Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
03:32:17 (1145988): wrapper (7.7.26015): starting
03:32:17 (1145988): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 03:32:17] Arguments: --nthreads 12
[2025-06-04 03:32:17] Threads: 12
[2025-06-04 03:32:17] Checking for CVMFS
[2025-06-04 03:32:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:32:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:32:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:32:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:32:17] 2.12.7.0 600724 1946 56768 146762 1 56 2670559 4096000 0 130560 0 1516319 99.991 447667 230 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-04 03:32:17] CVMFS is ok
[2025-06-04 03:32:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:32:17] Checking for apptainer binary...
[2025-06-04 03:32:17] apptainer is not installed, using version from CVMFS
[2025-06-04 03:32:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:32:17] lithium
[2025-06-04 03:32:17] apptainer works
[2025-06-04 03:32:17] Set ATHENA_PROC_NUMBER=12
[2025-06-04 03:32:17] Set ATHENA_CORE_NUMBER=12
[2025-06-04 03:32:17] Starting ATLAS job with PandaID=6677378242
[2025-06-04 03:32:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 04:59:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 04:59:49]  workdir=None
[2025-06-04 04:59:49] ]
[2025-06-04 04:59:49] 2025-06-04 02:58:10,413 | INFO     | transferring file log.45006595._000963.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242/log.45006595._000963.job.log.tgz.1 to /var/lib/boinc
[2025-06-04 04:59:49] 2025-06-04 02:58:10,413 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242/log.45006595._000963.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.450065
[2025-06-04 04:59:49] 2025-06-04 02:58:10,425 | INFO     | adding to output.list: log.45006595._000963.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/26/log.45006595._000963.job.log.tg
[2025-06-04 04:59:49] 2025-06-04 02:58:10,426 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 04:59:49] 2025-06-04 02:58:10,426 | INFO     | summary of transferred files:
[2025-06-04 04:59:49] 2025-06-04 02:58:10,426 | INFO     |  -- lfn=log.45006595._000963.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 04:59:49] 2025-06-04 02:58:10,426 | INFO     | stage-out finished correctly
[2025-06-04 04:59:49] 2025-06-04 02:58:12,161 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 04:59:49] 2025-06-04 02:58:12,590 | INFO     | job 6677378242 has state=finished
[2025-06-04 04:59:49] 2025-06-04 02:58:12,590 | INFO     | preparing for final server update for job 6677378242 in state='finished'
[2025-06-04 04:59:49] 2025-06-04 02:58:12,590 | INFO     | this job has now completed (state=finished)
[2025-06-04 04:59:49] 2025-06-04 02:58:12,590 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 04:59:49] 2025-06-04 02:58:12,591 | INFO     | log transfer has been attempted: DONE
[2025-06-04 04:59:49] 2025-06-04 02:58:12,591 | INFO     | job 6677378242 has finished - writing final server update
[2025-06-04 04:59:49] 2025-06-04 02:58:12,591 | INFO     | total number of processed events: 400 (read)
[2025-06-04 04:59:49] 2025-06-04 02:58:12,614 | INFO     | executing command: lscpu
[2025-06-04 04:59:49] 2025-06-04 02:58:12,635 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 04:59:49] 2025-06-04 02:58:15,197 | WARNING  | process 1156371 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 04:59:49] 2025-06-04 02:58:15,197 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 04:59:49] 2025-06-04 02:58:15,198 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 04:59:49] 2025-06-04 02:58:15,199 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4120702 B
[2025-06-04 04:59:49] 2025-06-04 02:58:15,199 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16508 B
[2025-06-04 04:59:49] 2025-06-04 02:58:15,199 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-04 04:59:49] 2025-06-04 02:58:19,057 | INFO     | PID=1149711 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 04:59:49] 2025-06-04 02:58:41,217 | INFO     | PID=1149711 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 04:59:49] 2025-06-04 02:59:03,383 | INFO     | PID=1149711 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 04:59:49] 2025-06-04 02:59:16,408 | INFO     | 5212s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 04:59:49] 2025-06-04 02:59:25,548 | INFO     | PID=1149711 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 04:59:49] 2025-06-04 02:59:28,551 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 04:59:49] 2025-06-04 02:59:28,552 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,557 | INFO     | extracted standard info from prmon json
