Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:35:38 (21780): wrapper (7.7.26015): starting
08:35:38 (21780): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 08:35:38] Arguments: --nthreads 8
[2025-06-03 08:35:38] Threads: 8
[2025-06-03 08:35:38] Checking for CVMFS
[2025-06-03 08:35:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 08:35:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 08:35:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 08:35:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 08:35:40] 2.11.2.0 18345 31511 96972 146731 2 16 15157056 25165825 4633 130560 0 15943276 99.836 18071774 1948 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 08:35:40] CVMFS is ok
[2025-06-03 08:35:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:35:40] Checking for apptainer binary...
[2025-06-03 08:35:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 08:35:40] Running /usr/bin/apptainer --version
[2025-06-03 08:35:40] apptainer version 1.3.2-1.el7
[2025-06-03 08:35:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:51:09] cg-vwn239.simple-grid.lan
[2025-06-03 08:51:09] apptainer works
[2025-06-03 08:51:09] Set ATHENA_PROC_NUMBER=8
[2025-06-03 08:51:09] Set ATHENA_CORE_NUMBER=8
[2025-06-03 08:51:09] Starting ATLAS job with PandaID=6677385790
[2025-06-03 08:51:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:07:40]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:07:40] 2025-06-03 10:52:50,845 | INFO     | extracted standard info from prmon json
[2025-06-03 13:07:40] 2025-06-03 10:52:50,845 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:07:40] 2025-06-03 10:52:50,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:07:40] 2025-06-03 10:52:50,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:07:40] 2025-06-03 10:52:50,845 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:07:40] 2025-06-03 10:52:50,850 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:07:40] 2025-06-03 10:52:50,851 | INFO     | sum of square deviations: 3579276412.5
[2025-06-03 13:07:40] 2025-06-03 10:52:50,853 | INFO     | sum of deviations: 67637153861.000015
[2025-06-03 13:07:40] 2025-06-03 10:52:50,853 | INFO     | mean x: 1748940998.5
[2025-06-03 13:07:40] 2025-06-03 10:52:50,853 | INFO     | mean y: 2414541.3451327435
[2025-06-03 13:07:40] 2025-06-03 10:52:50,854 | INFO     | -- intersect: -33047112171.997383
[2025-06-03 13:07:40] 2025-06-03 10:52:50,854 | INFO     | intersect: -33047112171.997383
[2025-06-03 13:07:40] 2025-06-03 10:52:50,854 | INFO     | chi2: 7.64901438715106
[2025-06-03 13:07:40] 2025-06-03 10:52:50,854 | INFO     | sum of square deviations: 3346927870.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,856 | INFO     | sum of deviations: 96349223609.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,856 | INFO     | mean x: 1748940846.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,857 | INFO     | mean y: 2433119.529411765
[2025-06-03 13:07:40] 2025-06-03 10:52:50,857 | INFO     | -- intersect: -50344959831.65708
[2025-06-03 13:07:40] 2025-06-03 10:52:50,857 | INFO     | intersect: -50344959831.65708
[2025-06-03 13:07:40] 2025-06-03 10:52:50,857 | INFO     | chi2: 6.113644505935725
[2025-06-03 13:07:40] 2025-06-03 10:52:50,857 | INFO     | current chi2=6.113644505935725 (change=20.072780668244974 %)
[2025-06-03 13:07:40] 2025-06-03 10:52:50,857 | INFO     | right removable region: 220
[2025-06-03 13:07:40] 2025-06-03 10:52:50,858 | INFO     | sum of square deviations: 3346927870.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,860 | INFO     | sum of deviations: -7664537149.99999
