Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:26 (21121): wrapper (7.7.26015): starting
01:38:26 (21121): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 01:38:26] Arguments: --nthreads 8
[2025-06-03 01:38:26] Threads: 8
[2025-06-03 01:38:26] Checking for CVMFS
[2025-06-03 01:38:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 01:38:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 01:38:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 01:38:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 01:38:27] 2.11.2.0 3391 30998 94320 146722 1 164 23129388 25165824 4053 130560 0 16369665 99.826 17802362 1974 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 01:38:27] CVMFS is ok
[2025-06-03 01:38:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 01:38:27] Checking for apptainer binary...
[2025-06-03 01:38:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 01:38:27] Running /usr/bin/apptainer --version
[2025-06-03 01:38:28] apptainer version 1.3.2-1.el7
[2025-06-03 01:38:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 01:38:29] cg-vwn306.simple-grid.lan
[2025-06-03 01:38:29] apptainer works
[2025-06-03 01:38:30] Set ATHENA_PROC_NUMBER=8
[2025-06-03 01:38:30] Set ATHENA_CORE_NUMBER=8
[2025-06-03 01:38:30] Starting ATLAS job with PandaID=6677386651
[2025-06-03 01:38:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 10:49:20]  *** The last 200 lines of the pilot log: ***
[2025-06-03 10:49:20] 2025-06-03 03:17:55,404 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6677386651/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 10:49:20] 2025-06-03 03:17:55,405 | INFO     | extracted standard info from prmon json
[2025-06-03 10:49:20] 2025-06-03 03:17:55,405 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 10:49:20] 2025-06-03 03:17:55,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 10:49:20] 2025-06-03 03:17:55,405 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 10:49:20] 2025-06-03 03:17:55,405 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 10:49:20] 2025-06-03 03:17:55,410 | INFO     | fitting pss+swap vs Time
[2025-06-03 10:49:20] 2025-06-03 03:17:55,411 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,412 | INFO     | sum of deviations: 87347201740.00003
[2025-06-03 10:49:20] 2025-06-03 03:17:55,413 | INFO     | mean x: 1748914134.5
[2025-06-03 10:49:20] 2025-06-03 03:17:55,413 | INFO     | mean y: 2407053.754716981
[2025-06-03 10:49:20] 2025-06-03 03:17:55,413 | INFO     | -- intersect: -51703616596.78581
[2025-06-03 10:49:20] 2025-06-03 03:17:55,413 | INFO     | intersect: -51703616596.78581
[2025-06-03 10:49:20] 2025-06-03 03:17:55,413 | INFO     | chi2: 6.785448458672092
[2025-06-03 10:49:20] 2025-06-03 03:17:55,414 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,422 | INFO     | sum of deviations: 98847250834.99998
[2025-06-03 10:49:20] 2025-06-03 03:17:55,422 | INFO     | mean x: 1748913982.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,422 | INFO     | mean y: 2415445.256038647
[2025-06-03 10:49:20] 2025-06-03 03:17:55,422 | INFO     | -- intersect: -62854594789.92735
[2025-06-03 10:49:20] 2025-06-03 03:17:55,422 | INFO     | intersect: -62854594789.92735
[2025-06-03 10:49:20] 2025-06-03 03:17:55,422 | INFO     | chi2: 6.077866825335535
[2025-06-03 10:49:20] 2025-06-03 03:17:55,423 | INFO     | current chi2=6.077866825335535 (change=10.427927316023414 %)
[2025-06-03 10:49:20] 2025-06-03 03:17:55,423 | INFO     | right removable region: 206
[2025-06-03 10:49:20] 2025-06-03 03:17:55,423 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,425 | INFO     | sum of deviations: 16592899872.000008
