Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:05:27 (29683): wrapper (7.7.26015): starting
20:05:27 (29683): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 20:05:28] Arguments: --nthreads 8
[2025-06-02 20:05:28] Threads: 8
[2025-06-02 20:05:28] Checking for CVMFS
[2025-06-02 20:05:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 20:05:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 20:05:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 20:05:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 20:05:31] 2.11.2.0 3391 30665 94372 146714 2 16 22830376 25165824 4632 130560 0 16166043 99.824 17672899 1965 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 20:05:31] CVMFS is ok
[2025-06-02 20:05:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 20:05:31] Checking for apptainer binary...
[2025-06-02 20:05:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 20:05:32] Running /usr/bin/apptainer --version
[2025-06-02 20:05:32] apptainer version 1.3.2-1.el7
[2025-06-02 20:05:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 20:05:43] cg-vwn306.simple-grid.lan
[2025-06-02 20:05:43] apptainer works
[2025-06-02 20:05:43] Set ATHENA_PROC_NUMBER=8
[2025-06-02 20:05:43] Set ATHENA_CORE_NUMBER=8
[2025-06-02 20:05:43] Starting ATLAS job with PandaID=6666806819
[2025-06-02 20:05:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 01:38:21]  *** The last 200 lines of the pilot log: ***
[2025-06-03 01:38:21] 2025-06-02 23:38:00,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 01:38:21] 2025-06-02 23:38:00,194 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 01:38:21] 2025-06-02 23:38:00,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 01:38:21] 2025-06-02 23:38:00,201 | INFO     | fitting pss+swap vs Time
[2025-06-03 01:38:21] 2025-06-02 23:38:00,202 | INFO     | sum of square deviations: 9691828230.0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,205 | INFO     | sum of deviations: 101478549458.00006
[2025-06-03 01:38:21] 2025-06-02 23:38:00,205 | INFO     | mean x: 1748897842.0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,206 | INFO     | mean y: 2487964.1968253967
[2025-06-03 01:38:21] 2025-06-02 23:38:00,206 | INFO     | -- intersect: -18309394164.195637
[2025-06-03 01:38:21] 2025-06-02 23:38:00,206 | INFO     | intersect: -18309394164.195637
[2025-06-03 01:38:21] 2025-06-02 23:38:00,206 | INFO     | chi2: 7.283246793071779
[2025-06-03 01:38:21] 2025-06-02 23:38:00,207 | INFO     | sum of square deviations: 9237596457.5
[2025-06-03 01:38:21] 2025-06-02 23:38:00,210 | INFO     | sum of deviations: 99951821388.99968
[2025-06-03 01:38:21] 2025-06-02 23:38:00,211 | INFO     | mean x: 1748897689.5
[2025-06-03 01:38:21] 2025-06-02 23:38:00,211 | INFO     | mean y: 2487451.5935483873
[2025-06-03 01:38:21] 2025-06-02 23:38:00,211 | INFO     | -- intersect: -18920780120.526226
[2025-06-03 01:38:21] 2025-06-02 23:38:00,211 | INFO     | intersect: -18920780120.526226
[2025-06-03 01:38:21] 2025-06-02 23:38:00,212 | INFO     | chi2: 7.2911538306807016
[2025-06-03 01:38:21] 2025-06-02 23:38:00,212 | INFO     | current chi2=7.2911538306807016 (change=-0.10856473539306857 %)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,212 | INFO     | right removable region: 309
[2025-06-03 01:38:21] 2025-06-02 23:38:00,212 | INFO     | sum of square deviations: 9237596457.5
[2025-06-03 01:38:21] 2025-06-02 23:38:00,216 | INFO     | sum of deviations: -11768376596.499994
[2025-06-03 01:38:21] 2025-06-02 23:38:00,216 | INFO     | mean x: 1748897994.5
[2025-06-03 01:38:21] 2025-06-02 23:38:00,216 | INFO     | mean y: 2525967.5387096773