[2025-06-04 04:59:49] 2025-06-04 02:59:28,557 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 04:59:49] 2025-06-04 02:59:28,557 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 04:59:49] 2025-06-04 02:59:28,558 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 04:59:49] 2025-06-04 02:59:28,558 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 04:59:49] 2025-06-04 02:59:28,560 | INFO     | fitting pss+swap vs Time
[2025-06-04 04:59:49] 2025-06-04 02:59:28,561 | INFO     | sum of square deviations: 141539398.0
[2025-06-04 04:59:49] 2025-06-04 02:59:28,561 | INFO     | sum of deviations: -7990278736.000002
[2025-06-04 04:59:49] 2025-06-04 02:59:28,561 | INFO     | mean x: 1749003395.0
[2025-06-04 04:59:49] 2025-06-04 02:59:28,561 | INFO     | mean y: 2766660.298701299
[2025-06-04 04:59:49] 2025-06-04 02:59:28,562 | INFO     | -- intersect: 98738700497.32344
[2025-06-04 04:59:49] 2025-06-04 02:59:28,562 | INFO     | intersect: 98738700497.32344
[2025-06-04 04:59:49] 2025-06-04 02:59:28,562 | INFO     | chi2: 0.12624297539574186
[2025-06-04 04:59:49] 2025-06-04 02:59:28,562 | INFO     | -- intersect: 98738700497.32344
[2025-06-04 04:59:49] 2025-06-04 02:59:28,562 | INFO     | current memory leak: -56.45 B/s (using 77 data points, chi2=0.13)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | ..............................
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . Timing measurements:
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . get job = 0 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . initial setup = 4 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . payload setup = 6 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . stage-in = 0 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . payload execution = 5117 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . stage-out = 0 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,563 | INFO     | . log creation = 0 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,564 | INFO     | ..............................
[2025-06-04 04:59:49] 2025-06-04 02:59:28,591 | INFO     | sufficient remaining disk space (31935430656 B)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,596 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,649 | INFO     | 
[2025-06-04 04:59:49] 2025-06-04 02:59:28,649 | INFO     | job summary report
[2025-06-04 04:59:49] 2025-06-04 02:59:28,649 | INFO     | --------------------------------------------------
[2025-06-04 04:59:49] 2025-06-04 02:59:28,649 | INFO     | PanDA job id: 6677378242
[2025-06-04 04:59:49] 2025-06-04 02:59:28,650 | INFO     | task id: 45006595
[2025-06-04 04:59:49] 2025-06-04 02:59:28,650 | INFO     | errors: (none)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 04:59:49] 2025-06-04 02:59:28,650 | INFO     | pilot state: finished 
[2025-06-04 04:59:49] 2025-06-04 02:59:28,650 | INFO     | transexitcode: 0
[2025-06-04 04:59:49] 2025-06-04 02:59:28,651 | INFO     | exeerrorcode: 0
[2025-06-04 04:59:49] 2025-06-04 02:59:28,651 | INFO     | exeerrordiag: 
[2025-06-04 04:59:49] 2025-06-04 02:59:28,651 | INFO     | exitcode: 0
[2025-06-04 04:59:49] 2025-06-04 02:59:28,651 | INFO     | exitmsg: OK
[2025-06-04 04:59:49] 2025-06-04 02:59:28,651 | INFO     | cpuconsumptiontime: 56838 s
[2025-06-04 04:59:49] 2025-06-04 02:59:28,651 | INFO     | nevents: 400
[2025-06-04 04:59:49] 2025-06-04 02:59:28,652 | INFO     | neventsw: 0
[2025-06-04 04:59:49] 2025-06-04 02:59:28,652 | INFO     | pid: 1156371
[2025-06-04 04:59:49] 2025-06-04 02:59:28,652 | INFO     | pgrp: 1156371
[2025-06-04 04:59:49] 2025-06-04 02:59:28,652 | INFO     | corecount: 12
[2025-06-04 04:59:49] 2025-06-04 02:59:28,652 | INFO     | event service: False
[2025-06-04 04:59:49] 2025-06-04 02:59:28,652 | INFO     | sizes: {0: 2405179, 1: 2405179, 3: 2405413, 11: 2405441, 5127: 2431746, 5128: 2440701, 5129: 2440885, 5206: 2441055}
[2025-06-04 04:59:49] 2025-06-04 02:59:28,652 | INFO     | --------------------------------------------------
