Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:11:48 (3903): wrapper (7.7.26015): starting
06:11:48 (3903): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:11:48] Arguments: --nthreads 8
[2025-06-03 06:11:48] Threads: 8
[2025-06-03 06:11:48] Checking for CVMFS
[2025-06-03 06:11:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:11:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:11:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:11:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:11:50] 2.11.2.0 15047 31281 92624 146724 0 209 24092472 25165824 4636 130560 0 16951392 99.822 18169538 2034 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:11:50] CVMFS is ok
[2025-06-03 06:11:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:11:50] Checking for apptainer binary...
[2025-06-03 06:11:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:11:50] Running /usr/bin/apptainer --version
[2025-06-03 06:11:50] apptainer version 1.3.2-1.el7
[2025-06-03 06:11:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 09:16:20] cg-vwn358.simple-grid.lan
[2025-06-03 09:16:20] apptainer works
[2025-06-03 09:16:20] Set ATHENA_PROC_NUMBER=8
[2025-06-03 09:16:20] Set ATHENA_CORE_NUMBER=8
[2025-06-03 09:16:20] Starting ATLAS job with PandaID=6677386266
[2025-06-03 09:16:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:27:40]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:27:40] 2025-06-03 10:57:47,417 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:27:40] 2025-06-03 10:57:47,417 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:27:40] 2025-06-03 10:57:47,417 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:27:40] 2025-06-03 10:57:47,417 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:27:40] 2025-06-03 10:57:47,422 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:27:40] 2025-06-03 10:57:47,422 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,424 | INFO     | sum of deviations: 22569821178.499992
[2025-06-03 13:27:40] 2025-06-03 10:57:47,424 | INFO     | mean x: 1748941800.5
[2025-06-03 13:27:40] 2025-06-03 10:57:47,424 | INFO     | mean y: 2457986.158653846
[2025-06-03 13:27:40] 2025-06-03 10:57:47,424 | INFO     | -- intersect: -14143914373.693115
[2025-06-03 13:27:40] 2025-06-03 10:57:47,424 | INFO     | intersect: -14143914373.693115
[2025-06-03 13:27:40] 2025-06-03 10:57:47,425 | INFO     | chi2: 2.2823311298104074
[2025-06-03 13:27:40] 2025-06-03 10:57:47,425 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,427 | INFO     | sum of deviations: 35834750181.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,427 | INFO     | mean x: 1748941648.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,427 | INFO     | mean y: 2468072.231527094
[2025-06-03 13:27:40] 2025-06-03 10:57:47,427 | INFO     | -- intersect: -24159021329.005516
[2025-06-03 13:27:40] 2025-06-03 10:57:47,427 | INFO     | intersect: -24159021329.005516
[2025-06-03 13:27:40] 2025-06-03 10:57:47,427 | INFO     | chi2: 1.4727591938675637
[2025-06-03 13:27:40] 2025-06-03 10:57:47,428 | INFO     | current chi2=1.4727591938675637 (change=35.471274319870254 %)
[2025-06-03 13:27:40] 2025-06-03 10:57:47,428 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 13:27:40] 2025-06-03 10:57:47,429 | INFO     | sum of deviations: 34829337262.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,430 | INFO     | mean x: 1748941495.5
[2025-06-03 13:27:40] 2025-06-03 10:57:47,430 | INFO     | mean y: 2467252.101010101
[2025-06-03 13:27:40] 2025-06-03 10:57:47,430 | INFO     | -- intersect: -25305518184.935513
[2025-06-03 13:27:40] 2025-06-03 10:57:47,430 | INFO     | intersect: -25305518184.935513
