Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:21:55 (32569): wrapper (7.7.26015): starting
20:21:55 (32569): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 20:21:55] Arguments: --nthreads 8
[2025-06-02 20:21:55] Threads: 8
[2025-06-02 20:21:55] Checking for CVMFS
[2025-06-02 20:21:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 20:21:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 20:21:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 20:21:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 20:21:57] 2.11.2.0 23601 30697 99264 146716 1 107 17947400 25165825 4343 130560 0 15757132 99.802 17947076 2107 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 20:21:57] CVMFS is ok
[2025-06-02 20:21:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 20:21:57] Checking for apptainer binary...
[2025-06-02 20:21:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 20:21:57] Running /usr/bin/apptainer --version
[2025-06-02 20:21:57] apptainer version 1.3.2-1.el7
[2025-06-02 20:21:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 20:22:00] cg-vwn275.simple-grid.lan
[2025-06-02 20:22:00] apptainer works
[2025-06-02 20:22:00] Set ATHENA_PROC_NUMBER=8
[2025-06-02 20:22:00] Set ATHENA_CORE_NUMBER=8
[2025-06-02 20:22:00] Starting ATLAS job with PandaID=6677384401
[2025-06-02 20:22:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 00:00:41]  *** The last 200 lines of the pilot log: ***
[2025-06-03 00:00:41] 2025-06-02 21:59:34,853 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 00:00:41] 2025-06-02 21:59:34,853 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 00:00:41] 2025-06-02 21:59:34,854 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 00:00:41] 2025-06-02 21:59:34,854 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 00:00:41] 2025-06-02 21:59:34,859 | INFO     | fitting pss+swap vs Time
[2025-06-03 00:00:41] 2025-06-02 21:59:34,860 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,862 | INFO     | sum of deviations: -31006195080.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,862 | INFO     | mean x: 1748895064.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,862 | INFO     | mean y: 2512367.248826291
[2025-06-03 00:00:41] 2025-06-02 21:59:34,862 | INFO     | -- intersect: 18099428155.58604
[2025-06-03 00:00:41] 2025-06-02 21:59:34,862 | INFO     | intersect: 18099428155.58604
[2025-06-03 00:00:41] 2025-06-02 21:59:34,862 | INFO     | chi2: 2.7870889017376985
[2025-06-03 00:00:41] 2025-06-02 21:59:34,863 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,864 | INFO     | sum of deviations: -15870591551.999998
[2025-06-03 00:00:41] 2025-06-02 21:59:34,865 | INFO     | mean x: 1748894911.5
[2025-06-03 00:00:41] 2025-06-02 21:59:34,865 | INFO     | mean y: 2523368.8365384615
[2025-06-03 00:00:41] 2025-06-02 21:59:34,865 | INFO     | -- intersect: 9949668131.699299
[2025-06-03 00:00:41] 2025-06-02 21:59:34,865 | INFO     | intersect: 9949668131.699299
[2025-06-03 00:00:41] 2025-06-02 21:59:34,865 | INFO     | chi2: 2.023291519648436
[2025-06-03 00:00:41] 2025-06-02 21:59:34,865 | INFO     | current chi2=2.023291519648436 (change=27.40484458938677 %)
[2025-06-03 00:00:41] 2025-06-02 21:59:34,866 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,867 | INFO     | sum of deviations: -15015780739.999998
[2025-06-03 00:00:41] 2025-06-02 21:59:34,868 | INFO     | mean x: 1748894759.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,868 | INFO     | mean y: 2524032.591133005
[2025-06-03 00:00:41] 2025-06-02 21:59:34,868 | INFO     | -- intersect: 10126604670.216805