[2025-06-03 01:38:21] 2025-06-02 23:38:00,217 | INFO     | -- intersect: 2230561184.581484
[2025-06-03 01:38:21] 2025-06-02 23:38:00,217 | INFO     | intersect: 2230561184.581484
[2025-06-03 01:38:21] 2025-06-02 23:38:00,217 | INFO     | chi2: 2.244653538993083
[2025-06-03 01:38:21] 2025-06-02 23:38:00,217 | INFO     | current chi2=2.244653538993083 (change=69.1805920797807 %)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,218 | INFO     | sum of square deviations: 8797783560.0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,221 | INFO     | sum of deviations: -79135812583.00003
[2025-06-03 01:38:21] 2025-06-02 23:38:00,221 | INFO     | mean x: 1748898147.0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,221 | INFO     | mean y: 2549251.862295082
[2025-06-03 01:38:21] 2025-06-02 23:38:00,221 | INFO     | -- intersect: 15733838279.816973
[2025-06-03 01:38:21] 2025-06-02 23:38:00,221 | INFO     | intersect: 15733838279.816973
[2025-06-03 01:38:21] 2025-06-02 23:38:00,222 | INFO     | chi2: 0.31330510909037174
[2025-06-03 01:38:21] 2025-06-02 23:38:00,222 | INFO     | current chi2=0.31330510909037174 (change=86.04216180146378 %)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,222 | INFO     | sum of square deviations: 8372156975.0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,225 | INFO     | sum of deviations: -82472150578.49997
[2025-06-03 01:38:21] 2025-06-02 23:38:00,226 | INFO     | mean x: 1748898299.5
[2025-06-03 01:38:21] 2025-06-02 23:38:00,226 | INFO     | mean y: 2550418.63
[2025-06-03 01:38:21] 2025-06-02 23:38:00,226 | INFO     | -- intersect: 17230536507.943207
[2025-06-03 01:38:21] 2025-06-02 23:38:00,226 | INFO     | intersect: 17230536507.943207
[2025-06-03 01:38:21] 2025-06-02 23:38:00,226 | INFO     | chi2: 0.2670539014971715
[2025-06-03 01:38:21] 2025-06-02 23:38:00,227 | INFO     | current chi2=0.2670539014971715 (change=14.762353453948698 %)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,227 | INFO     | left removable region: 30
[2025-06-03 01:38:21] 2025-06-02 23:38:00,227 | INFO     | sum of square deviations: 6734191380.0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,230 | INFO     | sum of deviations: -53049029114.99999
[2025-06-03 01:38:21] 2025-06-02 23:38:00,230 | INFO     | mean x: 1748898574.0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,230 | INFO     | mean y: 2539925.11827957
[2025-06-03 01:38:21] 2025-06-02 23:38:00,230 | INFO     | -- intersect: 13779601807.68509
[2025-06-03 01:38:21] 2025-06-02 23:38:00,231 | INFO     | intersect: 13779601807.68509
[2025-06-03 01:38:21] 2025-06-02 23:38:00,231 | INFO     | chi2: 0.2263071926965299
[2025-06-03 01:38:21] 2025-06-02 23:38:00,231 | INFO     | -- intersect: 13779601807.68509
[2025-06-03 01:38:21] 2025-06-02 23:38:00,231 | INFO     | current memory leak: -7.88 B/s (using 279 data points, chi2=0.23)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,232 | INFO     | ..............................
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . Timing measurements:
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . get job = 0 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . initial setup = 11 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . payload setup = 182 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . stage-in = 0 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . payload execution = 19348 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . stage-out = 1 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | . log creation = 0 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,233 | INFO     | ..............................