[2025-06-03 13:27:40] 2025-06-03 10:57:47,437 | INFO     | chi2: 1.4733743347173442
[2025-06-03 13:27:40] 2025-06-03 10:57:47,438 | INFO     | current chi2=1.4733743347173442 (change=-0.041767917819961926 %)
[2025-06-03 13:27:40] 2025-06-03 10:57:47,438 | INFO     | right removable region: 197
[2025-06-03 13:27:40] 2025-06-03 10:57:47,438 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,440 | INFO     | sum of deviations: -9294715546.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,440 | INFO     | mean x: 1748941953.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,440 | INFO     | mean y: 2482469.275862069
[2025-06-03 13:27:40] 2025-06-03 10:57:47,440 | INFO     | -- intersect: 6269421939.528371
[2025-06-03 13:27:40] 2025-06-03 10:57:47,440 | INFO     | intersect: 6269421939.528371
[2025-06-03 13:27:40] 2025-06-03 10:57:47,441 | INFO     | chi2: 0.8577556213721356
[2025-06-03 13:27:40] 2025-06-03 10:57:47,441 | INFO     | current chi2=0.8577556213721356 (change=62.41756464832563 %)
[2025-06-03 13:27:40] 2025-06-03 10:57:47,441 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 13:27:40] 2025-06-03 10:57:47,442 | INFO     | sum of deviations: -6028017133.000004
[2025-06-03 13:27:40] 2025-06-03 10:57:47,443 | INFO     | mean x: 1748942105.5
[2025-06-03 13:27:40] 2025-06-03 10:57:47,443 | INFO     | mean y: 2479802.383838384
[2025-06-03 13:27:40] 2025-06-03 10:57:47,443 | INFO     | -- intersect: 4382609745.074441
[2025-06-03 13:27:40] 2025-06-03 10:57:47,443 | INFO     | intersect: 4382609745.074441
[2025-06-03 13:27:40] 2025-06-03 10:57:47,443 | INFO     | chi2: 0.8335744444338529
[2025-06-03 13:27:40] 2025-06-03 10:57:47,443 | INFO     | current chi2=0.8335744444338529 (change=2.819121942867658 %)
[2025-06-03 13:27:40] 2025-06-03 10:57:47,443 | INFO     | left removable region: 20
[2025-06-03 13:27:40] 2025-06-03 10:57:47,444 | INFO     | sum of square deviations: 1719429448.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,445 | INFO     | sum of deviations: 4452306369.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,445 | INFO     | mean x: 1748942075.0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,445 | INFO     | mean y: 2493110.892655367
[2025-06-03 13:27:40] 2025-06-03 10:57:47,445 | INFO     | -- intersect: -4526233524.906231
[2025-06-03 13:27:40] 2025-06-03 10:57:47,445 | INFO     | intersect: -4526233524.906231
[2025-06-03 13:27:40] 2025-06-03 10:57:47,446 | INFO     | chi2: 0.0009678724983349418
[2025-06-03 13:27:40] 2025-06-03 10:57:47,446 | INFO     | -- intersect: -4526233524.906231
[2025-06-03 13:27:40] 2025-06-03 10:57:47,446 | INFO     | current memory leak: 2.59 B/s (using 177 data points, chi2=0.00)
[2025-06-03 13:27:40] 2025-06-03 10:57:47,447 | INFO     | ..............................
[2025-06-03 13:27:40] 2025-06-03 10:57:47,447 | INFO     | . Timing measurements:
[2025-06-03 13:27:40] 2025-06-03 10:57:47,447 | INFO     | . get job = 0 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,447 | INFO     | . initial setup = 11 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,447 | INFO     | . payload setup = 78 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,447 | INFO     | . stage-in = 0 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,448 | INFO     | . payload execution = 12711 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,448 | INFO     | . stage-out = 3 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,448 | INFO     | . log creation = 1 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,448 | INFO     | ..............................
