Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:12:46 (10144): wrapper (7.7.26015): starting
04:12:46 (10144): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 04:12:46] Arguments: --nthreads 8
[2025-06-03 04:12:46] Threads: 8
[2025-06-03 04:12:46] Checking for CVMFS
[2025-06-03 04:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 04:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 04:12:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 04:12:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 04:12:48] 2.11.2.0 23601 31168 98640 146724 3 16 18251118 25165824 4635 130560 0 16103502 99.806 18076555 2113 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 04:12:48] CVMFS is ok
[2025-06-03 04:12:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 04:12:48] Checking for apptainer binary...
[2025-06-03 04:12:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 04:12:48] Running /usr/bin/apptainer --version
[2025-06-03 04:12:49] apptainer version 1.3.2-1.el7
[2025-06-03 04:12:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 04:12:58] cg-vwn275.simple-grid.lan
[2025-06-03 04:12:58] apptainer works
[2025-06-03 04:12:58] Set ATHENA_PROC_NUMBER=8
[2025-06-03 04:12:58] Set ATHENA_CORE_NUMBER=8
[2025-06-03 04:12:58] Starting ATLAS job with PandaID=6677379781
[2025-06-03 04:12:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:48:48]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:48:48] 2025-06-03 06:08:09,551 | INFO     | extracted standard info from prmon json
[2025-06-03 12:48:48] 2025-06-03 06:08:09,551 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:48:48] 2025-06-03 06:08:09,551 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:48:48] 2025-06-03 06:08:09,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:48:48] 2025-06-03 06:08:09,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:48:48] 2025-06-03 06:08:09,556 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:48:48] 2025-06-03 06:08:09,557 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,559 | INFO     | sum of deviations: 15145934061.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,559 | INFO     | mean x: 1748924136.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,559 | INFO     | mean y: 2502703.515981735
[2025-06-03 12:48:48] 2025-06-03 06:08:09,559 | INFO     | -- intersect: -8130769730.693231
[2025-06-03 12:48:48] 2025-06-03 06:08:09,559 | INFO     | intersect: -8130769730.693231
[2025-06-03 12:48:48] 2025-06-03 06:08:09,560 | INFO     | chi2: 8.813472191906703
[2025-06-03 12:48:48] 2025-06-03 06:08:09,560 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 12:48:48] 2025-06-03 06:08:09,562 | INFO     | sum of deviations: 45990040459.500046
[2025-06-03 12:48:48] 2025-06-03 06:08:09,562 | INFO     | mean x: 1748923983.5
[2025-06-03 12:48:48] 2025-06-03 06:08:09,562 | INFO     | mean y: 2523993.929906542
[2025-06-03 12:48:48] 2025-06-03 06:08:09,563 | INFO     | -- intersect: -26465679464.57096
[2025-06-03 12:48:48] 2025-06-03 06:08:09,563 | INFO     | intersect: -26465679464.57096
[2025-06-03 12:48:48] 2025-06-03 06:08:09,563 | INFO     | chi2: 7.297036406662359
[2025-06-03 12:48:48] 2025-06-03 06:08:09,563 | INFO     | current chi2=7.297036406662359 (change=17.205883813156717 %)
[2025-06-03 12:48:48] 2025-06-03 06:08:09,563 | INFO     | right removable region: 213
[2025-06-03 12:48:48] 2025-06-03 06:08:09,564 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 12:48:48] 2025-06-03 06:08:09,565 | INFO     | sum of deviations: -63007342585.50001
[2025-06-03 12:48:48] 2025-06-03 06:08:09,566 | INFO     | mean x: 1748924288.5
