Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:24:15 (12172): wrapper (7.7.26015): starting
03:24:15 (12172): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 03:24:15] Arguments: --nthreads 8
[2025-06-03 03:24:15] Threads: 8
[2025-06-03 03:24:15] Checking for CVMFS
[2025-06-03 03:24:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:24:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:31:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:31:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:31:35] 2.11.2.0 19945 31353 96364 146724 1 16 13520138 25165824 4635 130560 0 16059194 99.758 18819950 2089 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 04:31:35] CVMFS is ok
[2025-06-03 04:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:31:35] Checking for apptainer binary...
[2025-06-03 04:31:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:31:35] Running /usr/bin/apptainer --version
[2025-06-03 04:31:35] apptainer version 1.3.2-1.el7
[2025-06-03 04:31:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:31:53] cg-vwn324.simple-grid.lan
[2025-06-03 04:31:53] apptainer works
[2025-06-03 04:31:53] Set ATHENA_PROC_NUMBER=8
[2025-06-03 04:31:53] Set ATHENA_CORE_NUMBER=8
[2025-06-03 04:31:53] Starting ATLAS job with PandaID=6677379196
[2025-06-03 04:31:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 08:37:48]  *** The last 200 lines of the pilot log: ***
[2025-06-03 08:37:48] 2025-06-03 06:21:16,416 | INFO     | extracted standard info from prmon json
[2025-06-03 08:37:48] 2025-06-03 06:21:16,416 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 08:37:48] 2025-06-03 06:21:16,416 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 08:37:48] 2025-06-03 06:21:16,417 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 08:37:48] 2025-06-03 06:21:16,417 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 08:37:48] 2025-06-03 06:21:16,421 | INFO     | fitting pss+swap vs Time
[2025-06-03 08:37:48] 2025-06-03 06:21:16,422 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 08:37:48] 2025-06-03 06:21:16,424 | INFO     | sum of deviations: 24774259522.000015
[2025-06-03 08:37:48] 2025-06-03 06:21:16,424 | INFO     | mean x: 1748925065.5
[2025-06-03 08:37:48] 2025-06-03 06:21:16,424 | INFO     | mean y: 2497194.3457943927
[2025-06-03 08:37:48] 2025-06-03 06:21:16,424 | INFO     | -- intersect: -14255601748.129978
[2025-06-03 08:37:48] 2025-06-03 06:21:16,424 | INFO     | intersect: -14255601748.129978
[2025-06-03 08:37:48] 2025-06-03 06:21:16,425 | INFO     | chi2: 7.826185171664779
[2025-06-03 08:37:48] 2025-06-03 06:21:16,425 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,427 | INFO     | sum of deviations: 39378489976.000015
[2025-06-03 08:37:48] 2025-06-03 06:21:16,427 | INFO     | mean x: 1748924913.0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,427 | INFO     | mean y: 2507703.980861244
[2025-06-03 08:37:48] 2025-06-03 06:21:16,427 | INFO     | -- intersect: -24326415242.03421
[2025-06-03 08:37:48] 2025-06-03 06:21:16,427 | INFO     | intersect: -24326415242.03421
[2025-06-03 08:37:48] 2025-06-03 06:21:16,428 | INFO     | chi2: 7.134380553347656
[2025-06-03 08:37:48] 2025-06-03 06:21:16,428 | INFO     | current chi2=7.134380553347656 (change=8.839614743870968 %)
[2025-06-03 08:37:48] 2025-06-03 06:21:16,428 | INFO     | right removable region: 208
[2025-06-03 08:37:48] 2025-06-03 06:21:16,428 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,430 | INFO     | sum of deviations: -53421540011.000015
[2025-06-03 08:37:48] 2025-06-03 06:21:16,430 | INFO     | mean x: 1748925218.0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,430 | INFO     | mean y: 2554480.100478469