[2025-06-03 13:07:40] 2025-06-03 10:52:50,860 | INFO     | mean x: 1748941151.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,860 | INFO     | mean y: 2463910.8733031675
[2025-06-03 13:07:40] 2025-06-03 10:52:50,860 | INFO     | -- intersect: 4007576941.5892124
[2025-06-03 13:07:40] 2025-06-03 10:52:50,860 | INFO     | intersect: 4007576941.5892124
[2025-06-03 13:07:40] 2025-06-03 10:52:50,861 | INFO     | chi2: 3.1123965468013535
[2025-06-03 13:07:40] 2025-06-03 10:52:50,861 | INFO     | current chi2=3.1123965468013535 (change=59.309835368729225 %)
[2025-06-03 13:07:40] 2025-06-03 10:52:50,861 | INFO     | sum of square deviations: 3124858590.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,863 | INFO     | sum of deviations: -44162991487.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,863 | INFO     | mean x: 1748941303.5
[2025-06-03 13:07:40] 2025-06-03 10:52:50,863 | INFO     | mean y: 2488807.675925926
[2025-06-03 13:07:40] 2025-06-03 10:52:50,864 | INFO     | -- intersect: 24719920868.412212
[2025-06-03 13:07:40] 2025-06-03 10:52:50,864 | INFO     | intersect: 24719920868.412212
[2025-06-03 13:07:40] 2025-06-03 10:52:50,864 | INFO     | chi2: 1.8274595257097472
[2025-06-03 13:07:40] 2025-06-03 10:52:50,864 | INFO     | current chi2=1.8274595257097472 (change=41.28448935634989 %)
[2025-06-03 13:07:40] 2025-06-03 10:52:50,865 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,866 | INFO     | sum of deviations: -46792193784.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,866 | INFO     | mean x: 1748941456.0
[2025-06-03 13:07:40] 2025-06-03 10:52:50,867 | INFO     | mean y: 2490693.113744076
[2025-06-03 13:07:40] 2025-06-03 10:52:50,867 | INFO     | -- intersect: 28097724082.522137
[2025-06-03 13:07:40] 2025-06-03 10:52:50,867 | INFO     | intersect: 28097724082.522137
[2025-06-03 13:07:40] 2025-06-03 10:52:50,867 | INFO     | chi2: 1.8128639786482208
[2025-06-03 13:07:40] 2025-06-03 10:52:50,867 | INFO     | current chi2=1.8128639786482208 (change=0.7986796345521158 %)
[2025-06-03 13:07:40] 2025-06-03 10:52:50,867 | INFO     | left removable region: 30
[2025-06-03 13:07:40] 2025-06-03 10:52:50,868 | INFO     | sum of square deviations: 2126802667.5
[2025-06-03 13:07:40] 2025-06-03 10:52:50,869 | INFO     | sum of deviations: 1221775587.9999998
[2025-06-03 13:07:40] 2025-06-03 10:52:50,869 | INFO     | mean x: 1748941730.5
[2025-06-03 13:07:40] 2025-06-03 10:52:50,870 | INFO     | mean y: 2496664.7157894736
[2025-06-03 13:07:40] 2025-06-03 10:52:50,870 | INFO     | -- intersect: -1002210703.6792027
[2025-06-03 13:07:40] 2025-06-03 10:52:50,870 | INFO     | intersect: -1002210703.6792027
[2025-06-03 13:07:40] 2025-06-03 10:52:50,870 | INFO     | chi2: 0.025552118479240205
[2025-06-03 13:07:40] 2025-06-03 10:52:50,870 | INFO     | -- intersect: -1002210703.6792027
[2025-06-03 13:07:40] 2025-06-03 10:52:50,870 | INFO     | current memory leak: 0.57 B/s (using 190 data points, chi2=0.03)
[2025-06-03 13:07:40] 2025-06-03 10:52:50,871 | INFO     | ..............................
[2025-06-03 13:07:40] 2025-06-03 10:52:50,871 | INFO     | . Timing measurements:
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | . get job = 0 s
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | . initial setup = 5 s
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | . payload setup = 156 s
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | . stage-in = 0 s
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | . payload execution = 13885 s
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | . stage-out = 4 s
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | . log creation = 1 s
[2025-06-03 13:07:40] 2025-06-03 10:52:50,872 | INFO     | ..............................