[2025-06-03 12:48:48] 2025-06-03 06:08:09,566 | INFO     | mean y: 2557327.238317757
[2025-06-03 12:48:48] 2025-06-03 06:08:09,566 | INFO     | -- intersect: 36264570517.565025
[2025-06-03 12:48:48] 2025-06-03 06:08:09,566 | INFO     | intersect: 36264570517.565025
[2025-06-03 12:48:48] 2025-06-03 06:08:09,566 | INFO     | chi2: 3.803582336356624
[2025-06-03 12:48:48] 2025-06-03 06:08:09,566 | INFO     | current chi2=3.803582336356624 (change=56.84354300397744 %)
[2025-06-03 12:48:48] 2025-06-03 06:08:09,567 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,568 | INFO     | sum of deviations: -108462029232.99994
[2025-06-03 12:48:48] 2025-06-03 06:08:09,569 | INFO     | mean x: 1748924441.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,569 | INFO     | mean y: 2590500.6602870813
[2025-06-03 12:48:48] 2025-06-03 06:08:09,569 | INFO     | -- intersect: 67012870509.78187
[2025-06-03 12:48:48] 2025-06-03 06:08:09,569 | INFO     | intersect: 67012870509.78187
[2025-06-03 12:48:48] 2025-06-03 06:08:09,569 | INFO     | chi2: 1.9539328965197194
[2025-06-03 12:48:48] 2025-06-03 06:08:09,569 | INFO     | current chi2=1.9539328965197194 (change=48.62914158994247 %)
[2025-06-03 12:48:48] 2025-06-03 06:08:09,570 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,571 | INFO     | sum of deviations: -112238427755.49998
[2025-06-03 12:48:48] 2025-06-03 06:08:09,572 | INFO     | mean x: 1748924593.5
[2025-06-03 12:48:48] 2025-06-03 06:08:09,572 | INFO     | mean y: 2593347.2696078434
[2025-06-03 12:48:48] 2025-06-03 06:08:09,572 | INFO     | -- intersect: 74570880767.34799
[2025-06-03 12:48:48] 2025-06-03 06:08:09,572 | INFO     | intersect: 74570880767.34799
[2025-06-03 12:48:48] 2025-06-03 06:08:09,572 | INFO     | chi2: 1.866462354903438
[2025-06-03 12:48:48] 2025-06-03 06:08:09,572 | INFO     | current chi2=1.866462354903438 (change=4.476639999873125 %)
[2025-06-03 12:48:48] 2025-06-03 06:08:09,573 | INFO     | left removable region: 30
[2025-06-03 12:48:48] 2025-06-03 06:08:09,573 | INFO     | sum of square deviations: 1900284932.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,574 | INFO     | sum of deviations: -69558690887.99998
[2025-06-03 12:48:48] 2025-06-03 06:08:09,574 | INFO     | mean x: 1748924868.0
[2025-06-03 12:48:48] 2025-06-03 06:08:09,574 | INFO     | mean y: 2609679.6885245903
[2025-06-03 12:48:48] 2025-06-03 06:08:09,575 | INFO     | -- intersect: 64020864116.67533
[2025-06-03 12:48:48] 2025-06-03 06:08:09,575 | INFO     | intersect: 64020864116.67533
[2025-06-03 12:48:48] 2025-06-03 06:08:09,575 | INFO     | chi2: 0.15925617490933056
[2025-06-03 12:48:48] 2025-06-03 06:08:09,575 | INFO     | -- intersect: 64020864116.67533
[2025-06-03 12:48:48] 2025-06-03 06:08:09,575 | INFO     | current memory leak: -36.60 B/s (using 183 data points, chi2=0.16)
[2025-06-03 12:48:48] 2025-06-03 06:08:09,576 | INFO     | ..............................
[2025-06-03 12:48:48] 2025-06-03 06:08:09,576 | INFO     | . Timing measurements:
[2025-06-03 12:48:48] 2025-06-03 06:08:09,576 | INFO     | . get job = 0 s
[2025-06-03 12:48:48] 2025-06-03 06:08:09,576 | INFO     | . initial setup = 5 s
[2025-06-03 12:48:48] 2025-06-03 06:08:09,576 | INFO     | . payload setup = 170 s
[2025-06-03 12:48:48] 2025-06-03 06:08:09,577 | INFO     | . stage-in = 0 s
[2025-06-03 12:48:48] 2025-06-03 06:08:09,577 | INFO     | . payload execution = 13458 s
[2025-06-03 12:48:48] 2025-06-03 06:08:09,577 | INFO     | . stage-out = 3 s
[2025-06-03 12:48:48] 2025-06-03 06:08:09,577 | INFO     | . log creation = 1 s
[2025-06-03 12:48:48] 2025-06-03 06:08:09,577 | INFO     | ..............................