[2025-06-03 08:37:48] 2025-06-03 06:21:16,430 | INFO     | -- intersect: 33007597538.72431
[2025-06-03 08:37:48] 2025-06-03 06:21:16,430 | INFO     | intersect: 33007597538.72431
[2025-06-03 08:37:48] 2025-06-03 06:21:16,431 | INFO     | chi2: 2.5422756733173446
[2025-06-03 08:37:48] 2025-06-03 06:21:16,431 | INFO     | current chi2=2.5422756733173446 (change=67.51577406420407 %)
[2025-06-03 08:37:48] 2025-06-03 06:21:16,431 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,433 | INFO     | sum of deviations: -91354551935.49992
[2025-06-03 08:37:48] 2025-06-03 06:21:16,433 | INFO     | mean x: 1748925370.5
[2025-06-03 08:37:48] 2025-06-03 06:21:16,433 | INFO     | mean y: 2583446.151960784
[2025-06-03 08:37:48] 2025-06-03 06:21:16,433 | INFO     | -- intersect: 60696194792.47214
[2025-06-03 08:37:48] 2025-06-03 06:21:16,433 | INFO     | intersect: 60696194792.47214
[2025-06-03 08:37:48] 2025-06-03 06:21:16,434 | INFO     | chi2: 0.9960909229368329
[2025-06-03 08:37:48] 2025-06-03 06:21:16,434 | INFO     | current chi2=0.9960909229368329 (change=60.81892560309711 %)
[2025-06-03 08:37:48] 2025-06-03 06:21:16,434 | INFO     | sum of square deviations: 2443580700.0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,436 | INFO     | sum of deviations: -90021678114.99998
[2025-06-03 08:37:48] 2025-06-03 06:21:16,436 | INFO     | mean x: 1748925523.0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,436 | INFO     | mean y: 2582336.502512563
[2025-06-03 08:37:48] 2025-06-03 06:21:16,436 | INFO     | -- intersect: 64433116788.92063
[2025-06-03 08:37:48] 2025-06-03 06:21:16,436 | INFO     | intersect: 64433116788.92063
[2025-06-03 08:37:48] 2025-06-03 06:21:16,436 | INFO     | chi2: 0.9718690289198556
[2025-06-03 08:37:48] 2025-06-03 06:21:16,437 | INFO     | current chi2=0.9718690289198556 (change=2.43169508517982 %)
[2025-06-03 08:37:48] 2025-06-03 06:21:16,437 | INFO     | left removable region: 30
[2025-06-03 08:37:48] 2025-06-03 06:21:16,437 | INFO     | sum of square deviations: 1748737904.5
[2025-06-03 08:37:48] 2025-06-03 06:21:16,438 | INFO     | sum of deviations: -59563194165.999985
[2025-06-03 08:37:48] 2025-06-03 06:21:16,439 | INFO     | mean x: 1748925797.5
[2025-06-03 08:37:48] 2025-06-03 06:21:16,439 | INFO     | mean y: 2583272.2921348317
[2025-06-03 08:37:48] 2025-06-03 06:21:16,439 | INFO     | -- intersect: 59572177200.77947
[2025-06-03 08:37:48] 2025-06-03 06:21:16,439 | INFO     | intersect: 59572177200.77947
[2025-06-03 08:37:48] 2025-06-03 06:21:16,439 | INFO     | chi2: 0.17410701335527837
[2025-06-03 08:37:48] 2025-06-03 06:21:16,439 | INFO     | -- intersect: 59572177200.77947
[2025-06-03 08:37:48] 2025-06-03 06:21:16,439 | INFO     | current memory leak: -34.06 B/s (using 178 data points, chi2=0.17)
[2025-06-03 08:37:48] 2025-06-03 06:21:16,440 | INFO     | ..............................
[2025-06-03 08:37:48] 2025-06-03 06:21:16,440 | INFO     | . Timing measurements:
[2025-06-03 08:37:48] 2025-06-03 06:21:16,440 | INFO     | . get job = 0 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,441 | INFO     | . initial setup = 6 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,441 | INFO     | . payload setup = 145 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,441 | INFO     | . stage-in = 0 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,441 | INFO     | . payload execution = 13156 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,441 | INFO     | . stage-out = 5 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,441 | INFO     | . log creation = 1 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,441 | INFO     | ..............................