[2025-06-04 04:59:49] 2025-06-04 02:59:28,653 | INFO     | size of work directory /var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242: 4426120 B (within 2537553920 B limit)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,653 | INFO     | 
[2025-06-04 04:59:49] 2025-06-04 02:59:28,653 | INFO     | pfn file=/var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242/HITS.45006595._000963.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,653 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-06-04 04:59:49] 2025-06-04 02:59:28,654 | INFO     | total size of present files: 0 B (workdir size: 4426120 B)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,654 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/0/PanDA_Pilot-6677378242/HITS.45006595._000963.pool.root.1 since it does not exist
[2025-06-04 04:59:49] 2025-06-04 02:59:28,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,672 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,673 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,673 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,674 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,674 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,674 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 04:59:49] 2025-06-04 02:59:28,674 | INFO     | job 6677378242 has completed (purged errors)
[2025-06-04 04:59:49] 2025-06-04 02:59:28,674 | INFO     | overall cleanup function is called
[2025-06-04 04:59:49] 2025-06-04 02:59:28,744 | INFO     | number of running child processes to parent process 1156371: 1
[2025-06-04 04:59:49] 2025-06-04 02:59:28,744 | INFO     | maximum number of monitored processes: 6
[2025-06-04 04:59:49] 2025-06-04 02:59:28,744 | INFO     | aborting job monitoring since job object (job id=6677378242) has expired
[2025-06-04 04:59:49] 2025-06-04 02:59:29,681 | INFO     | --- collectZombieJob: --- 10, [1156371]
[2025-06-04 04:59:49] 2025-06-04 02:59:29,682 | INFO     | zombie collector waiting for pid 1156371
[2025-06-04 04:59:49] 2025-06-04 02:59:29,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 04:59:49] 2025-06-04 02:59:29,683 | INFO     | collected zombie processes
[2025-06-04 04:59:49] 2025-06-04 02:59:29,683 | INFO     | will attempt to kill all subprocesses of pid=1156371
[2025-06-04 04:59:49] 2025-06-04 02:59:29,777 | INFO     | process IDs to be killed: [1156371] (in reverse order)
[2025-06-04 04:59:49] 2025-06-04 02:59:29,817 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 04:59:49] 2025-06-04 02:59:29,818 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 04:59:49] 2025-06-04 02:59:29,820 | INFO     | did not find any defunct processes belonging to 1156371
[2025-06-04 04:59:49] 2025-06-04 02:59:29,823 | INFO     | did not find any defunct processes belonging to 1156371
[2025-06-04 04:59:49] 2025-06-04 02:59:29,823 | INFO     | ready for new job
[2025-06-04 04:59:49] 2025-06-04 02:59:29,823 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 04:59:49] 2025-06-04 02:59:29,825 | INFO     | **************************************
[2025-06-04 04:59:49] 2025-06-04 02:59:29,825 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 04:59:49] 2025-06-04 02:59:29,825 | INFO     | **************************************
[2025-06-04 04:59:49] 2025-06-04 02:59:29,825 | INFO     | 
[2025-06-04 04:59:49] 2025-06-04 02:59:29,846 | INFO     | architecture information:
[2025-06-04 04:59:49] 2025-06-04 02:59:29,847 | INFO     | executing command: cat /etc/os-release
[2025-06-04 04:59:49] 2025-06-04 02:59:29,857 | INFO     | cat /etc/os-release:
[2025-06-04 04:59:49] NAME="CentOS Linux"
[2025-06-04 04:59:49] VERSION="7 (Core)"
[2025-06-04 04:59:49] ID="centos"
[2025-06-04 04:59:49] ID_LIKE="rhel fedora"
[2025-06-04 04:59:49] VERSION_ID="7"
[2025-06-04 04:59:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 04:59:49] ANSI_COLOR="0;31"
[2025-06-04 04:59:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 04:59:49] HOME_URL="https://www.centos.org/"
[2025-06-04 04:59:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 04:59:49] 
[2025-06-04 04:59:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 04:59:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 04:59:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 04:59:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 04:59:49] 