[2025-06-03 00:00:41] 2025-06-02 21:59:34,868 | INFO     | intersect: 10126604670.216805
[2025-06-03 00:00:41] 2025-06-02 21:59:34,868 | INFO     | chi2: 2.022618873982899
[2025-06-03 00:00:41] 2025-06-02 21:59:34,868 | INFO     | current chi2=2.022618873982899 (change=0.033245118610179196 %)
[2025-06-03 00:00:41] 2025-06-02 21:59:34,868 | INFO     | right removable region: 202
[2025-06-03 00:00:41] 2025-06-02 21:59:34,869 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,871 | INFO     | sum of deviations: -70605243518.49998
[2025-06-03 00:00:41] 2025-06-02 21:59:34,871 | INFO     | mean x: 1748895216.5
[2025-06-03 00:00:41] 2025-06-02 21:59:34,871 | INFO     | mean y: 2541423.6009615385
[2025-06-03 00:00:41] 2025-06-02 21:59:34,871 | INFO     | -- intersect: 44255504426.04049
[2025-06-03 00:00:41] 2025-06-02 21:59:34,871 | INFO     | intersect: 44255504426.04049
[2025-06-03 00:00:41] 2025-06-02 21:59:34,872 | INFO     | chi2: 0.9967467728736564
[2025-06-03 00:00:41] 2025-06-02 21:59:34,872 | INFO     | current chi2=0.9967467728736564 (change=64.23699393829155 %)
[2025-06-03 00:00:41] 2025-06-02 21:59:34,872 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,874 | INFO     | sum of deviations: -67623020283.000015
[2025-06-03 00:00:41] 2025-06-02 21:59:34,874 | INFO     | mean x: 1748895369.0
[2025-06-03 00:00:41] 2025-06-02 21:59:34,874 | INFO     | mean y: 2539078.7339901477
[2025-06-03 00:00:41] 2025-06-02 21:59:34,875 | INFO     | -- intersect: 45595982466.679276
[2025-06-03 00:00:41] 2025-06-02 21:59:34,875 | INFO     | intersect: 45595982466.679276
[2025-06-03 00:00:41] 2025-06-02 21:59:34,875 | INFO     | chi2: 0.9869719813232206
[2025-06-03 00:00:41] 2025-06-02 21:59:34,875 | INFO     | current chi2=0.9869719813232206 (change=0.9806694956488036 %)
[2025-06-03 00:00:41] 2025-06-02 21:59:34,875 | INFO     | left removable region: 20
[2025-06-03 00:00:41] 2025-06-02 21:59:34,876 | INFO     | sum of square deviations: 1869302025.5
[2025-06-03 00:00:41] 2025-06-02 21:59:34,877 | INFO     | sum of deviations: -39299286630.5
[2025-06-03 00:00:41] 2025-06-02 21:59:34,877 | INFO     | mean x: 1748895338.5
[2025-06-03 00:00:41] 2025-06-02 21:59:34,877 | INFO     | mean y: 2542617.7527472526
[2025-06-03 00:00:41] 2025-06-02 21:59:34,877 | INFO     | -- intersect: 36770458265.87968
[2025-06-03 00:00:41] 2025-06-02 21:59:34,877 | INFO     | intersect: 36770458265.87968
[2025-06-03 00:00:41] 2025-06-02 21:59:34,878 | INFO     | chi2: 0.17994880764673452
[2025-06-03 00:00:41] 2025-06-02 21:59:34,878 | INFO     | -- intersect: 36770458265.87968
[2025-06-03 00:00:41] 2025-06-02 21:59:34,878 | INFO     | current memory leak: -21.02 B/s (using 182 data points, chi2=0.18)
[2025-06-03 00:00:41] 2025-06-02 21:59:34,879 | INFO     | ..............................
[2025-06-03 00:00:41] 2025-06-02 21:59:34,879 | INFO     | . Timing measurements:
[2025-06-03 00:00:41] 2025-06-02 21:59:34,879 | INFO     | . get job = 0 s
[2025-06-03 00:00:41] 2025-06-02 21:59:34,879 | INFO     | . initial setup = 2 s
[2025-06-03 00:00:41] 2025-06-02 21:59:34,879 | INFO     | . payload setup = 13 s
[2025-06-03 00:00:41] 2025-06-02 21:59:34,879 | INFO     | . stage-in = 0 s
[2025-06-03 00:00:41] 2025-06-02 21:59:34,880 | INFO     | . payload execution = 12968 s
[2025-06-03 00:00:41] 2025-06-02 21:59:34,880 | INFO     | . stage-out = 1 s
[2025-06-03 00:00:41] 2025-06-02 21:59:34,880 | INFO     | . log creation = 0 s
[2025-06-03 00:00:41] 2025-06-02 21:59:34,880 | INFO     | ..............................