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | 
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | job summary report
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | --------------------------------------------------
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | PanDA job id: 6677379196
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | task id: 45006595
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | errors: (none)
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 08:37:48] 2025-06-03 06:21:16,561 | INFO     | pilot state: finished 
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | transexitcode: 0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | exeerrorcode: 0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | exeerrordiag: 
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | exitcode: 0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | exitmsg: OK
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | cpuconsumptiontime: 49022 s
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | nevents: 400
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | neventsw: 0
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | pid: 1932
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | pgrp: 1932
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | corecount: 8
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | event service: False
[2025-06-03 08:37:48] 2025-06-03 06:21:16,562 | INFO     | sizes: {0: 2404348, 1: 2405033, 2: 2405232, 13: 2405232, 23: 2405288, 34: 2405316, 45: 2405472, 55: 2405500, 66: 2405528, 77: 2405556, 88: 2405612, 95: 2406126, 98
[2025-06-03 08:37:48] 2025-06-03 06:21:16,563 | INFO     | --------------------------------------------------
[2025-06-03 08:37:48] 2025-06-03 06:21:16,563 | INFO     | 
[2025-06-03 08:37:48] 2025-06-03 06:21:16,563 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 08:37:48] 2025-06-03 06:21:17,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,101 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,101 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,101 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 08:37:48] 2025-06-03 06:21:17,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 08:37:48] 2025-06-03 06:21:17,103 | INFO     | job 6677379196 has completed (purged errors)
[2025-06-03 08:37:48] 2025-06-03 06:21:17,103 | INFO     | overall cleanup function is called
[2025-06-03 08:37:48] 2025-06-03 06:21:18,111 | INFO     | --- collectZombieJob: --- 10, [1932]
[2025-06-03 08:37:48] 2025-06-03 06:21:18,112 | INFO     | zombie collector waiting for pid 1932
[2025-06-03 08:37:48] 2025-06-03 06:21:18,112 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 08:37:48] 2025-06-03 06:21:18,112 | INFO     | collected zombie processes
[2025-06-03 08:37:48] 2025-06-03 06:21:18,112 | INFO     | will attempt to kill all subprocesses of pid=1932
[2025-06-03 08:37:48] 2025-06-03 06:21:18,221 | INFO     | process IDs to be killed: [1932] (in reverse order)
[2025-06-03 08:37:48] 2025-06-03 06:21:18,945 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 08:37:48] 2025-06-03 06:21:18,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 08:37:48] 2025-06-03 06:21:18,949 | INFO     | did not find any defunct processes belonging to 1932
[2025-06-03 08:37:48] 2025-06-03 06:21:18,952 | INFO     | did not find any defunct processes belonging to 1932
[2025-06-03 08:37:48] 2025-06-03 06:21:18,953 | INFO     | ready for new job
[2025-06-03 08:37:48] 2025-06-03 06:21:18,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 08:37:48] 2025-06-03 06:21:18,957 | INFO     | **************************************
[2025-06-03 08:37:48] 2025-06-03 06:21:18,957 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 08:37:48] 2025-06-03 06:21:18,957 | INFO     | **************************************
[2025-06-03 08:37:48] 2025-06-03 06:21:18,957 | INFO     | 
[2025-06-03 08:37:48] 2025-06-03 06:21:18,958 | INFO     | pilot is running in a VM
[2025-06-03 08:37:48] 2025-06-03 06:21:18,958 | INFO     | architecture information:
[2025-06-03 08:37:48] 2025-06-03 06:21:18,973 | INFO     | executing command: cat /etc/os-release
[2025-06-03 08:37:48] 2025-06-03 06:21:19,274 | INFO     | cat /etc/os-release:
[2025-06-03 08:37:48] NAME="CentOS Linux"
[2025-06-03 08:37:48] VERSION="7 (Core)"
[2025-06-03 08:37:48] ID="centos"
[2025-06-03 08:37:48] ID_LIKE="rhel fedora"
[2025-06-03 08:37:48] VERSION_ID="7"
[2025-06-03 08:37:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 08:37:48] ANSI_COLOR="0;31"