[2025-06-04 04:59:49] 2025-06-04 02:59:29,857 | INFO     | **************************************
[2025-06-04 04:59:49] 2025-06-04 02:59:30,360 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-04 04:59:49] 2025-06-04 02:59:30,372 | INFO     | sufficient remaining disk space (31940673536 B)
[2025-06-04 04:59:49] 2025-06-04 02:59:30,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 04:59:49] 2025-06-04 02:59:30,373 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 04:59:49] 2025-06-04 02:59:30,373 | INFO     | update_server=False
[2025-06-04 04:59:49] 2025-06-04 02:59:30,373 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 04:59:49] 2025-06-04 02:59:30,373 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 04:59:49] 2025-06-04 02:59:30,374 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 04:59:49] 2025-06-04 02:59:30,374 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 04:59:49] 2025-06-04 02:59:30,374 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 04:59:49] 2025-06-04 02:59:30,374 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:59:49] 2025-06-04 02:59:30,374 | INFO     | aborting loop
[2025-06-04 04:59:49] 2025-06-04 02:59:30,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 04:59:49] 2025-06-04 02:59:30,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:59:49] 2025-06-04 02:59:30,663 | INFO     | all payload control threads have been joined
[2025-06-04 04:59:49] 2025-06-04 02:59:31,109 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 04:59:49] 2025-06-04 02:59:31,249 | INFO     | all data control threads have been joined
[2025-06-04 04:59:49] 2025-06-04 02:59:31,294 | INFO     | all job control threads have been joined
[2025-06-04 04:59:49] 2025-06-04 02:59:31,377 | INFO     | [job] retrieve thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:31,380 | INFO     | [job] job monitor thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:31,380 | INFO     | [job] queue monitor thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:31,406 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:31,668 | INFO     | [payload] control thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:31,765 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:32,213 | INFO     | [payload] failed_post thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:32,255 | INFO     | [data] control thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:32,300 | INFO     | [job] control thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:32,457 | INFO     | [payload] validate_post thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:32,488 | INFO     | [job] validate thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:32,757 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:32,838 | INFO     | [data] copytool_in thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:33,113 | INFO     | [data] copytool_out thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:34,380 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:41,357 | INFO     | job.realtimelogging is not enabled
[2025-06-04 04:59:49] 2025-06-04 02:59:42,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 04:59:49] 2025-06-04 02:59:43,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140549479262016)>', '<ExcThread(monitor, started 140548878874368)>']
[2025-06-04 04:59:49] 2025-06-04 02:59:44,429 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 04:59:49] 2025-06-04 02:59:44,429 | INFO     | [monitor] control thread has ended
[2025-06-04 04:59:49] 2025-06-04 02:59:48,938 | INFO     | all workflow threads have been joined
[2025-06-04 04:59:49] 2025-06-04 02:59:48,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 04:59:49] 2025-06-04 02:59:48,938 | INFO     | traces error code: 0
[2025-06-04 04:59:49] 2025-06-04 02:59:48,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 04:59:49] 2025-06-04 02:59:49,034 [wrapper] ==== pilot stdout END ====
[2025-06-04 04:59:49] 2025-06-04 02:59:49,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 04:59:49] 2025-06-04 02:59:49,039 [wrapper] pilotpid: 1149711
[2025-06-04 04:59:49] 2025-06-04 02:59:49,041 [wrapper] Pilot exit status: 0
[2025-06-04 04:59:49] 2025-06-04 02:59:49,049 [wrapper] pandaids: 6677378242
[2025-06-04 04:59:49] 2025-06-04 02:59:49,076 [wrapper] cleanup supervisor_pilot 1168196 1149712
[2025-06-04 04:59:49] 2025-06-04 02:59:49,078 [wrapper] Test setup, not cleaning
[2025-06-04 04:59:49] 2025-06-04 02:59:49,081 [wrapper] apfmon messages muted
[2025-06-04 04:59:49] 2025-06-04 02:59:49,083 [wrapper] ==== wrapper stdout END ====
[2025-06-04 04:59:49] 2025-06-04 02:59:49,085 [wrapper] ==== wrapper stderr END ====
[2025-06-04 04:59:49]  *** Error codes and diagnostics ***
[2025-06-04 04:59:49]     "exeErrorCode": 0,
[2025-06-04 04:59:49]     "exeErrorDiag": "",
[2025-06-04 04:59:49]     "pilotErrorCode": 0,
[2025-06-04 04:59:49]     "pilotErrorDiag": "",
[2025-06-04 04:59:49]  *** Listing of results directory ***
[2025-06-04 04:59:49] total 393512
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-04 04:59:49] -rwx------ 1 boinc boinc     37140 Jun  2 17:49 runpilot2-wrapper.sh
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc       100 Jun  4 03:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 04:59:49] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 03:32 run_atlas
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc       105 Jun  4 03:32 job.xml
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc      6048 Jun  4 03:32 init_data.xml
[2025-06-04 04:59:49] -rw-r--r-- 2 boinc boinc 214947715 Jun  4 03:32 EVNT.45006593._000039.pool.root.1
[2025-06-04 04:59:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 03:32 start_atlas.sh
[2025-06-04 04:59:49] drwxrwx--x 2 boinc boinc      4096 Jun  4 03:32 shared
[2025-06-04 04:59:49] -rw-r--r-- 2 boinc boinc    508870 Jun  4 03:32 input.tar.gz
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc         0 Jun  4 03:32 boinc_lockfile
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc      2519 Jun  4 03:32 pandaJob.out
[2025-06-04 04:59:49] -rw------- 1 boinc boinc    986069 Jun  4 03:32 agis_schedconf.cvmfs.json
[2025-06-04 04:59:49] -rw------- 1 boinc boinc   1603667 Jun  4 03:32 agis_ddmendpoints.agis.ALL.json
[2025-06-04 04:59:49] drwx------ 4 boinc boinc      4096 Jun  4 03:32 pilot3
[2025-06-04 04:59:49] -rw------- 1 boinc boinc 182467268 Jun  4 04:57 HITS.45006595._000963.pool.root.1
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc       529 Jun  4 04:57 boinc_task_state.xml
[2025-06-04 04:59:49] -rw------- 1 boinc boinc      1065 Jun  4 04:58 memory_monitor_summary.json
[2025-06-04 04:59:49] -rw------- 1 boinc boinc    368209 Jun  4 04:58 log.45006595._000963.job.log.tgz.1
[2025-06-04 04:59:49] -rw------- 1 boinc boinc        95 Jun  4 04:59 pilot_heartbeat.json
[2025-06-04 04:59:49] -rw------- 1 boinc boinc      7728 Jun  4 04:59 heartbeat.json
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc        27 Jun  4 04:59 wrapper_checkpoint.txt
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc      8192 Jun  4 04:59 boinc_mmap_file
[2025-06-04 04:59:49] -rw------- 1 boinc boinc      4555 Jun  4 04:59 pilotlog.txt
[2025-06-04 04:59:49] -rw------- 1 boinc boinc    487265 Jun  4 04:59 log.45006595._000963.job.log.1
[2025-06-04 04:59:49] -rw------- 1 boinc boinc       357 Jun  4 04:59 output.list
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc       620 Jun  4 04:59 runtime_log
[2025-06-04 04:59:49] -rw------- 1 boinc boinc    870400 Jun  4 04:59 result.tar.gz
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc      8716 Jun  4 04:59 runtime_log.err
[2025-06-04 04:59:49] -rw------- 1 boinc boinc       654 Jun  4 04:59 bj2LDmtaMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmrXVKDm76cIwn.diag
[2025-06-04 04:59:49] -rw-r--r-- 1 boinc boinc     22674 Jun  4 04:59 stderr.txt
[2025-06-04 04:59:49] HITS file was successfully produced:
[2025-06-04 04:59:49] -rw------- 1 boinc boinc 182467268 Jun  4 04:57 shared/HITS.pool.root.1
[2025-06-04 04:59:49]  *** Contents of shared directory: ***
[2025-06-04 04:59:49] total 389480
[2025-06-04 04:59:49] -rw-r--r-- 2 boinc boinc 214947715 Jun  4 03:32 ATLAS.root_0
[2025-06-04 04:59:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 03:32 start_atlas.sh
[2025-06-04 04:59:49] -rw-r--r-- 2 boinc boinc    508870 Jun  4 03:32 input.tar.gz
[2025-06-04 04:59:49] -rw------- 1 boinc boinc 182467268 Jun  4 04:57 HITS.pool.root.1
[2025-06-04 04:59:49] -rw------- 1 boinc boinc    870400 Jun  4 04:59 result.tar.gz
04:59:50 (1145988): run_atlas exited; CPU time 56569.675766
04:59:50 (1145988): called boinc_finish(0)

</stderr_txt>
]]>

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