[2025-06-03 01:38:21] 2025-06-02 23:38:00,357 | INFO     | 
[2025-06-03 01:38:21] 2025-06-02 23:38:00,357 | INFO     | job summary report
[2025-06-03 01:38:21] 2025-06-02 23:38:00,357 | INFO     | --------------------------------------------------
[2025-06-03 01:38:21] 2025-06-02 23:38:00,357 | INFO     | PanDA job id: 6666806819
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | task id: 44871837
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | errors: (none)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | pilot state: finished 
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | transexitcode: 0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | exeerrorcode: 0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | exeerrordiag: 
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | exitcode: 0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | exitmsg: OK
[2025-06-03 01:38:21] 2025-06-02 23:38:00,358 | INFO     | cpuconsumptiontime: 71989 s
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | nevents: 400
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | neventsw: 0
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | pid: 7632
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | pgrp: 7632
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | corecount: 8
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | event service: False
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | sizes: {0: 2404956, 1: 2405211, 12: 2405211, 23: 2405239, 34: 2405267, 44: 2405295, 55: 2405451, 66: 2405479, 76: 2405507, 87: 2405563, 91: 2405797, 98: 2406105, 1
[2025-06-03 01:38:21] 2025-06-02 23:38:00,359 | INFO     | --------------------------------------------------
[2025-06-03 01:38:21] 2025-06-02 23:38:00,360 | INFO     | 
[2025-06-03 01:38:21] 2025-06-02 23:38:00,360 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-03 01:38:21] 2025-06-02 23:38:00,505 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,506 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,506 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,506 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,506 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,506 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,506 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,506 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,507 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,508 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 01:38:21] 2025-06-02 23:38:00,508 | INFO     | job 6666806819 has completed (purged errors)
[2025-06-03 01:38:21] 2025-06-02 23:38:00,508 | INFO     | overall cleanup function is called
[2025-06-03 01:38:21] 2025-06-02 23:38:01,516 | INFO     | --- collectZombieJob: --- 10, [7632]
[2025-06-03 01:38:21] 2025-06-02 23:38:01,516 | INFO     | zombie collector waiting for pid 7632
[2025-06-03 01:38:21] 2025-06-02 23:38:01,517 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 01:38:21] 2025-06-02 23:38:01,517 | INFO     | collected zombie processes
[2025-06-03 01:38:21] 2025-06-02 23:38:01,517 | INFO     | will attempt to kill all subprocesses of pid=7632
[2025-06-03 01:38:21] 2025-06-02 23:38:01,614 | INFO     | process IDs to be killed: [7632] (in reverse order)
[2025-06-03 01:38:21] 2025-06-02 23:38:01,675 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 01:38:21] 2025-06-02 23:38:01,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 01:38:21] 2025-06-02 23:38:01,679 | INFO     | did not find any defunct processes belonging to 7632
[2025-06-03 01:38:21] 2025-06-02 23:38:01,682 | INFO     | did not find any defunct processes belonging to 7632
[2025-06-03 01:38:21] 2025-06-02 23:38:01,682 | INFO     | ready for new job
[2025-06-03 01:38:21] 2025-06-02 23:38:01,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 01:38:21] 2025-06-02 23:38:01,685 | INFO     | **************************************
[2025-06-03 01:38:21] 2025-06-02 23:38:01,685 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 01:38:21] 2025-06-02 23:38:01,685 | INFO     | **************************************
[2025-06-03 01:38:21] 2025-06-02 23:38:01,685 | INFO     | 
[2025-06-03 01:38:21] 2025-06-02 23:38:01,686 | INFO     | pilot is running in a VM
[2025-06-03 01:38:21] 2025-06-02 23:38:01,686 | INFO     | architecture information:
[2025-06-03 01:38:21] 2025-06-02 23:38:01,686 | INFO     | executing command: cat /etc/os-release
[2025-06-03 01:38:21] 2025-06-02 23:38:01,757 | INFO     | cat /etc/os-release:
[2025-06-03 01:38:21] NAME="CentOS Linux"
[2025-06-03 01:38:21] VERSION="7 (Core)"
[2025-06-03 01:38:21] ID="centos"
[2025-06-03 01:38:21] ID_LIKE="rhel fedora"
[2025-06-03 01:38:21] VERSION_ID="7"
[2025-06-03 01:38:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 01:38:21] ANSI_COLOR="0;31"