[2025-06-03 13:07:40] 2025-06-03 10:52:51,004 | INFO     | 
[2025-06-03 13:07:40] 2025-06-03 10:52:51,004 | INFO     | job summary report
[2025-06-03 13:07:40] 2025-06-03 10:52:51,004 | INFO     | --------------------------------------------------
[2025-06-03 13:07:40] 2025-06-03 10:52:51,004 | INFO     | PanDA job id: 6677385790
[2025-06-03 13:07:40] 2025-06-03 10:52:51,004 | INFO     | task id: 45006595
[2025-06-03 13:07:40] 2025-06-03 10:52:51,004 | INFO     | errors: (none)
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | pilot state: finished 
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | transexitcode: 0
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | exeerrorcode: 0
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | exeerrordiag: 
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | exitcode: 0
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | exitmsg: OK
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | cpuconsumptiontime: 49470 s
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | nevents: 400
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | neventsw: 0
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | pid: 10782
[2025-06-03 13:07:40] 2025-06-03 10:52:51,005 | INFO     | pgrp: 10782
[2025-06-03 13:07:40] 2025-06-03 10:52:51,006 | INFO     | corecount: 8
[2025-06-03 13:07:40] 2025-06-03 10:52:51,006 | INFO     | event service: False
[2025-06-03 13:07:40] 2025-06-03 10:52:51,006 | INFO     | sizes: {0: 2404950, 1: 2405205, 12: 2405205, 23: 2405233, 33: 2405261, 44: 2405317, 55: 2405473, 66: 2405501, 76: 2405529, 84: 2405791, 87: 2405819, 14045: 2435879
[2025-06-03 13:07:40] 2025-06-03 10:52:51,006 | INFO     | --------------------------------------------------
[2025-06-03 13:07:40] 2025-06-03 10:52:51,006 | INFO     | 
[2025-06-03 13:07:40] 2025-06-03 10:52:51,006 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-06-03 13:07:40] 2025-06-03 10:52:51,662 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:07:40] 2025-06-03 10:52:51,664 | INFO     | job 6677385790 has completed (purged errors)
[2025-06-03 13:07:40] 2025-06-03 10:52:51,665 | INFO     | overall cleanup function is called
[2025-06-03 13:07:40] 2025-06-03 10:52:52,675 | INFO     | --- collectZombieJob: --- 10, [10782]
[2025-06-03 13:07:40] 2025-06-03 10:52:52,675 | INFO     | zombie collector waiting for pid 10782
[2025-06-03 13:07:40] 2025-06-03 10:52:52,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:07:40] 2025-06-03 10:52:52,675 | INFO     | collected zombie processes
[2025-06-03 13:07:40] 2025-06-03 10:52:52,675 | INFO     | will attempt to kill all subprocesses of pid=10782
[2025-06-03 13:07:40] 2025-06-03 10:52:52,788 | INFO     | process IDs to be killed: [10782] (in reverse order)
[2025-06-03 13:07:40] 2025-06-03 10:52:53,596 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:07:40] 2025-06-03 10:52:53,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:07:40] 2025-06-03 10:52:53,600 | INFO     | did not find any defunct processes belonging to 10782
[2025-06-03 13:07:40] 2025-06-03 10:52:53,603 | INFO     | did not find any defunct processes belonging to 10782
[2025-06-03 13:07:40] 2025-06-03 10:52:53,604 | INFO     | ready for new job
[2025-06-03 13:07:40] 2025-06-03 10:52:53,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:07:40] 2025-06-03 10:52:53,611 | INFO     | **************************************
[2025-06-03 13:07:40] 2025-06-03 10:52:53,611 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:07:40] 2025-06-03 10:52:53,611 | INFO     | **************************************
[2025-06-03 13:07:40] 2025-06-03 10:52:53,612 | INFO     | 
[2025-06-03 13:07:40] 2025-06-03 10:52:53,612 | INFO     | pilot is running in a VM
[2025-06-03 13:07:40] 2025-06-03 10:52:53,612 | INFO     | architecture information:
[2025-06-03 13:07:40] 2025-06-03 10:52:53,617 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:07:40] 2025-06-03 10:52:53,769 | INFO     | cat /etc/os-release:
[2025-06-03 13:07:40] NAME="CentOS Linux"
[2025-06-03 13:07:40] VERSION="7 (Core)"
[2025-06-03 13:07:40] ID="centos"
[2025-06-03 13:07:40] ID_LIKE="rhel fedora"
[2025-06-03 13:07:40] VERSION_ID="7"
[2025-06-03 13:07:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:07:40] ANSI_COLOR="0;31"
[2025-06-03 13:07:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:07:40] HOME_URL="https://www.centos.org/"