[2025-06-03 13:27:40] 2025-06-03 10:57:47,654 | INFO     | 
[2025-06-03 13:27:40] 2025-06-03 10:57:47,655 | INFO     | job summary report
[2025-06-03 13:27:40] 2025-06-03 10:57:47,655 | INFO     | --------------------------------------------------
[2025-06-03 13:27:40] 2025-06-03 10:57:47,655 | INFO     | PanDA job id: 6677386266
[2025-06-03 13:27:40] 2025-06-03 10:57:47,655 | INFO     | task id: 45006595
[2025-06-03 13:27:40] 2025-06-03 10:57:47,655 | INFO     | errors: (none)
[2025-06-03 13:27:40] 2025-06-03 10:57:47,655 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:27:40] 2025-06-03 10:57:47,655 | INFO     | pilot state: finished 
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | transexitcode: 0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | exeerrorcode: 0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | exeerrordiag: 
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | exitcode: 0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | exitmsg: OK
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | cpuconsumptiontime: 47916 s
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | nevents: 400
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | neventsw: 0
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | pid: 23265
[2025-06-03 13:27:40] 2025-06-03 10:57:47,656 | INFO     | pgrp: 23265
[2025-06-03 13:27:40] 2025-06-03 10:57:47,657 | INFO     | corecount: 8
[2025-06-03 13:27:40] 2025-06-03 10:57:47,657 | INFO     | event service: False
[2025-06-03 13:27:40] 2025-06-03 10:57:47,657 | INFO     | sizes: {0: 2404349, 1: 2405034, 2: 2405233, 13: 2405233, 23: 2405289, 34: 2405317, 45: 2405473, 56: 2405501, 67: 2405529, 77: 2405557, 82: 2405819, 88: 2406155, 12
[2025-06-03 13:27:40] 2025-06-03 10:57:47,657 | INFO     | --------------------------------------------------
[2025-06-03 13:27:40] 2025-06-03 10:57:47,657 | INFO     | 
[2025-06-03 13:27:40] 2025-06-03 10:57:47,657 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-03 13:27:40] 2025-06-03 10:57:48,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,151 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,152 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | job 6677386266 has completed (purged errors)
[2025-06-03 13:27:40] 2025-06-03 10:57:48,153 | INFO     | overall cleanup function is called
[2025-06-03 13:27:40] 2025-06-03 10:57:49,162 | INFO     | --- collectZombieJob: --- 10, [23265]
[2025-06-03 13:27:40] 2025-06-03 10:57:49,163 | INFO     | zombie collector waiting for pid 23265
[2025-06-03 13:27:40] 2025-06-03 10:57:49,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:27:40] 2025-06-03 10:57:49,163 | INFO     | collected zombie processes
[2025-06-03 13:27:40] 2025-06-03 10:57:49,163 | INFO     | will attempt to kill all subprocesses of pid=23265
[2025-06-03 13:27:40] 2025-06-03 10:57:49,288 | INFO     | process IDs to be killed: [23265] (in reverse order)
[2025-06-03 13:27:40] 2025-06-03 10:57:50,198 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:27:40] 2025-06-03 10:57:50,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:27:40] 2025-06-03 10:57:50,202 | INFO     | did not find any defunct processes belonging to 23265
[2025-06-03 13:27:40] 2025-06-03 10:57:50,205 | INFO     | did not find any defunct processes belonging to 23265
[2025-06-03 13:27:40] 2025-06-03 10:57:50,205 | INFO     | ready for new job
[2025-06-03 13:27:40] 2025-06-03 10:57:50,206 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:27:40] 2025-06-03 10:57:50,207 | INFO     | **************************************
[2025-06-03 13:27:40] 2025-06-03 10:57:50,208 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:27:40] 2025-06-03 10:57:50,208 | INFO     | **************************************
[2025-06-03 13:27:40] 2025-06-03 10:57:50,208 | INFO     | 
[2025-06-03 13:27:40] 2025-06-03 10:57:50,208 | INFO     | pilot is running in a VM
[2025-06-03 13:27:40] 2025-06-03 10:57:50,209 | INFO     | architecture information:
[2025-06-03 13:27:40] 2025-06-03 10:57:50,210 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:27:40] 2025-06-03 10:57:50,442 | INFO     | cat /etc/os-release:
[2025-06-03 13:27:40] NAME="CentOS Linux"
[2025-06-03 13:27:40] VERSION="7 (Core)"
[2025-06-03 13:27:40] ID="centos"
[2025-06-03 13:27:40] ID_LIKE="rhel fedora"
[2025-06-03 13:27:40] VERSION_ID="7"
[2025-06-03 13:27:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:27:40] ANSI_COLOR="0;31"