[2025-06-03 08:37:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 08:37:48] HOME_URL="https://www.centos.org/"
[2025-06-03 08:37:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 08:37:48] 
[2025-06-03 08:37:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 08:37:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 08:37:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 08:37:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 08:37:48] 
[2025-06-03 08:37:48] 2025-06-03 06:21:19,274 | INFO     | **************************************
[2025-06-03 08:37:48] 2025-06-03 06:21:19,778 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 08:37:48] 2025-06-03 06:21:20,161 | INFO     | sufficient remaining disk space (496740859904 B)
[2025-06-03 08:37:48] 2025-06-03 06:21:20,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 08:37:48] 2025-06-03 06:21:20,161 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 08:37:48] 2025-06-03 06:21:20,161 | INFO     | update_server=False
[2025-06-03 08:37:48] 2025-06-03 06:21:20,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 08:37:48] 2025-06-03 06:21:20,162 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 08:37:48] 2025-06-03 06:21:20,163 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 08:37:48] 2025-06-03 06:21:20,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 08:37:48] 2025-06-03 06:21:20,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 08:37:48] 2025-06-03 06:21:20,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 08:37:48] 2025-06-03 06:21:20,705 | INFO     | all data control threads have been joined
[2025-06-03 08:37:48] 2025-06-03 06:21:20,917 | INFO     | all payload control threads have been joined
[2025-06-03 08:37:48] 2025-06-03 06:21:21,076 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 08:37:48] 2025-06-03 06:21:21,145 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:37:48] 2025-06-03 06:21:21,146 | INFO     | aborting loop
[2025-06-03 08:37:48] 2025-06-03 06:21:21,171 | INFO     | [job] retrieve thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:21,245 | INFO     | [data] copytool_in thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:21,375 | INFO     | [payload] validate_post thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:21,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 08:37:48] 2025-06-03 06:21:21,627 | INFO     | all job control threads have been joined
[2025-06-03 08:37:48] 2025-06-03 06:21:21,689 | INFO     | [payload] failed_post thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:21,711 | INFO     | [data] control thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:21,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:21,924 | INFO     | [payload] control thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,056 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,068 | INFO     | [job] validate thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,087 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,111 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,152 | INFO     | [job] job monitor thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,174 | INFO     | [data] copytool_out thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,588 | INFO     | [job] queue monitor thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:22,634 | INFO     | [job] control thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:25,086 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 08:37:48] 2025-06-03 06:21:26,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140717993076544)>', '<ExcThread(monitor, started 140717414409984)>']
[2025-06-03 08:37:48] 2025-06-03 06:21:26,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 08:37:48] 2025-06-03 06:21:26,202 | INFO     | [monitor] control thread has ended
[2025-06-03 08:37:48] 2025-06-03 06:21:31,134 | INFO     | all workflow threads have been joined
[2025-06-03 08:37:48] 2025-06-03 06:21:31,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 08:37:48] 2025-06-03 06:21:31,135 | INFO     | traces error code: 0
[2025-06-03 08:37:48] 2025-06-03 06:21:31,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 08:37:48] 2025-06-03 06:21:31,535 [wrapper] ==== pilot stdout END ====
[2025-06-03 08:37:48] 2025-06-03 06:21:31,592 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 08:37:48] 2025-06-03 06:21:31,643 [wrapper] pilotpid: 27738
[2025-06-03 08:37:48] 2025-06-03 06:21:31,750 [wrapper] Pilot exit status: 0
[2025-06-03 08:37:48] 2025-06-03 06:21:32,235 [wrapper] pandaids: 6677379196