[2025-06-03 12:48:48] 2025-06-03 06:08:10,003 | INFO     | 
[2025-06-03 12:48:48] 2025-06-03 06:08:10,003 | INFO     | job summary report
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | --------------------------------------------------
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | PanDA job id: 6677379781
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | task id: 45006595
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | errors: (none)
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | pilot state: finished 
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | transexitcode: 0
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | exeerrorcode: 0
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | exeerrordiag: 
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | exitcode: 0
[2025-06-03 12:48:48] 2025-06-03 06:08:10,004 | INFO     | exitmsg: OK
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | cpuconsumptiontime: 49670 s
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | nevents: 400
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | neventsw: 0
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | pid: 26438
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | pgrp: 26438
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | corecount: 8
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | event service: False
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | sizes: {0: 2404348, 1: 2405033, 2: 2405232, 13: 2405232, 23: 2405288, 34: 2405316, 45: 2405472, 56: 2405500, 67: 2405528, 78: 2405556, 88: 2405612, 91: 2406126, 99
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | --------------------------------------------------
[2025-06-03 12:48:48] 2025-06-03 06:08:10,005 | INFO     | 
[2025-06-03 12:48:48] 2025-06-03 06:08:10,006 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-03 12:48:48] 2025-06-03 06:08:10,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,405 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,405 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,405 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:48:48] 2025-06-03 06:08:10,405 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,405 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:48:48] 2025-06-03 06:08:10,405 | INFO     | job 6677379781 has completed (purged errors)
[2025-06-03 12:48:48] 2025-06-03 06:08:10,405 | INFO     | overall cleanup function is called
[2025-06-03 12:48:48] 2025-06-03 06:08:11,414 | INFO     | --- collectZombieJob: --- 10, [26438]
[2025-06-03 12:48:48] 2025-06-03 06:08:11,414 | INFO     | zombie collector waiting for pid 26438
[2025-06-03 12:48:48] 2025-06-03 06:08:11,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:48:48] 2025-06-03 06:08:11,415 | INFO     | collected zombie processes
[2025-06-03 12:48:48] 2025-06-03 06:08:11,415 | INFO     | will attempt to kill all subprocesses of pid=26438
[2025-06-03 12:48:48] 2025-06-03 06:08:11,513 | INFO     | process IDs to be killed: [26438] (in reverse order)
[2025-06-03 12:48:48] 2025-06-03 06:08:12,057 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:48:48] 2025-06-03 06:08:12,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:48:48] 2025-06-03 06:08:12,061 | INFO     | did not find any defunct processes belonging to 26438
[2025-06-03 12:48:48] 2025-06-03 06:08:12,064 | INFO     | did not find any defunct processes belonging to 26438
[2025-06-03 12:48:48] 2025-06-03 06:08:12,064 | INFO     | ready for new job
[2025-06-03 12:48:48] 2025-06-03 06:08:12,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:48:48] 2025-06-03 06:08:12,066 | INFO     | **************************************
[2025-06-03 12:48:48] 2025-06-03 06:08:12,066 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:48:48] 2025-06-03 06:08:12,066 | INFO     | **************************************
[2025-06-03 12:48:48] 2025-06-03 06:08:12,067 | INFO     | 
[2025-06-03 12:48:48] 2025-06-03 06:08:12,067 | INFO     | pilot is running in a VM
[2025-06-03 12:48:48] 2025-06-03 06:08:12,067 | INFO     | architecture information:
[2025-06-03 12:48:48] 2025-06-03 06:08:12,074 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:48:48] 2025-06-03 06:08:12,188 | INFO     | cat /etc/os-release:
[2025-06-03 12:48:48] NAME="CentOS Linux"
[2025-06-03 12:48:48] VERSION="7 (Core)"
[2025-06-03 12:48:48] ID="centos"
[2025-06-03 12:48:48] ID_LIKE="rhel fedora"