[2025-06-03 10:49:20] 2025-06-03 03:17:55,425 | INFO     | mean x: 1748914287.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,425 | INFO     | mean y: 2459856.782608696
[2025-06-03 10:49:20] 2025-06-03 03:17:55,425 | INFO     | -- intersect: -10548974302.130617
[2025-06-03 10:49:20] 2025-06-03 03:17:55,425 | INFO     | intersect: -10548974302.130617
[2025-06-03 10:49:20] 2025-06-03 03:17:55,425 | INFO     | chi2: 2.1658273001697914
[2025-06-03 10:49:20] 2025-06-03 03:17:55,425 | INFO     | current chi2=2.1658273001697914 (change=68.0812946504402 %)
[2025-06-03 10:49:20] 2025-06-03 03:17:55,426 | INFO     | sum of square deviations: 2555770710.5
[2025-06-03 10:49:20] 2025-06-03 03:17:55,433 | INFO     | sum of deviations: -17463615732.499992
[2025-06-03 10:49:20] 2025-06-03 03:17:55,434 | INFO     | mean x: 1748914439.5
[2025-06-03 10:49:20] 2025-06-03 03:17:55,434 | INFO     | mean y: 2486356.9752475247
[2025-06-03 10:49:20] 2025-06-03 03:17:55,434 | INFO     | -- intersect: 11952842308.301346
[2025-06-03 10:49:20] 2025-06-03 03:17:55,435 | INFO     | intersect: 11952842308.301346
[2025-06-03 10:49:20] 2025-06-03 03:17:55,435 | INFO     | chi2: 0.8735444740750434
[2025-06-03 10:49:20] 2025-06-03 03:17:55,435 | INFO     | current chi2=0.8735444740750434 (change=59.66693770982749 %)
[2025-06-03 10:49:20] 2025-06-03 03:17:55,436 | INFO     | sum of square deviations: 2370641658.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,437 | INFO     | sum of deviations: -17975850392.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,437 | INFO     | mean x: 1748914592.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,437 | INFO     | mean y: 2486750.9441624368
[2025-06-03 10:49:20] 2025-06-03 03:17:55,437 | INFO     | -- intersect: 13263971019.596004
[2025-06-03 10:49:20] 2025-06-03 03:17:55,437 | INFO     | intersect: 13263971019.596004
[2025-06-03 10:49:20] 2025-06-03 03:17:55,438 | INFO     | chi2: 0.8629439035351976
[2025-06-03 10:49:20] 2025-06-03 03:17:55,438 | INFO     | current chi2=0.8629439035351976 (change=1.2135124031401294 %)
[2025-06-03 10:49:20] 2025-06-03 03:17:55,438 | INFO     | left removable region: 30
[2025-06-03 10:49:20] 2025-06-03 03:17:55,438 | INFO     | sum of square deviations: 1690450300.0
[2025-06-03 10:49:20] 2025-06-03 03:17:55,440 | INFO     | sum of deviations: 4628790440.499999
[2025-06-03 10:49:20] 2025-06-03 03:17:55,440 | INFO     | mean x: 1748914866.5
[2025-06-03 10:49:20] 2025-06-03 03:17:55,440 | INFO     | mean y: 2489032.6079545454
[2025-06-03 10:49:20] 2025-06-03 03:17:55,440 | INFO     | -- intersect: -4786389064.135576
[2025-06-03 10:49:20] 2025-06-03 03:17:55,440 | INFO     | intersect: -4786389064.135576
[2025-06-03 10:49:20] 2025-06-03 03:17:55,440 | INFO     | chi2: 0.0011549979290628733
[2025-06-03 10:49:20] 2025-06-03 03:17:55,441 | INFO     | -- intersect: -4786389064.135576
[2025-06-03 10:49:20] 2025-06-03 03:17:55,441 | INFO     | current memory leak: 2.74 B/s (using 176 data points, chi2=0.00)
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | ..............................
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . Timing measurements:
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . get job = 0 s
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . initial setup = 2 s
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . payload setup = 22 s
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . stage-in = 0 s
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . payload execution = 12997 s
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . stage-out = 4 s
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | . log creation = 1 s
[2025-06-03 10:49:20] 2025-06-03 03:17:55,442 | INFO     | ..............................