[2025-06-03 01:38:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 01:38:21] HOME_URL="https://www.centos.org/"
[2025-06-03 01:38:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 01:38:21] 
[2025-06-03 01:38:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 01:38:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 01:38:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 01:38:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 01:38:21] 
[2025-06-03 01:38:21] 2025-06-02 23:38:01,757 | INFO     | **************************************
[2025-06-03 01:38:21] 2025-06-02 23:38:02,259 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-03 01:38:21] 2025-06-02 23:38:02,308 | INFO     | sufficient remaining disk space (497033412608 B)
[2025-06-03 01:38:21] 2025-06-02 23:38:02,309 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 01:38:21] 2025-06-02 23:38:02,309 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 01:38:21] 2025-06-02 23:38:02,309 | INFO     | update_server=False
[2025-06-03 01:38:21] 2025-06-02 23:38:02,309 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 01:38:21] 2025-06-02 23:38:02,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 01:38:21] 2025-06-02 23:38:02,323 | INFO     | all payload control threads have been joined
[2025-06-03 01:38:21] 2025-06-02 23:38:02,549 | INFO     | all job control threads have been joined
[2025-06-03 01:38:21] 2025-06-02 23:38:02,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 01:38:21] 2025-06-02 23:38:02,635 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 01:38:21] 2025-06-02 23:38:02,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 01:38:21] 2025-06-02 23:38:02,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 01:38:21] 2025-06-02 23:38:02,639 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 01:38:21] 2025-06-02 23:38:02,640 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 01:38:21] 2025-06-02 23:38:02,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 01:38:21] 2025-06-02 23:38:02,640 | INFO     | will abort loop
[2025-06-03 01:38:21] 2025-06-02 23:38:03,084 | INFO     | all data control threads have been joined
[2025-06-03 01:38:21] 2025-06-02 23:38:03,314 | INFO     | [job] retrieve thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,315 | INFO     | [job] queue monitor thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,329 | INFO     | [payload] control thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,364 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,424 | INFO     | [data] copytool_in thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,554 | INFO     | [job] control thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,645 | INFO     | [job] job monitor thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,705 | INFO     | [payload] failed_post thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,968 | INFO     | [job] validate thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:03,971 | INFO     | [payload] validate_post thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:04,090 | INFO     | [data] control thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:04,145 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:04,364 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:04,630 | INFO     | [data] copytool_out thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:05,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 01:38:21] 2025-06-02 23:38:09,631 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:12,492 | INFO     | job.realtimelogging is not enabled
[2025-06-03 01:38:21] 2025-06-02 23:38:13,498 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 01:38:21] 2025-06-02 23:38:15,435 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629888255808)>', '<ExcThread(monitor, started 139629286110976)>']
[2025-06-03 01:38:21] 2025-06-02 23:38:15,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 01:38:21] 2025-06-02 23:38:15,710 | INFO     | [monitor] control thread has ended
[2025-06-03 01:38:21] 2025-06-02 23:38:20,461 | INFO     | all workflow threads have been joined
[2025-06-03 01:38:21] 2025-06-02 23:38:20,461 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 01:38:21] 2025-06-02 23:38:20,462 | INFO     | traces error code: 0
[2025-06-03 01:38:21] 2025-06-02 23:38:20,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 01:38:21] 2025-06-02 23:38:20,711 [wrapper] ==== pilot stdout END ====
[2025-06-03 01:38:21] 2025-06-02 23:38:20,726 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 01:38:21] 2025-06-02 23:38:20,730 [wrapper] pilotpid: 989
[2025-06-03 01:38:21] 2025-06-02 23:38:20,735 [wrapper] Pilot exit status: 0
[2025-06-03 01:38:21] 2025-06-02 23:38:20,774 [wrapper] pandaids: 6666806819