[2025-06-03 12:48:48] VERSION_ID="7"
[2025-06-03 12:48:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:48:48] ANSI_COLOR="0;31"
[2025-06-03 12:48:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:48:48] HOME_URL="https://www.centos.org/"
[2025-06-03 12:48:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:48:48] 
[2025-06-03 12:48:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:48:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:48:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:48:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:48:48] 
[2025-06-03 12:48:48] 2025-06-03 06:08:12,188 | INFO     | **************************************
[2025-06-03 12:48:48] 2025-06-03 06:08:12,691 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-03 12:48:48] 2025-06-03 06:08:12,921 | INFO     | sufficient remaining disk space (496834183168 B)
[2025-06-03 12:48:48] 2025-06-03 06:08:12,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:48:48] 2025-06-03 06:08:12,921 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:48:48] 2025-06-03 06:08:12,922 | INFO     | update_server=False
[2025-06-03 12:48:48] 2025-06-03 06:08:12,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:48:48] 2025-06-03 06:08:12,929 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:48:48] 2025-06-03 06:08:12,930 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:48:48] 2025-06-03 06:08:12,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:48:48] 2025-06-03 06:08:12,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:48:48] 2025-06-03 06:08:13,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:48:48] 2025-06-03 06:08:13,172 | INFO     | aborting loop
[2025-06-03 12:48:48] 2025-06-03 06:08:13,340 | INFO     | all payload control threads have been joined
[2025-06-03 12:48:48] 2025-06-03 06:08:13,829 | INFO     | all data control threads have been joined
[2025-06-03 12:48:48] 2025-06-03 06:08:13,927 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,067 | INFO     | all job control threads have been joined
[2025-06-03 12:48:48] 2025-06-03 06:08:14,157 | INFO     | [job] validate thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,162 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,178 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:48:48] 2025-06-03 06:08:14,346 | INFO     | [payload] control thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,717 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,732 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,749 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:48:48] 2025-06-03 06:08:14,835 | INFO     | [data] control thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:14,839 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:15,072 | INFO     | [job] control thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:15,225 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:15,388 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:15,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:48:48] 2025-06-03 06:08:15,755 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:16,266 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:19,427 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:48:48] 2025-06-03 06:08:20,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140291901183808)>', '<ExcThread(monitor, started 140291298268928)>']
[2025-06-03 12:48:48] 2025-06-03 06:08:20,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:48:48] 2025-06-03 06:08:20,976 | INFO     | [monitor] control thread has ended
[2025-06-03 12:48:48] 2025-06-03 06:08:25,895 | INFO     | all workflow threads have been joined
[2025-06-03 12:48:48] 2025-06-03 06:08:25,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:48:48] 2025-06-03 06:08:25,896 | INFO     | traces error code: 0
[2025-06-03 12:48:48] 2025-06-03 06:08:25,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:48:48] 2025-06-03 06:08:26,360 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:48:48] 2025-06-03 06:08:26,462 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:48:48] 2025-06-03 06:08:26,559 [wrapper] pilotpid: 17764
[2025-06-03 12:48:48] 2025-06-03 06:08:26,653 [wrapper] Pilot exit status: 0
[2025-06-03 12:48:48] 2025-06-03 06:08:27,125 [wrapper] pandaids: 6677379781
[2025-06-03 12:48:48] 2025-06-03 06:08:27,652 [wrapper] cleanup supervisor_pilot   598 17765
[2025-06-03 12:48:48] 2025-06-03 06:08:27,781 [wrapper] Test setup, not cleaning