[2025-06-03 10:49:20] 2025-06-03 03:17:56,014 | INFO     | 
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | job summary report
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | --------------------------------------------------
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | PanDA job id: 6677386651
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | task id: 45006595
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | errors: (none)
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | pilot state: finished 
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | transexitcode: 0
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | exeerrorcode: 0
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | exeerrordiag: 
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | exitcode: 0
[2025-06-03 10:49:20] 2025-06-03 03:17:56,015 | INFO     | exitmsg: OK
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | cpuconsumptiontime: 47460 s
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | nevents: 400
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | neventsw: 0
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | pid: 10389
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | pgrp: 10389
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | corecount: 8
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | event service: False
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | sizes: {0: 2405177, 1: 2405177, 10: 2405411, 12: 2405439, 13024: 2434740, 13025: 2434739, 13030: 2443864, 13033: 2443920, 13118: 2444090}
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | --------------------------------------------------
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | 
[2025-06-03 10:49:20] 2025-06-03 03:17:56,016 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-03 10:49:20] 2025-06-03 03:17:56,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,486 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | job 6677386651 has completed (purged errors)
[2025-06-03 10:49:20] 2025-06-03 03:17:56,488 | INFO     | overall cleanup function is called
[2025-06-03 10:49:20] 2025-06-03 03:17:57,497 | INFO     | --- collectZombieJob: --- 10, [10389]
[2025-06-03 10:49:20] 2025-06-03 03:17:57,497 | INFO     | zombie collector waiting for pid 10389
[2025-06-03 10:49:20] 2025-06-03 03:17:57,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 10:49:20] 2025-06-03 03:17:57,498 | INFO     | collected zombie processes
[2025-06-03 10:49:20] 2025-06-03 03:17:57,498 | INFO     | will attempt to kill all subprocesses of pid=10389
[2025-06-03 10:49:20] 2025-06-03 03:17:57,587 | INFO     | process IDs to be killed: [10389] (in reverse order)
[2025-06-03 10:49:20] 2025-06-03 03:17:58,166 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 10:49:20] 2025-06-03 03:17:58,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 10:49:20] 2025-06-03 03:17:58,170 | INFO     | did not find any defunct processes belonging to 10389
[2025-06-03 10:49:20] 2025-06-03 03:17:58,173 | INFO     | did not find any defunct processes belonging to 10389
[2025-06-03 10:49:20] 2025-06-03 03:17:58,173 | INFO     | ready for new job
[2025-06-03 10:49:20] 2025-06-03 03:17:58,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 10:49:20] 2025-06-03 03:17:58,176 | INFO     | **************************************
[2025-06-03 10:49:20] 2025-06-03 03:17:58,176 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 10:49:20] 2025-06-03 03:17:58,176 | INFO     | **************************************
[2025-06-03 10:49:20] 2025-06-03 03:17:58,176 | INFO     | 
[2025-06-03 10:49:20] 2025-06-03 03:17:58,176 | INFO     | pilot is running in a VM
[2025-06-03 10:49:20] 2025-06-03 03:17:58,177 | INFO     | architecture information:
[2025-06-03 10:49:20] 2025-06-03 03:17:58,177 | INFO     | executing command: cat /etc/os-release
[2025-06-03 10:49:20] 2025-06-03 03:17:58,200 | INFO     | cat /etc/os-release:
[2025-06-03 10:49:20] NAME="CentOS Linux"
[2025-06-03 10:49:20] VERSION="7 (Core)"
[2025-06-03 10:49:20] ID="centos"
[2025-06-03 10:49:20] ID_LIKE="rhel fedora"
[2025-06-03 10:49:20] VERSION_ID="7"
[2025-06-03 10:49:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 10:49:20] ANSI_COLOR="0;31"
[2025-06-03 10:49:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 10:49:20] HOME_URL="https://www.centos.org/"
[2025-06-03 10:49:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 10:49:20] 