[2025-06-03 13:07:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:07:40] 
[2025-06-03 13:07:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:07:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:07:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:07:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:07:40] 
[2025-06-03 13:07:40] 2025-06-03 10:52:53,770 | INFO     | **************************************
[2025-06-03 13:07:40] 2025-06-03 10:52:54,272 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-06-03 13:07:40] 2025-06-03 10:52:54,496 | INFO     | sufficient remaining disk space (496915972096 B)
[2025-06-03 13:07:40] 2025-06-03 10:52:54,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:07:40] 2025-06-03 10:52:54,496 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:07:40] 2025-06-03 10:52:54,496 | INFO     | update_server=False
[2025-06-03 13:07:40] 2025-06-03 10:52:54,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:07:40] 2025-06-03 10:52:54,498 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:07:40] 2025-06-03 10:52:54,498 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:07:40] 2025-06-03 10:52:54,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:07:40] 2025-06-03 10:52:54,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:07:40] 2025-06-03 10:52:54,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:07:40] 2025-06-03 10:52:54,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:07:40] 2025-06-03 10:52:54,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:07:40] 2025-06-03 10:52:54,505 | INFO     | aborting loop
[2025-06-03 13:07:40] 2025-06-03 10:52:54,665 | INFO     | all data control threads have been joined
[2025-06-03 13:07:40] 2025-06-03 10:52:55,503 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:55,511 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:55,658 | INFO     | all job control threads have been joined
[2025-06-03 13:07:40] 2025-06-03 10:52:55,671 | INFO     | [data] control thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:55,693 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:55,697 | INFO     | all payload control threads have been joined
[2025-06-03 13:07:40] 2025-06-03 10:52:55,710 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:55,712 | INFO     | [job] validate thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:55,986 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:56,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:07:40] 2025-06-03 10:52:56,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:56,508 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:56,511 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:56,643 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:56,664 | INFO     | [job] control thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:56,703 | INFO     | [payload] control thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:56,805 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:57,027 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:58,506 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:07:40] 2025-06-03 10:52:58,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199379347264)>', '<ExcThread(monitor, started 140199152449280)>']
[2025-06-03 13:07:40] 2025-06-03 10:52:59,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:07:40] 2025-06-03 10:52:59,527 | INFO     | [monitor] control thread has ended
[2025-06-03 13:07:40] 2025-06-03 10:53:03,881 | INFO     | all workflow threads have been joined
[2025-06-03 13:07:40] 2025-06-03 10:53:03,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:07:40] 2025-06-03 10:53:03,881 | INFO     | traces error code: 0
[2025-06-03 13:07:40] 2025-06-03 10:53:03,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:07:40] 2025-06-03 10:53:04,138 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:07:40] 2025-06-03 10:53:04,187 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:07:40] 2025-06-03 10:53:04,249 [wrapper] pilotpid: 2179
[2025-06-03 13:07:40] 2025-06-03 10:53:04,305 [wrapper] Pilot exit status: 0
[2025-06-03 13:07:40] 2025-06-03 10:53:04,819 [wrapper] pandaids: 6677385790
[2025-06-03 13:07:40] 2025-06-03 10:53:05,355 [wrapper] cleanup supervisor_pilot  6813 2180
[2025-06-03 13:07:40] 2025-06-03 10:53:05,413 [wrapper] Test setup, not cleaning
[2025-06-03 13:07:40] 2025-06-03 10:53:05,520 [wrapper] apfmon messages muted