[2025-06-03 12:48:48] 2025-06-03 06:08:27,889 [wrapper] apfmon messages muted
[2025-06-03 12:48:48] 2025-06-03 06:08:27,996 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:48:48] 2025-06-03 06:08:28,040 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:48:48]  *** Error codes and diagnostics ***
[2025-06-03 12:48:48]     "exeErrorCode": 0,
[2025-06-03 12:48:48]     "exeErrorDiag": "",
[2025-06-03 12:48:48]     "pilotErrorCode": 0,
[2025-06-03 12:48:48]     "pilotErrorDiag": "",
[2025-06-03 12:48:48]  *** Listing of results directory ***
[2025-06-03 12:48:48] total 392080
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 12:48:48] -rwx------. 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:52 queuedata.json
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc       100 Jun  3 04:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:48:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 04:12 run_atlas
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc       105 Jun  3 04:12 job.xml
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc      6390 Jun  3 04:12 init_data.xml
[2025-06-03 12:48:48] -rw-r--r--. 2 boinc boinc 216501480 Jun  3 04:12 EVNT.45006593._000074.pool.root.1
[2025-06-03 12:48:48] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:12 start_atlas.sh
[2025-06-03 12:48:48] drwxrwx--x. 2 boinc boinc        68 Jun  3 04:12 shared
[2025-06-03 12:48:48] -rw-r--r--. 2 boinc boinc    508869 Jun  3 04:12 input.tar.gz
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc         0 Jun  3 04:12 boinc_lockfile
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc      2521 Jun  3 04:12 pandaJob.out
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc    988073 Jun  3 04:16 agis_schedconf.cvmfs.json
[2025-06-03 12:48:48] drwx------. 4 boinc boinc      4096 Jun  3 04:16 pilot3
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc 178034801 Jun  3 08:05 HITS.45006595._001839.pool.root.1
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc       531 Jun  3 08:05 boinc_task_state.xml
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc      1012 Jun  3 08:06 memory_monitor_summary.json
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc   1603667 Jun  3 08:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc    381730 Jun  3 08:06 log.45006595._001839.job.log.tgz.1
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc        95 Jun  3 08:07 pilot_heartbeat.json
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc      7685 Jun  3 08:08 heartbeat.json
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc      4539 Jun  3 08:08 pilotlog.txt
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc   1181914 Jun  3 08:08 log.45006595._001839.job.log.1
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc       357 Jun  3 08:08 output.list
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc       620 Jun  3 08:08 runtime_log
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc   1587200 Jun  3 08:08 result.tar.gz
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc      8659 Jun  3 08:08 runtime_log.err
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc       656 Jun  3 08:08 MzsKDmCcMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmsdVKDmVcJwFm.diag
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc      8192 Jun  3 12:48 boinc_mmap_file
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc        28 Jun  3 12:48 wrapper_checkpoint.txt
[2025-06-03 12:48:48] -rw-r--r--. 1 boinc boinc     20265 Jun  3 12:48 stderr.txt
[2025-06-03 12:48:48] HITS file was successfully produced:
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc 178034801 Jun  3 08:05 shared/HITS.pool.root.1
[2025-06-03 12:48:48]  *** Contents of shared directory: ***
[2025-06-03 12:48:48] total 387360
[2025-06-03 12:48:48] -rw-r--r--. 2 boinc boinc 216501480 Jun  3 04:12 ATLAS.root_0
[2025-06-03 12:48:48] -rw-r--r--. 2 boinc boinc     15093 Jun  3 04:12 start_atlas.sh
[2025-06-03 12:48:48] -rw-r--r--. 2 boinc boinc    508869 Jun  3 04:12 input.tar.gz
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc 178034801 Jun  3 08:05 HITS.pool.root.1
[2025-06-03 12:48:48] -rw-------. 1 boinc boinc   1587200 Jun  3 08:08 result.tar.gz
12:48:50 (10144): run_atlas exited; CPU time 49856.555047
12:48:50 (10144): called boinc_finish(0)

</stderr_txt>
]]>

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