_server=False
[2025-06-03 09:40:40] 2025-06-03 07:39:37,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 09:40:40] 2025-06-03 07:39:37,764 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 09:40:40] 2025-06-03 07:39:37,765 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 09:40:40] 2025-06-03 07:39:37,765 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:40:40] 2025-06-03 07:39:37,765 | INFO     | will abort loop
[2025-06-03 09:40:40] 2025-06-03 07:39:37,765 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 09:40:40] 2025-06-03 07:39:37,765 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 09:40:40] 2025-06-03 07:39:37,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 09:40:40] 2025-06-03 07:39:37,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 09:40:40] 2025-06-03 07:39:37,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 09:40:40] 2025-06-03 07:39:38,004 | INFO     | all payload control threads have been joined
[2025-06-03 09:40:40] 2025-06-03 07:39:38,192 | INFO     | all data control threads have been joined
[2025-06-03 09:40:40] 2025-06-03 07:39:38,326 | INFO     | all job control threads have been joined
[2025-06-03 09:40:40] 2025-06-03 07:39:38,764 | INFO     | [job] retrieve thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:38,770 | INFO     | [job] job monitor thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:38,784 | INFO     | [payload] validate_post thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:38,963 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:38,976 | INFO     | [payload] failed_post thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,010 | INFO     | [payload] control thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,122 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,198 | INFO     | [data] control thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,332 | INFO     | [job] control thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:40:40] 2025-06-03 07:39:39,518 | INFO     | [job] validate thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,588 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,797 | INFO     | [data] copytool_in thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,818 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:39,959 | INFO     | [data] copytool_out thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:40,394 | INFO     | [job] queue monitor thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:40,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 09:40:40] 2025-06-03 07:39:44,748 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 09:40:40] 2025-06-03 07:39:46,668 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956311177024)>', '<ExcThread(monitor, started 139955737196288)>']
[2025-06-03 09:40:40] 2025-06-03 07:39:46,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 09:40:40] 2025-06-03 07:39:46,818 | INFO     | [monitor] control thread has ended
[2025-06-03 09:40:40] 2025-06-03 07:39:51,694 | INFO     | all workflow threads have been joined
[2025-06-03 09:40:40] 2025-06-03 07:39:51,695 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 09:40:40] 2025-06-03 07:39:51,695 | INFO     | traces error code: 0
[2025-06-03 09:40:40] 2025-06-03 07:39:51,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 09:40:40] 2025-06-03 07:39:52,044 [wrapper] ==== pilot stdout END ====
[2025-06-03 09:40:40] 2025-06-03 07:39:52,099 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 09:40:40] 2025-06-03 07:39:52,208 [wrapper] pilotpid: 19958
[2025-06-03 09:40:40] 2025-06-03 07:39:52,304 [wrapper] Pilot exit status: 0
[2025-06-03 09:40:40] 2025-06-03 07:39:52,740 [wrapper] pandaids: 6677379625
[2025-06-03 09:40:40] 2025-06-03 07:39:53,584 [wrapper] cleanup supervisor_pilot 15577 19959
[2025-06-03 09:40:40] 2025-06-03 07:39:53,702 [wrapper] Test setup, not cleaning
[2025-06-03 09:40:40] 2025-06-03 07:39:53,814 [wrapper] apfmon messages muted
[2025-06-03 09:40:40] 2025-06-03 07:39:53,902 [wrapper] ==== wrapper stdout END ====
[2025-06-03 09:40:40] 2025-06-03 07:39:53,969 [wrapper] ==== wrapper stderr END ====
[2025-06-03 09:40:40]  *** Error codes and diagnostics ***
[2025-06-03 09:40:40]     "exeErrorCode": 0,
[2025-06-03 09:40:40]     "exeErrorDiag": "",
[2025-06-03 09:40:40]     "pilotErrorCode": 0,
[2025-06-03 09:40:40]     "pilotErrorDiag": "",
[2025-06-03 09:40:40]  *** Listing of results directory ***
[2025-06-03 09:40:40] total 387680
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 09:40:40] -rwx------. 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:52 queuedata.json
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 09:40:40] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:04 run_atlas
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:04 job.xml
[2025-06-03 09:40:40] -rw-r--r--. 2 boinc boinc 214758992 Jun  3 06:04 EVNT.45006593._000068.pool.root.1
[2025-06-03 09:40:40] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:04 start_atlas.sh
[2025-06-03 09:40:40] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:04 shared
[2025-06-03 09:40:40] -rw-r--r--. 2 boinc boinc    508875 Jun  3 06:04 input.tar.gz
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc      6392 Jun  3 06:04 init_data.xml
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:04 boinc_lockfile
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc      2521 Jun  3 06:04 pandaJob.out
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc    988073 Jun  3 06:04 agis_schedconf.cvmfs.json
[2025-06-03 09:40:40] drwx------. 4 boinc boinc      4096 Jun  3 06:04 pilot3
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc 175422635 Jun  3 09:36 HITS.45006595._001683.pool.root.1
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc       531 Jun  3 09:36 boinc_task_state.xml
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc      1018 Jun  3 09:37 memory_monitor_summary.json
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc   1603667 Jun  3 09:37 agis_ddmendpoints.agis.ALL.json
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc    366666 Jun  3 09:38 log.45006595._001683.job.log.tgz.1
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc      7686 Jun  3 09:39 heartbeat.json
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc        95 Jun  3 09:39 pilot_heartbeat.json
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc      4725 Jun  3 09:39 pilotlog.txt
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc   1123576 Jun  3 09:39 log.45006595._001683.job.log.1
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc       357 Jun  3 09:39 output.list
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc       620 Jun  3 09:39 runtime_log
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc   1505280 Jun  3 09:39 result.tar.gz
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc      8659 Jun  3 09:39 runtime_log.err
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc       656 Jun  3 09:39 f4KODm2bMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJ8eKDmtmEP3n.diag
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc      8192 Jun  3 09:40 boinc_mmap_file
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc        28 Jun  3 09:40 wrapper_checkpoint.txt
[2025-06-03 09:40:40] -rw-r--r--. 1 boinc boinc     20508 Jun  3 09:40 stderr.txt
[2025-06-03 09:40:40] HITS file was successfully produced:
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc 175422635 Jun  3 09:36 shared/HITS.pool.root.1
[2025-06-03 09:40:40]  *** Contents of shared directory: ***
[2025-06-03 09:40:40] total 383028
[2025-06-03 09:40:40] -rw-r--r--. 2 boinc boinc 214758992 Jun  3 06:04 ATLAS.root_0
[2025-06-03 09:40:40] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:04 start_atlas.sh
[2025-06-03 09:40:40] -rw-r--r--. 2 boinc boinc    508875 Jun  3 06:04 input.tar.gz
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc 175422635 Jun  3 09:36 HITS.pool.root.1
[2025-06-03 09:40:40] -rw-------. 1 boinc boinc   1505280 Jun  3 09:39 result.tar.gz
09:40:42 (16262): run_atlas exited; CPU time 48737.074488
09:40:42 (16262): called boinc_finish(0)

</stderr_txt>
]]>

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