[2025-06-03 00:00:41] 2025-06-02 21:59:35,132 | INFO     | PID=3893 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 00:00:41] 2025-06-02 21:59:35,132 | INFO     | .. there are 9 such processes running
[2025-06-03 00:00:41] 2025-06-02 21:59:35,133 | INFO     | 
[2025-06-03 00:00:41] 2025-06-02 21:59:35,133 | INFO     | job summary report
[2025-06-03 00:00:41] 2025-06-02 21:59:35,133 | INFO     | --------------------------------------------------
[2025-06-03 00:00:41] 2025-06-02 21:59:35,133 | INFO     | PanDA job id: 6677384401
[2025-06-03 00:00:41] 2025-06-02 21:59:35,133 | INFO     | task id: 45006595
[2025-06-03 00:00:41] 2025-06-02 21:59:35,133 | INFO     | errors: (none)
[2025-06-03 00:00:41] 2025-06-02 21:59:35,133 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | pilot state: finished 
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | transexitcode: 0
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | exeerrorcode: 0
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | exeerrordiag: 
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | exitcode: 0
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | exitmsg: OK
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | cpuconsumptiontime: 49119 s
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | nevents: 400
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | neventsw: 0
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | pid: 12449
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | pgrp: 12449
[2025-06-03 00:00:41] 2025-06-02 21:59:35,134 | INFO     | corecount: 8
[2025-06-03 00:00:41] 2025-06-02 21:59:35,135 | INFO     | event service: False
[2025-06-03 00:00:41] 2025-06-02 21:59:35,135 | INFO     | sizes: {0: 2405177, 1: 2405177, 9: 2405411, 12: 2405439, 12986: 2434811, 12988: 2443752, 12990: 2443936, 13012: 2444106}
[2025-06-03 00:00:41] 2025-06-02 21:59:35,135 | INFO     | --------------------------------------------------
[2025-06-03 00:00:41] 2025-06-02 21:59:35,135 | INFO     | 
[2025-06-03 00:00:41] 2025-06-02 21:59:35,135 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-03 00:00:41] 2025-06-02 21:59:35,164 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,164 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,164 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,164 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,164 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,164 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,164 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,165 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 00:00:41] 2025-06-02 21:59:35,166 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,166 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 00:00:41] 2025-06-02 21:59:35,166 | INFO     | job 6677384401 has completed (purged errors)
[2025-06-03 00:00:41] 2025-06-02 21:59:35,166 | INFO     | overall cleanup function is called
[2025-06-03 00:00:41] 2025-06-02 21:59:36,175 | INFO     | --- collectZombieJob: --- 10, [12449]
[2025-06-03 00:00:41] 2025-06-02 21:59:36,175 | INFO     | zombie collector waiting for pid 12449
[2025-06-03 00:00:41] 2025-06-02 21:59:36,176 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 00:00:41] 2025-06-02 21:59:36,176 | INFO     | collected zombie processes
[2025-06-03 00:00:41] 2025-06-02 21:59:36,176 | INFO     | will attempt to kill all subprocesses of pid=12449
[2025-06-03 00:00:41] 2025-06-02 21:59:36,294 | INFO     | process IDs to be killed: [12449] (in reverse order)
[2025-06-03 00:00:41] 2025-06-02 21:59:36,361 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 00:00:41] 2025-06-02 21:59:36,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 00:00:41] 2025-06-02 21:59:36,366 | INFO     | did not find any defunct processes belonging to 12449
[2025-06-03 00:00:41] 2025-06-02 21:59:36,369 | INFO     | did not find any defunct processes belonging to 12449
[2025-06-03 00:00:41] 2025-06-02 21:59:36,370 | INFO     | ready for new job
[2025-06-03 00:00:41] 2025-06-02 21:59:36,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 00:00:41] 2025-06-02 21:59:36,372 | INFO     | **************************************
[2025-06-03 00:00:41] 2025-06-02 21:59:36,372 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 00:00:41] 2025-06-02 21:59:36,373 | INFO     | **************************************
[2025-06-03 00:00:41] 2025-06-02 21:59:36,373 | INFO     | 
[2025-06-03 00:00:41] 2025-06-02 21:59:36,373 | INFO     | pilot is running in a VM
[2025-06-03 00:00:41] 2025-06-02 21:59:36,373 | INFO     | architecture information:
[2025-06-03 00:00:41] 2025-06-02 21:59:36,377 | INFO     | executing command: cat /etc/os-release
[2025-06-03 00:00:41] 2025-06-02 21:59:36,404 | INFO     | cat /etc/os-release:
[2025-06-03 00:00:41] NAME="CentOS Linux"
[2025-06-03 00:00:41] VERSION="7 (Core)"
[2025-06-03 00:00:41] ID="centos"
[2025-06-03 00:00:41] ID_LIKE="rhel fedora"
[2025-06-03 00:00:41] VERSION_ID="7"
[2025-06-03 00:00:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 00:00:41] ANSI_COLOR="0;31"
[2025-06-03 00:00:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 00:00:41] HOME_URL="https://www.centos.org/"
[2025-06-03 00:00:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 00:00:41] 
[2025-06-03 00:00:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 00:00:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 00:00:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 00:00:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 00:00:41] 
[2025-06-03 00:00:41] 2025-06-02 21:59:36,404 | INFO     | **************************************
[2025-06-03 00:00:41] 2025-06-02 21:59:36,906 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-03 00:00:41] 2025-06-02 21:59:36,939 | INFO     | sufficient remaining disk space (497165533184 B)
[2025-06-03 00:00:41] 2025-06-02 21:59:36,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 00:00:41] 2025-06-02 21:59:36,941 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 00:00:41] 2025-06-02 21:59:36,942 | INFO     | update_server=False
[2025-06-03 00:00:41] 2025-06-02 21:59:36,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 00:00:41] 2025-06-02 21:59:36,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 00:00:41] 2025-06-02 21:59:36,942 | INFO     | aborting loop
[2025-06-03 00:00:41] 2025-06-02 21:59:36,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 00:00:41] 2025-06-02 21:59:36,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 00:00:41] 2025-06-02 21:59:37,141 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 00:00:41] 2025-06-02 21:59:37,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 00:00:41] 2025-06-02 21:59:37,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 00:00:41] 2025-06-02 21:59:37,267 | INFO     | all data control threads have been joined
[2025-06-03 00:00:41] 2025-06-02 21:59:37,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 00:00:41] 2025-06-02 21:59:37,947 | INFO     | [job] retrieve thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:37,948 | INFO     | [job] job monitor thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:37,951 | INFO     | [job] queue monitor thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:38,114 | INFO     | all job control threads have been joined
[2025-06-03 00:00:41] 2025-06-02 21:59:38,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:38,193 | INFO     | all payload control threads have been joined
[2025-06-03 00:00:41] 2025-06-02 21:59:38,273 | INFO     | [data] control thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:38,339 | INFO     | [job] validate thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:38,497 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:38,575 | INFO     | [data] copytool_in thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:38,738 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:38,950 | INFO     | [data] copytool_out thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:39,119 | INFO     | [job] control thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:39,199 | INFO     | [payload] control thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:39,220 | INFO     | [payload] failed_post thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:39,268 | INFO     | [payload] validate_post thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:39,364 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:41,923 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 00:00:41] 2025-06-02 21:59:43,710 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139866743965504)>', '<ExcThread(monitor, started 139866432050944)>']
[2025-06-03 00:00:41] 2025-06-02 21:59:44,183 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 00:00:41] 2025-06-02 21:59:44,183 | INFO     | [monitor] control thread has ended
[2025-06-03 00:00:41] 2025-06-02 21:59:48,736 | INFO     | all workflow threads have been joined
[2025-06-03 00:00:41] 2025-06-02 21:59:48,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 00:00:41] 2025-06-02 21:59:48,737 | INFO     | traces error code: 0
[2025-06-03 00:00:41] 2025-06-02 21:59:48,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 00:00:41] 2025-06-02 21:59:48,982 [wrapper] ==== pilot stdout END ====
[2025-06-03 00:00:41] 2025-06-02 21:59:49,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 00:00:41] 2025-06-02 21:59:49,157 [wrapper] pilotpid: 3893
[2025-06-03 00:00:41] 2025-06-02 21:59:49,293 [wrapper] Pilot exit status: 0
[2025-06-03 00:00:41] 2025-06-02 21:59:49,613 [wrapper] pandaids: 6677384401
[2025-06-03 00:00:41] 2025-06-02 21:59:50,009 [wrapper] cleanup supervisor_pilot 23316 3894
[2025-06-03 00:00:41] 2025-06-02 21:59:50,068 [wrapper] Test setup, not cleaning
[2025-06-03 00:00:41] 2025-06-02 21:59:50,087 [wrapper] apfmon messages muted
[2025-06-03 00:00:41] 2025-06-02 21:59:50,099 [wrapper] ==== wrapper stdout END ====
[2025-06-03 00:00:41] 2025-06-02 21:59:50,168 [wrapper] ==== wrapper stderr END ====
[2025-06-03 00:00:41]  *** Error codes and diagnostics ***
[2025-06-03 00:00:41]     "exeErrorCode": 0,
[2025-06-03 00:00:41]     "exeErrorDiag": "",
[2025-06-03 00:00:41]     "pilotErrorCode": 0,
[2025-06-03 00:00:41]     "pilotErrorDiag": "",
[2025-06-03 00:00:41]  *** Listing of results directory ***
[2025-06-03 00:00:41] total 395748
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc    495897 Jun  2 18:40 pilot3.tar.gz
[2025-06-03 00:00:41] -rwx------. 1 boinc boinc     37140 Jun  2 18:45 runpilot2-wrapper.sh
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc      5111 Jun  2 18:45 queuedata.json
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc       100 Jun  2 20:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 00:00:41] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 20:21 run_atlas
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc       105 Jun  2 20:21 job.xml
[2025-06-03 00:00:41] -rw-r--r--. 2 boinc boinc 218087333 Jun  2 20:21 EVNT.45006593._000169.pool.root.1
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc      6390 Jun  2 20:21 init_data.xml
[2025-06-03 00:00:41] -rw-r--r--. 2 boinc boinc     15093 Jun  2 20:21 start_atlas.sh
[2025-06-03 00:00:41] drwxrwx--x. 2 boinc boinc        68 Jun  2 20:21 shared
[2025-06-03 00:00:41] -rw-r--r--. 2 boinc boinc    508875 Jun  2 20:21 input.tar.gz
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc         0 Jun  2 20:21 boinc_lockfile
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc      2521 Jun  2 20:22 pandaJob.out
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc    988298 Jun  2 20:22 agis_schedconf.cvmfs.json
[2025-06-03 00:00:41] drwx------. 4 boinc boinc      4096 Jun  2 20:22 pilot3
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc 180306756 Jun  2 23:58 HITS.45006595._004221.pool.root.1
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc       531 Jun  2 23:58 boinc_task_state.xml
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc        95 Jun  2 23:58 pilot_heartbeat.json
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc      1018 Jun  2 23:59 memory_monitor_summary.json
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc   1603667 Jun  2 23:59 agis_ddmendpoints.agis.ALL.json
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc    384075 Jun  2 23:59 log.45006595._004221.job.log.tgz.1
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc      7690 Jun  2 23:59 heartbeat.json
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc      4416 Jun  2 23:59 pilotlog.txt
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc   1128946 Jun  2 23:59 log.45006595._004221.job.log.1
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc       357 Jun  2 23:59 output.list
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc       620 Jun  2 23:59 runtime_log
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc   1536000 Jun  2 23:59 result.tar.gz
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc      8659 Jun  2 23:59 runtime_log.err
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc       656 Jun  2 23:59 H1LODmvSNg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHUfKDmdnvu7m.diag
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc      8192 Jun  3 00:00 boinc_mmap_file
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc        28 Jun  3 00:00 wrapper_checkpoint.txt
[2025-06-03 00:00:41] -rw-r--r--. 1 boinc boinc     20545 Jun  3 00:00 stderr.txt
[2025-06-03 00:00:41] HITS file was successfully produced:
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc 180306756 Jun  2 23:58 shared/HITS.pool.root.1
[2025-06-03 00:00:41]  *** Contents of shared directory: ***
[2025-06-03 00:00:41] total 391076
[2025-06-03 00:00:41] -rw-r--r--. 2 boinc boinc 218087333 Jun  2 20:21 ATLAS.root_0
[2025-06-03 00:00:41] -rw-r--r--. 2 boinc boinc     15093 Jun  2 20:21 start_atlas.sh
[2025-06-03 00:00:41] -rw-r--r--. 2 boinc boinc    508875 Jun  2 20:21 input.tar.gz
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc 180306756 Jun  2 23:58 HITS.pool.root.1
[2025-06-03 00:00:41] -rw-------. 1 boinc boinc   1536000 Jun  2 23:59 result.tar.gz
00:00:43 (32569): run_atlas exited; CPU time 49285.638065
00:00:43 (32569): called boinc_finish(0)

</stderr_txt>
]]>

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