[2025-06-03 13:07:40] 2025-06-03 10:53:05,639 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:07:40] 2025-06-03 10:53:05,737 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:07:40]  *** Error codes and diagnostics ***
[2025-06-03 13:07:40]     "exeErrorCode": 0,
[2025-06-03 13:07:40]     "exeErrorDiag": "",
[2025-06-03 13:07:40]     "pilotErrorCode": 0,
[2025-06-03 13:07:40]     "pilotErrorDiag": "",
[2025-06-03 13:07:40]  *** Listing of results directory ***
[2025-06-03 13:07:40] total 393608
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc    495897 Jun  2 18:40 pilot3.tar.gz
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc      5111 Jun  2 18:57 queuedata.json
[2025-06-03 13:07:40] -rwx------. 1 boinc boinc     37140 Jun  2 18:57 runpilot2-wrapper.sh
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc       100 Jun  3 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:07:40] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 08:35 run_atlas
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc       105 Jun  3 08:35 job.xml
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc      6392 Jun  3 08:35 init_data.xml
[2025-06-03 13:07:40] -rw-r--r--. 2 boinc boinc 213808435 Jun  3 08:35 EVNT.45006593._000184.pool.root.1
[2025-06-03 13:07:40] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:35 start_atlas.sh
[2025-06-03 13:07:40] drwxrwx--x. 2 boinc boinc        68 Jun  3 08:35 shared
[2025-06-03 13:07:40] -rw-r--r--. 2 boinc boinc    508875 Jun  3 08:35 input.tar.gz
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc         0 Jun  3 08:35 boinc_lockfile
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc      2521 Jun  3 08:51 pandaJob.out
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc    986901 Jun  3 08:54 agis_schedconf.cvmfs.json
[2025-06-03 13:07:40] drwx------. 4 boinc boinc      4096 Jun  3 08:54 pilot3
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc 182194472 Jun  3 12:49 HITS.45006595._004597.pool.root.1
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc       531 Jun  3 12:50 boinc_task_state.xml
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc      1020 Jun  3 12:51 memory_monitor_summary.json
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc   1603667 Jun  3 12:51 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc    394281 Jun  3 12:51 log.45006595._004597.job.log.tgz.1
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc        96 Jun  3 12:52 pilot_heartbeat.json
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc      7684 Jun  3 12:52 heartbeat.json
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc      4539 Jun  3 12:53 pilotlog.txt
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc   1219700 Jun  3 12:53 log.45006595._004597.job.log.1
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc       357 Jun  3 12:53 output.list
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc       620 Jun  3 12:53 runtime_log
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc   1638400 Jun  3 12:53 result.tar.gz
[2025-06-03 13:07:40] -rw-------. 1 boinc boinc       656 Jun  3 12:53 XuxMDmteNg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaafKDmcTK9Lm.diag
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc      8659 Jun  3 12:53 runtime_log.err
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc      8192 Jun  3 13:07 boinc_mmap_file
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc        28 Jun  3 13:07 wrapper_checkpoint.txt
[2025-06-03 13:07:40] -rw-r--r--. 1 boinc boinc     20454 Jun  3 13:07 stderr.txt
[2025-06-03 13:07:41] HITS file was successfully produced:
[2025-06-03 13:07:41] -rw-------. 1 boinc boinc 182194472 Jun  3 12:49 shared/HITS.pool.root.1
[2025-06-03 13:07:41]  *** Contents of shared directory: ***
[2025-06-03 13:07:41] total 388844
[2025-06-03 13:07:41] -rw-r--r--. 2 boinc boinc 213808435 Jun  3 08:35 ATLAS.root_0
[2025-06-03 13:07:41] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:35 start_atlas.sh
[2025-06-03 13:07:41] -rw-r--r--. 2 boinc boinc    508875 Jun  3 08:35 input.tar.gz
[2025-06-03 13:07:41] -rw-------. 1 boinc boinc 182194472 Jun  3 12:49 HITS.pool.root.1
[2025-06-03 13:07:41] -rw-------. 1 boinc boinc   1638400 Jun  3 12:53 result.tar.gz
13:07:42 (21780): run_atlas exited; CPU time 49661.416904
13:07:42 (21780): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN