Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:24:56 (583134): wrapper (7.7.26015): starting
10:24:56 (583134): wrapper: running run_atlas (--nthreads 12)
[2025-06-02 10:24:56] Arguments: --nthreads 12
[2025-06-02 10:24:56] Threads: 12
[2025-06-02 10:24:56] Checking for CVMFS
[2025-06-02 10:24:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 10:24:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 10:24:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 10:24:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 10:24:57] 2.11.5.0 2633 48310 236988 146714 0 829 38918497 45568001 13174 130560 0 397567343 99.786 274858998 23853 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-02 10:24:57] CVMFS is ok
[2025-06-02 10:24:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 10:24:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 10:24:57] Further information can be found at the LHC@home message board.
[2025-06-02 10:24:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 10:24:57] Checking for apptainer binary...
[2025-06-02 10:24:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 10:24:57] Running /usr/bin/apptainer --version
[2025-06-02 10:24:57] apptainer version 1.4.0-1.el9
[2025-06-02 10:24:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 10:24:57] wns0112.triumf.lcg
[2025-06-02 10:24:57] apptainer works
[2025-06-02 10:24:57] Set ATHENA_PROC_NUMBER=12
[2025-06-02 10:24:57] Set ATHENA_CORE_NUMBER=12
[2025-06-02 10:24:57] Starting ATLAS job with PandaID=6677383075
[2025-06-02 10:24:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 10:28:10]  *** The last 200 lines of the pilot log: ***
[2025-06-02 10:28:10] 2025-06-02 17:27:57,453 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | found no stored workdir sizes
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | INFO     | will not add max space = 0 B to job metrics
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | WARNING  | wrong length of table data, x=[1748885130.0], y=[1592.0] (must be same and length>=4)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | ..............................
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . Timing measurements:
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . get job = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . initial setup = 2 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . payload setup = 5 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . stage-in = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . payload execution = 16 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . stage-out = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . log creation = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | ..............................
[2025-06-02 10:28:10] 2025-06-02 17:27:57,456 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-02 10:28:10] 2025-06-02 17:27:57,456 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677383075/pilotlog.txt
[2025-06-02 10:28:10] 2025-06-02 17:27:57,524 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-02 10:28:10] - Log from pilotlog.txt -
[2025-06-02 10:28:10] 2025-06-02 17:27:57,453 | INFO     | extracted standard info from prmon json
[2025-06-02 10:28:10] 2025-06-02 17:27:57,453 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | found no stored workdir sizes
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | INFO     | will not add max space = 0 B to job metrics
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | WARNING  | wrong length of table data, x=[1748885130.0], y=[1592.0] (must be same and length>=4)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | ..............................
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . Timing measurements:
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . get job = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . initial setup = 2 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . payload setup = 5 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . stage-in = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . payload execution = 16 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . stage-out = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . log creation = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | ..............................
[2025-06-02 10:28:10] 2025-06-02 17:27:57,456 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-02 10:28:10] 2025-06-02 17:27:57,456 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677383075/pilotlog.txt
[2025-06-02 10:28:10] 2025-06-02 17:27:57,542 | WARNING  | 
[2025-06-02 10:28:10] [begin log extracts]
[2025-06-02 10:28:10] - Log from pilotlog.txt -
[2025-06-02 10:28:10] 2025-06-02 17:27:57,453 | INFO     | extracted standard info from prmon json
[2025-06-02 10:28:10] 2025-06-02 17:27:57,453 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | WARNING  | found no stored workdir sizes
[2025-06-02 10:28:10] 2025-06-02 17:27:57,454 | INFO     | will not add max space = 0 B to job metrics
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | WARNING  | wrong length of table data, x=[1748885130.0], y=[1592.0] (must be same and length>=4)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | ..............................
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . Timing measurements:
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . get job = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . initial setup = 2 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . payload setup = 5 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . stage-in = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . payload execution = 16 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . stage-out = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | . log creation = 0 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,455 | INFO     | ..............................