[2025-06-03 13:27:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:27:40] HOME_URL="https://www.centos.org/"
[2025-06-03 13:27:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:27:40] 
[2025-06-03 13:27:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:27:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:27:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:27:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:27:40] 
[2025-06-03 13:27:40] 2025-06-03 10:57:50,442 | INFO     | **************************************
[2025-06-03 13:27:40] 2025-06-03 10:57:50,946 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-03 13:27:40] 2025-06-03 10:57:51,154 | INFO     | sufficient remaining disk space (496455647232 B)
[2025-06-03 13:27:40] 2025-06-03 10:57:51,155 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:27:40] 2025-06-03 10:57:51,155 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:27:40] 2025-06-03 10:57:51,155 | INFO     | update_server=False
[2025-06-03 13:27:40] 2025-06-03 10:57:51,155 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:27:40] 2025-06-03 10:57:51,155 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:27:40] 2025-06-03 10:57:51,155 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:27:40] 2025-06-03 10:57:51,156 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:27:40] 2025-06-03 10:57:51,156 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:27:40] 2025-06-03 10:57:51,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:27:40] 2025-06-03 10:57:51,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:27:40] 2025-06-03 10:57:51,687 | INFO     | aborting loop
[2025-06-03 13:27:40] 2025-06-03 10:57:51,773 | INFO     | all job control threads have been joined
[2025-06-03 13:27:40] 2025-06-03 10:57:52,129 | INFO     | all data control threads have been joined
[2025-06-03 13:27:40] 2025-06-03 10:57:52,132 | INFO     | all payload control threads have been joined
[2025-06-03 13:27:40] 2025-06-03 10:57:52,161 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:52,301 | INFO     | [job] validate thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:52,400 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:52,523 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:52,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:27:40] 2025-06-03 10:57:52,693 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:52,780 | INFO     | [job] control thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:52,791 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:53,042 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:53,135 | INFO     | [data] control thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:53,138 | INFO     | [payload] control thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:53,169 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:53,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:27:40] 2025-06-03 10:57:53,335 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:53,588 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:53,674 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:57:57,184 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:58:01,738 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:27:40] 2025-06-03 10:58:02,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:27:40] 2025-06-03 10:58:04,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323032569664)>', '<ExcThread(monitor, started 140322218702592)>']
[2025-06-03 13:27:40] 2025-06-03 10:58:05,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:27:40] 2025-06-03 10:58:05,238 | INFO     | [monitor] control thread has ended
[2025-06-03 13:27:40] 2025-06-03 10:58:09,679 | INFO     | all workflow threads have been joined
[2025-06-03 13:27:40] 2025-06-03 10:58:09,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:27:40] 2025-06-03 10:58:09,680 | INFO     | traces error code: 0
[2025-06-03 13:27:40] 2025-06-03 10:58:09,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:27:40] 2025-06-03 10:58:10,092 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:27:40] 2025-06-03 10:58:10,186 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:27:40] 2025-06-03 10:58:10,290 [wrapper] pilotpid: 12663
[2025-06-03 13:27:40] 2025-06-03 10:58:10,399 [wrapper] Pilot exit status: 0
[2025-06-03 13:27:40] 2025-06-03 10:58:10,763 [wrapper] pandaids: 6677386266
[2025-06-03 13:27:40] 2025-06-03 10:58:11,375 [wrapper] cleanup supervisor_pilot 26640 12664
[2025-06-03 13:27:40] 2025-06-03 10:58:11,440 [wrapper] Test setup, not cleaning
[2025-06-03 13:27:40] 2025-06-03 10:58:11,520 [wrapper] apfmon messages muted
[2025-06-03 13:27:40] 2025-06-03 10:58:11,623 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:27:40] 2025-06-03 10:58:11,735 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:27:40]  *** Error codes and diagnostics ***
[2025-06-03 13:27:40]     "exeErrorCode": 0,
[2025-06-03 13:27:40]     "exeErrorDiag": "",
[2025-06-03 13:27:40]     "pilotErrorCode": 0,
[2025-06-03 13:27:40]     "pilotErrorDiag": "",
[2025-06-03 13:27:40]  *** Listing of results directory ***
[2025-06-03 13:27:40] total 394204
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc    495897 Jun  2 18:40 pilot3.tar.gz
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc      5111 Jun  2 19:03 queuedata.json
[2025-06-03 13:27:40] -rwx------. 1 boinc boinc     37140 Jun  2 19:03 runpilot2-wrapper.sh
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:27:40] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:11 run_atlas
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:11 job.xml
[2025-06-03 13:27:40] -rw-r--r--. 2 boinc boinc 218103861 Jun  3 06:11 EVNT.45006593._000193.pool.root.1
[2025-06-03 13:27:40] -rw-r--r--. 2 boinc boinc    508874 Jun  3 06:11 input.tar.gz
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc      6392 Jun  3 06:11 init_data.xml
[2025-06-03 13:27:40] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:11 start_atlas.sh
[2025-06-03 13:27:40] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:11 shared
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:11 boinc_lockfile
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc      2521 Jun  3 09:16 pandaJob.out
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc    986901 Jun  3 09:19 agis_schedconf.cvmfs.json
[2025-06-03 13:27:40] drwx------. 4 boinc boinc      4096 Jun  3 09:19 pilot3
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc 178681039 Jun  3 12:54 HITS.45006595._004825.pool.root.1
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc       530 Jun  3 12:55 boinc_task_state.xml
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc      1017 Jun  3 12:56 memory_monitor_summary.json
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc   1603667 Jun  3 12:56 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc    390214 Jun  3 12:56 log.45006595._004825.job.log.tgz.1
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc        95 Jun  3 12:57 pilot_heartbeat.json
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc      7681 Jun  3 12:57 heartbeat.json
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc      4611 Jun  3 12:58 pilotlog.txt
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc   1137274 Jun  3 12:58 log.45006595._004825.job.log.1
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc       357 Jun  3 12:58 output.list
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc       620 Jun  3 12:58 runtime_log
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc   1546240 Jun  3 12:58 result.tar.gz
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc       657 Jun  3 12:58 YDuLDmjkNg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZsVKDmQ7Hc8m.diag
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc      8659 Jun  3 12:58 runtime_log.err
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc      8192 Jun  3 13:27 boinc_mmap_file
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc        28 Jun  3 13:27 wrapper_checkpoint.txt
[2025-06-03 13:27:40] -rw-r--r--. 1 boinc boinc     20504 Jun  3 13:27 stderr.txt
[2025-06-03 13:27:40] HITS file was successfully produced:
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc 178681039 Jun  3 12:54 shared/HITS.pool.root.1
[2025-06-03 13:27:40]  *** Contents of shared directory: ***
[2025-06-03 13:27:40] total 389520
[2025-06-03 13:27:40] -rw-r--r--. 2 boinc boinc 218103861 Jun  3 06:11 ATLAS.root_0
[2025-06-03 13:27:40] -rw-r--r--. 2 boinc boinc    508874 Jun  3 06:11 input.tar.gz
[2025-06-03 13:27:40] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:11 start_atlas.sh
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc 178681039 Jun  3 12:54 HITS.pool.root.1
[2025-06-03 13:27:40] -rw-------. 1 boinc boinc   1546240 Jun  3 12:58 result.tar.gz
13:27:42 (3903): run_atlas exited; CPU time 48097.417458
13:27:42 (3903): called boinc_finish(0)

</stderr_txt>
]]>

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