[2025-06-03 08:37:48] 2025-06-03 06:21:32,819 [wrapper] cleanup supervisor_pilot 10082 27739
[2025-06-03 08:37:48] 2025-06-03 06:21:32,923 [wrapper] Test setup, not cleaning
[2025-06-03 08:37:48] 2025-06-03 06:21:32,973 [wrapper] apfmon messages muted
[2025-06-03 08:37:48] 2025-06-03 06:21:33,065 [wrapper] ==== wrapper stdout END ====
[2025-06-03 08:37:48] 2025-06-03 06:21:33,178 [wrapper] ==== wrapper stderr END ====
[2025-06-03 08:37:48]  *** Error codes and diagnostics ***
[2025-06-03 08:37:48]     "exeErrorCode": 0,
[2025-06-03 08:37:48]     "exeErrorDiag": "",
[2025-06-03 08:37:48]     "pilotErrorCode": 0,
[2025-06-03 08:37:48]     "pilotErrorDiag": "",
[2025-06-03 08:37:48]  *** Listing of results directory ***
[2025-06-03 08:37:48] total 393512
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-03 08:37:48] -rwx------. 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc       100 Jun  3 03:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 08:37:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 03:24 run_atlas
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc       105 Jun  3 03:24 job.xml
[2025-06-03 08:37:48] -rw-r--r--. 2 boinc boinc 213338191 Jun  3 03:24 EVNT.45006593._000065.pool.root.1
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc      6390 Jun  3 03:24 init_data.xml
[2025-06-03 08:37:48] drwxrwx--x. 2 boinc boinc        68 Jun  3 03:24 shared
[2025-06-03 08:37:48] -rw-r--r--. 2 boinc boinc    508874 Jun  3 03:24 input.tar.gz
[2025-06-03 08:37:48] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:24 start_atlas.sh
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc         0 Jun  3 03:24 boinc_lockfile
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc      2521 Jun  3 04:31 pandaJob.out
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc    988073 Jun  3 04:34 agis_schedconf.cvmfs.json
[2025-06-03 08:37:48] drwx------. 4 boinc boinc      4096 Jun  3 04:34 pilot3
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc 182716420 Jun  3 08:18 HITS.45006595._001616.pool.root.1
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc       531 Jun  3 08:18 boinc_task_state.xml
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc      1016 Jun  3 08:19 memory_monitor_summary.json
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc   1603667 Jun  3 08:19 agis_ddmendpoints.agis.ALL.json
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc    380280 Jun  3 08:19 log.45006595._001616.job.log.tgz.1
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc        95 Jun  3 08:21 pilot_heartbeat.json
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc      7693 Jun  3 08:21 heartbeat.json
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc      4539 Jun  3 08:21 pilotlog.txt
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc   1157275 Jun  3 08:21 log.45006595._001616.job.log.1
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc       357 Jun  3 08:21 output.list
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc       620 Jun  3 08:21 runtime_log
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc   1556480 Jun  3 08:21 result.tar.gz
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc      8659 Jun  3 08:21 runtime_log.err
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc       656 Jun  3 08:21 KrULDmsbMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmD6eKDm1btrKn.diag
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc      8192 Jun  3 08:37 boinc_mmap_file
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc        28 Jun  3 08:37 wrapper_checkpoint.txt
[2025-06-03 08:37:48] -rw-r--r--. 1 boinc boinc     20509 Jun  3 08:37 stderr.txt
[2025-06-03 08:37:48] HITS file was successfully produced:
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc 182716420 Jun  3 08:18 shared/HITS.pool.root.1
[2025-06-03 08:37:48]  *** Contents of shared directory: ***
[2025-06-03 08:37:48] total 388812
[2025-06-03 08:37:48] -rw-r--r--. 2 boinc boinc 213338191 Jun  3 03:24 ATLAS.root_0
[2025-06-03 08:37:48] -rw-r--r--. 2 boinc boinc    508874 Jun  3 03:24 input.tar.gz
[2025-06-03 08:37:48] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:24 start_atlas.sh
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc 182716420 Jun  3 08:18 HITS.pool.root.1
[2025-06-03 08:37:48] -rw-------. 1 boinc boinc   1556480 Jun  3 08:21 result.tar.gz
08:37:50 (12172): run_atlas exited; CPU time 49197.608927
08:37:50 (12172): called boinc_finish(0)

</stderr_txt>
]]>

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