[2025-06-03 10:49:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 10:49:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 10:49:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 10:49:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 10:49:20] 
[2025-06-03 10:49:20] 2025-06-03 03:17:58,200 | INFO     | **************************************
[2025-06-03 10:49:20] 2025-06-03 03:17:58,703 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-03 10:49:20] 2025-06-03 03:17:58,773 | INFO     | sufficient remaining disk space (497007198208 B)
[2025-06-03 10:49:20] 2025-06-03 03:17:58,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 10:49:20] 2025-06-03 03:17:58,773 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 10:49:20] 2025-06-03 03:17:58,774 | INFO     | update_server=False
[2025-06-03 10:49:20] 2025-06-03 03:17:58,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 10:49:20] 2025-06-03 03:17:58,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 10:49:20] 2025-06-03 03:17:58,774 | INFO     | aborting loop
[2025-06-03 10:49:20] 2025-06-03 03:17:58,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 10:49:20] 2025-06-03 03:17:58,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 10:49:20] 2025-06-03 03:17:59,121 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 10:49:20] 2025-06-03 03:17:59,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 10:49:20] 2025-06-03 03:17:59,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 10:49:20] 2025-06-03 03:17:59,269 | INFO     | all data control threads have been joined
[2025-06-03 10:49:20] 2025-06-03 03:17:59,435 | INFO     | all payload control threads have been joined
[2025-06-03 10:49:20] 2025-06-03 03:17:59,585 | INFO     | all job control threads have been joined
[2025-06-03 10:49:20] 2025-06-03 03:17:59,782 | INFO     | [job] job monitor thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:17:59,783 | INFO     | [job] retrieve thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,113 | INFO     | [payload] failed_post thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,158 | INFO     | [data] copytool_in thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,275 | INFO     | [data] control thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,441 | INFO     | [payload] control thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,461 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 10:49:20] 2025-06-03 03:18:00,591 | INFO     | [job] control thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,668 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:00,785 | INFO     | [data] copytool_out thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:01,042 | INFO     | [job] validate thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:01,045 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:01,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:01,322 | INFO     | [payload] validate_post thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:01,586 | INFO     | [job] queue monitor thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:02,794 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 10:49:20] 2025-06-03 03:18:04,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495782516544)>', '<ExcThread(monitor, started 140495334393600)>']
[2025-06-03 10:49:20] 2025-06-03 03:18:05,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 10:49:20] 2025-06-03 03:18:05,159 | INFO     | [monitor] control thread has ended
[2025-06-03 10:49:20] 2025-06-03 03:18:09,665 | INFO     | all workflow threads have been joined
[2025-06-03 10:49:20] 2025-06-03 03:18:09,665 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 10:49:20] 2025-06-03 03:18:09,666 | INFO     | traces error code: 0
[2025-06-03 10:49:20] 2025-06-03 03:18:09,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 10:49:20] 2025-06-03 03:18:10,038 [wrapper] ==== pilot stdout END ====
[2025-06-03 10:49:20] 2025-06-03 03:18:10,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 10:49:20] 2025-06-03 03:18:10,117 [wrapper] pilotpid: 27051
[2025-06-03 10:49:20] 2025-06-03 03:18:10,157 [wrapper] Pilot exit status: 0
[2025-06-03 10:49:20] 2025-06-03 03:18:10,221 [wrapper] pandaids: 6677386651
[2025-06-03 10:49:20] 2025-06-03 03:18:10,259 [wrapper] cleanup supervisor_pilot 27162 27052
[2025-06-03 10:49:20] 2025-06-03 03:18:10,273 [wrapper] Test setup, not cleaning
[2025-06-03 10:49:20] 2025-06-03 03:18:10,348 [wrapper] apfmon messages muted