[2025-06-03 01:38:21] 2025-06-02 23:38:20,818 [wrapper] cleanup supervisor_pilot 27457 990
[2025-06-03 01:38:21] 2025-06-02 23:38:20,861 [wrapper] Test setup, not cleaning
[2025-06-03 01:38:21] 2025-06-02 23:38:20,900 [wrapper] apfmon messages muted
[2025-06-03 01:38:21] 2025-06-02 23:38:20,919 [wrapper] ==== wrapper stdout END ====
[2025-06-03 01:38:21] 2025-06-02 23:38:20,937 [wrapper] ==== wrapper stderr END ====
[2025-06-03 01:38:21]  *** Error codes and diagnostics ***
[2025-06-03 01:38:21]     "exeErrorCode": 0,
[2025-06-03 01:38:21]     "exeErrorDiag": "",
[2025-06-03 01:38:21]     "pilotErrorCode": 0,
[2025-06-03 01:38:21]     "pilotErrorDiag": "",
[2025-06-03 01:38:21]  *** Listing of results directory ***
[2025-06-03 01:38:21] total 422984
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc    495897 May 27 08:07 pilot3.tar.gz
[2025-06-03 01:38:21] -rwx------. 1 boinc boinc     37140 May 27 08:39 runpilot2-wrapper.sh
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc      5111 May 27 08:39 queuedata.json
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc       100 Jun  2 20:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 01:38:21] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 20:05 run_atlas
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc       105 Jun  2 20:05 job.xml
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc      6391 Jun  2 20:05 init_data.xml
[2025-06-03 01:38:21] -rw-r--r--. 2 boinc boinc 226524275 Jun  2 20:05 EVNT.44871834._002507.pool.root.1
[2025-06-03 01:38:21] -rw-r--r--. 2 boinc boinc     15093 Jun  2 20:05 start_atlas.sh
[2025-06-03 01:38:21] drwxrwx--x. 2 boinc boinc        68 Jun  2 20:05 shared
[2025-06-03 01:38:21] -rw-r--r--. 2 boinc boinc    508874 Jun  2 20:05 input.tar.gz
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc         0 Jun  2 20:05 boinc_lockfile
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc      2558 Jun  2 20:05 pandaJob.out
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc    988298 Jun  2 20:08 agis_schedconf.cvmfs.json
[2025-06-03 01:38:21] drwx------. 4 boinc boinc      4096 Jun  2 20:09 pilot3
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc 198610396 Jun  3 01:37 HITS.44871837._063569.pool.root.1
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc       531 Jun  3 01:37 boinc_task_state.xml
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc      1020 Jun  3 01:37 memory_monitor_summary.json
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc   1603667 Jun  3 01:37 agis_ddmendpoints.agis.ALL.json
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc        95 Jun  3 01:37 pilot_heartbeat.json
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc    425772 Jun  3 01:37 log.44871837._063569.job.log.tgz.1
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc      7693 Jun  3 01:38 heartbeat.json
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc      8192 Jun  3 01:38 boinc_mmap_file
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc        28 Jun  3 01:38 wrapper_checkpoint.txt
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc      4674 Jun  3 01:38 pilotlog.txt
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc   1667436 Jun  3 01:38 log.44871837._063569.job.log.1
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc       357 Jun  3 01:38 output.list
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc       620 Jun  3 01:38 runtime_log
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc   2109440 Jun  3 01:38 result.tar.gz
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc      8659 Jun  3 01:38 runtime_log.err
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc       657 Jun  3 01:38 mN9NDmy82d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBTRKDmKajS9m.diag
[2025-06-03 01:38:21] -rw-r--r--. 1 boinc boinc     20478 Jun  3 01:38 stderr.txt
[2025-06-03 01:38:21] HITS file was successfully produced:
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc 198610396 Jun  3 01:37 shared/HITS.pool.root.1
[2025-06-03 01:38:21]  *** Contents of shared directory: ***
[2025-06-03 01:38:21] total 417748
[2025-06-03 01:38:21] -rw-r--r--. 2 boinc boinc 226524275 Jun  2 20:05 ATLAS.root_0
[2025-06-03 01:38:21] -rw-r--r--. 2 boinc boinc     15093 Jun  2 20:05 start_atlas.sh
[2025-06-03 01:38:21] -rw-r--r--. 2 boinc boinc    508874 Jun  2 20:05 input.tar.gz
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc 198610396 Jun  3 01:37 HITS.pool.root.1
[2025-06-03 01:38:21] -rw-------. 1 boinc boinc   2109440 Jun  3 01:38 result.tar.gz
01:38:22 (29683): run_atlas exited; CPU time 72247.044844
01:38:22 (29683): called boinc_finish(0)

</stderr_txt>
]]>

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