[2025-06-02 10:28:10] 2025-06-02 17:27:57,456 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-02 10:28:10] 2025-06-02 17:27:57,456 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677383075/pilotlog.txt
[2025-06-02 10:28:10] [end log extracts]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,542 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,543 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-02 10:28:10] 2025-06-02 17:27:57,648 | INFO     | 
[2025-06-02 10:28:10] 2025-06-02 17:27:57,648 | INFO     | job summary report
[2025-06-02 10:28:10] 2025-06-02 17:27:57,648 | INFO     | --------------------------------------------------
[2025-06-02 10:28:10] 2025-06-02 17:27:57,648 | INFO     | PanDA job id: 6677383075
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | task id: 45006595
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-02 10:25:38,866 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | pilot state: failed 
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | transexitcode: 65
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | exeerrorcode: 65
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | exitcode: 65
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | cpuconsumptiontime: 19 s
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | nevents: 0
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | neventsw: 0
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | pid: 598925
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | pgrp: 598925
[2025-06-02 10:28:10] 2025-06-02 17:27:57,649 | INFO     | corecount: 12
[2025-06-02 10:28:10] 2025-06-02 17:27:57,650 | INFO     | event service: False
[2025-06-02 10:28:10] 2025-06-02 17:27:57,650 | INFO     | sizes: {0: 2405123, 1: 2405123, 4: 2405357, 11: 2405385, 25: 2428558, 26: 2432793, 28: 2432949, 156: 2433091}
[2025-06-02 10:28:10] 2025-06-02 17:27:57,650 | INFO     | --------------------------------------------------
[2025-06-02 10:28:10] 2025-06-02 17:27:57,650 | INFO     | 
[2025-06-02 10:28:10] 2025-06-02 17:27:57,650 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-02 10:28:10] 2025-06-02 17:27:57,710 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 10:28:10] 2025-06-02 17:27:57,712 | INFO     | job 6677383075 has completed (purged errors)
[2025-06-02 10:28:10] 2025-06-02 17:27:57,723 | INFO     | overall cleanup function is called
[2025-06-02 10:28:10] 2025-06-02 17:27:58,730 | INFO     | --- collectZombieJob: --- 10, [598925]
[2025-06-02 10:28:10] 2025-06-02 17:27:58,730 | INFO     | zombie collector waiting for pid 598925
[2025-06-02 10:28:10] 2025-06-02 17:27:58,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 10:28:10] 2025-06-02 17:27:58,731 | INFO     | collected zombie processes
[2025-06-02 10:28:10] 2025-06-02 17:27:58,731 | INFO     | will attempt to kill all subprocesses of pid=598925
[2025-06-02 10:28:10] 2025-06-02 17:27:59,326 | INFO     | process IDs to be killed: [598925] (in reverse order)
[2025-06-02 10:28:10] 2025-06-02 17:27:59,410 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 10:28:10] 2025-06-02 17:27:59,410 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 10:28:10] 2025-06-02 17:27:59,419 | INFO     | did not find any defunct processes belonging to 598925
[2025-06-02 10:28:10] 2025-06-02 17:27:59,428 | INFO     | did not find any defunct processes belonging to 598925
[2025-06-02 10:28:10] 2025-06-02 17:27:59,428 | INFO     | ready for new job
[2025-06-02 10:28:10] 2025-06-02 17:27:59,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 10:28:10] 2025-06-02 17:27:59,429 | INFO     | **************************************
[2025-06-02 10:28:10] 2025-06-02 17:27:59,430 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 10:28:10] 2025-06-02 17:27:59,430 | INFO     | **************************************
[2025-06-02 10:28:10] 2025-06-02 17:27:59,430 | INFO     | 
[2025-06-02 10:28:10] 2025-06-02 17:27:59,434 | INFO     | architecture information:
[2025-06-02 10:28:10] 2025-06-02 17:27:59,452 | INFO     | executing command: cat /etc/os-release
[2025-06-02 10:28:10] 2025-06-02 17:27:59,473 | INFO     | cat /etc/os-release:
[2025-06-02 10:28:10] NAME="CentOS Linux"
[2025-06-02 10:28:10] VERSION="7 (Core)"
[2025-06-02 10:28:10] ID="centos"
[2025-06-02 10:28:10] ID_LIKE="rhel fedora"
[2025-06-02 10:28:10] VERSION_ID="7"
[2025-06-02 10:28:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 10:28:10] ANSI_COLOR="0;31"
[2025-06-02 10:28:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 10:28:10] HOME_URL="https://www.centos.org/"
[2025-06-02 10:28:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 10:28:10] 
[2025-06-02 10:28:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 10:28:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 10:28:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 10:28:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 10:28:10] 
[2025-06-02 10:28:10] 2025-06-02 17:27:59,474 | INFO     | **************************************
[2025-06-02 10:28:10] 2025-06-02 17:27:59,977 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-02 10:28:10] 2025-06-02 17:28:00,023 | INFO     | sufficient remaining disk space (1839178186752 B)
[2025-06-02 10:28:10] 2025-06-02 17:28:00,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 10:28:10] 2025-06-02 17:28:00,024 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 10:28:10] 2025-06-02 17:28:00,024 | INFO     | update_server=False
[2025-06-02 10:28:10] 2025-06-02 17:28:00,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 10:28:10] 2025-06-02 17:28:00,024 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 10:28:10] 2025-06-02 17:28:00,025 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 10:28:10] 2025-06-02 17:28:00,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 10:28:10] 2025-06-02 17:28:00,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 10:28:10] 2025-06-02 17:28:00,052 | INFO     | all payload control threads have been joined
[2025-06-02 10:28:10] 2025-06-02 17:28:00,188 | INFO     | all data control threads have been joined
[2025-06-02 10:28:10] 2025-06-02 17:28:00,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 10:28:10] 2025-06-02 17:28:00,204 | INFO     | aborting loop
[2025-06-02 10:28:10] 2025-06-02 17:28:00,879 | INFO     | all job control threads have been joined
[2025-06-02 10:28:10] 2025-06-02 17:28:01,030 | INFO     | [job] retrieve thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,058 | INFO     | [payload] control thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,153 | INFO     | [payload] failed_post thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,158 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,194 | INFO     | [data] control thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,210 | INFO     | [job] job monitor thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,299 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,347 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 10:28:10] 2025-06-02 17:28:01,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 10:28:10] 2025-06-02 17:28:01,852 | INFO     | [data] copytool_in thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:01,885 | INFO     | [job] control thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:02,180 | INFO     | [payload] validate_post thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:02,411 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:02,462 | INFO     | [job] validate thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:02,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 10:28:10] 2025-06-02 17:28:03,430 | INFO     | [data] copytool_out thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:03,670 | INFO     | [job] queue monitor thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:05,591 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 10:28:10] 2025-06-02 17:28:05,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751017232192)>', '<ExcThread(monitor, started 139750107244288)>']
[2025-06-02 10:28:10] 2025-06-02 17:28:06,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 10:28:10] 2025-06-02 17:28:06,057 | INFO     | [monitor] control thread has ended
[2025-06-02 10:28:10] 2025-06-02 17:28:10,717 | INFO     | all workflow threads have been joined
[2025-06-02 10:28:10] 2025-06-02 17:28:10,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 10:28:10] 2025-06-02 17:28:10,718 | INFO     | traces error code: 0
[2025-06-02 10:28:10] 2025-06-02 17:28:10,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 10:28:10] 2025-06-02 17:28:10,835 [wrapper] ==== pilot stdout END ====
[2025-06-02 10:28:10] 2025-06-02 17:28:10,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 10:28:10] 2025-06-02 17:28:10,840 [wrapper] pilotpid: 588047
[2025-06-02 10:28:10] 2025-06-02 17:28:10,842 [wrapper] Pilot exit status: 0
[2025-06-02 10:28:10] 2025-06-02 17:28:10,849 [wrapper] pandaids: 6677383075
[2025-06-02 10:28:10] 2025-06-02 17:28:10,900 [wrapper] cleanup supervisor_pilot  588059 588048
[2025-06-02 10:28:10] 2025-06-02 17:28:10,902 [wrapper] Test setup, not cleaning
[2025-06-02 10:28:10] 2025-06-02 17:28:10,904 [wrapper] apfmon messages muted
[2025-06-02 10:28:10] 2025-06-02 17:28:10,907 [wrapper] ==== wrapper stdout END ====
[2025-06-02 10:28:10] 2025-06-02 17:28:10,909 [wrapper] ==== wrapper stderr END ====
[2025-06-02 10:28:10]  *** Error codes and diagnostics ***
[2025-06-02 10:28:10]     "exeErrorCode": 65,
[2025-06-02 10:28:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-02 10:28:10]     "pilotErrorCode": 1305,
[2025-06-02 10:28:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-02 10:28:10]  *** Listing of results directory ***
[2025-06-02 10:28:10] total 214948
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc    495897 Jun  2 09:11 pilot3.tar.gz
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc      5111 Jun  2 09:14 queuedata.json
[2025-06-02 10:28:10] -rwx------. 1 boinc boinc     37140 Jun  2 09:15 runpilot2-wrapper.sh
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc       100 Jun  2 10:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 10:28:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 10:24 run_atlas
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc       105 Jun  2 10:24 job.xml
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc      6597 Jun  2 10:24 init_data.xml
[2025-06-02 10:28:10] -rw-r--r--. 2 boinc boinc 216079571 Jun  2 10:24 EVNT.45006593._000134.pool.root.1
[2025-06-02 10:28:10] -rw-r--r--. 2 boinc boinc     15093 Jun  2 10:24 start_atlas.sh
[2025-06-02 10:28:10] drwxrwx--x. 2 boinc boinc      4096 Jun  2 10:24 shared
[2025-06-02 10:28:10] -rw-r--r--. 2 boinc boinc    508878 Jun  2 10:24 input.tar.gz
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc         0 Jun  2 10:24 boinc_lockfile
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc      2520 Jun  2 10:24 pandaJob.out
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc    988298 Jun  2 10:25 agis_schedconf.cvmfs.json
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc   1603667 Jun  2 10:25 agis_ddmendpoints.agis.ALL.json
[2025-06-02 10:28:10] drwx------. 4 boinc boinc      4096 Jun  2 10:25 pilot3
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc       522 Jun  2 10:25 boinc_task_state.xml
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc       973 Jun  2 10:25 memory_monitor_summary.json
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc     20291 Jun  2 10:25 log.45006595._003339.job.log.tgz.1
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc        95 Jun  2 10:27 pilot_heartbeat.json
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc      8341 Jun  2 10:27 heartbeat.json
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc      8192 Jun  2 10:28 boinc_mmap_file
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc        22 Jun  2 10:28 wrapper_checkpoint.txt
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc      4475 Jun  2 10:28 pilotlog.txt
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc     73742 Jun  2 10:28 log.45006595._003339.job.log.1
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc       188 Jun  2 10:28 output.list
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc       620 Jun  2 10:28 runtime_log
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc    112640 Jun  2 10:28 result.tar.gz
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc       644 Jun  2 10:28 VRQMDmjzMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmooVKDmrRRLWm.diag
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc      8484 Jun  2 10:28 runtime_log.err
[2025-06-02 10:28:10] -rw-r--r--. 1 boinc boinc     21482 Jun  2 10:28 stderr.txt
[2025-06-02 10:28:10] No HITS result produced
[2025-06-02 10:28:10]  *** Contents of shared directory: ***
[2025-06-02 10:28:10] total 211648
[2025-06-02 10:28:10] -rw-r--r--. 2 boinc boinc 216079571 Jun  2 10:24 ATLAS.root_0
[2025-06-02 10:28:10] -rw-r--r--. 2 boinc boinc     15093 Jun  2 10:24 start_atlas.sh
[2025-06-02 10:28:10] -rw-r--r--. 2 boinc boinc    508878 Jun  2 10:24 input.tar.gz
[2025-06-02 10:28:10] -rw-------. 1 boinc boinc    112640 Jun  2 10:28 result.tar.gz
10:28:12 (583134): run_atlas exited; CPU time 23.426147
10:28:12 (583134): called boinc_finish(0)

</stderr_txt>
]]>

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