[2025-06-03 10:49:20] 2025-06-03 03:18:10,473 [wrapper] ==== wrapper stdout END ====
[2025-06-03 10:49:20] 2025-06-03 03:18:10,574 [wrapper] ==== wrapper stderr END ====
[2025-06-03 10:49:21]  *** Error codes and diagnostics ***
[2025-06-03 10:49:21]     "exeErrorCode": 0,
[2025-06-03 10:49:21]     "exeErrorDiag": "",
[2025-06-03 10:49:21]     "pilotErrorCode": 0,
[2025-06-03 10:49:21]     "pilotErrorDiag": "",
[2025-06-03 10:49:21]  *** Listing of results directory ***
[2025-06-03 10:49:21] total 392200
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc    495897 Jun  2 19:07 pilot3.tar.gz
[2025-06-03 10:49:21] -rwx------. 1 boinc boinc     37140 Jun  2 19:09 runpilot2-wrapper.sh
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:10 queuedata.json
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc       100 Jun  3 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 10:49:21] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 01:38 run_atlas
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc       105 Jun  3 01:38 job.xml
[2025-06-03 10:49:21] -rw-r--r--. 2 boinc boinc 216043607 Jun  3 01:38 EVNT.45006593._000204.pool.root.1
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc      6391 Jun  3 01:38 init_data.xml
[2025-06-03 10:49:21] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:38 start_atlas.sh
[2025-06-03 10:49:21] drwxrwx--x. 2 boinc boinc        68 Jun  3 01:38 shared
[2025-06-03 10:49:21] -rw-r--r--. 2 boinc boinc    508877 Jun  3 01:38 input.tar.gz
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc         0 Jun  3 01:38 boinc_lockfile
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc      2521 Jun  3 01:38 pandaJob.out
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc    988091 Jun  3 01:38 agis_schedconf.cvmfs.json
[2025-06-03 10:49:21] drwx------. 4 boinc boinc      4096 Jun  3 01:38 pilot3
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc 178709974 Jun  3 05:15 HITS.45006595._005093.pool.root.1
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:15 boinc_task_state.xml
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc      1017 Jun  3 05:16 memory_monitor_summary.json
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc   1603667 Jun  3 05:16 agis_ddmendpoints.agis.ALL.json
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc    380260 Jun  3 05:16 log.45006595._005093.job.log.tgz.1
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc        95 Jun  3 05:17 pilot_heartbeat.json
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc      7686 Jun  3 05:17 heartbeat.json
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc      4416 Jun  3 05:18 pilotlog.txt
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc   1137504 Jun  3 05:18 log.45006595._005093.job.log.1
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc       357 Jun  3 05:18 output.list
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:18 runtime_log
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc   1536000 Jun  3 05:18 result.tar.gz
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc      8659 Jun  3 05:18 runtime_log.err
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc       656 Jun  3 05:18 cu5LDmcqNg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmetVKDmt6ZdOo.diag
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc      8192 Jun  3 10:49 boinc_mmap_file
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc        28 Jun  3 10:49 wrapper_checkpoint.txt
[2025-06-03 10:49:21] -rw-r--r--. 1 boinc boinc     20511 Jun  3 10:49 stderr.txt
[2025-06-03 10:49:21] HITS file was successfully produced:
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc 178709974 Jun  3 05:15 shared/HITS.pool.root.1
[2025-06-03 10:49:21]  *** Contents of shared directory: ***
[2025-06-03 10:49:21] total 387524
[2025-06-03 10:49:21] -rw-r--r--. 2 boinc boinc 216043607 Jun  3 01:38 ATLAS.root_0
[2025-06-03 10:49:21] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:38 start_atlas.sh
[2025-06-03 10:49:21] -rw-r--r--. 2 boinc boinc    508877 Jun  3 01:38 input.tar.gz
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc 178709974 Jun  3 05:15 HITS.pool.root.1
[2025-06-03 10:49:21] -rw-------. 1 boinc boinc   1536000 Jun  3 05:18 result.tar.gz
10:49:22 (21121): run_atlas exited; CPU time 47624.365103
10:49:22 (21121): called boinc_finish(0)

</stderr_txt>
]]>

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