Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:03:40 (28888): wrapper (7.7.26015): starting
19:03:40 (28888): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 19:03:40] Arguments: --nthreads 8
[2025-06-02 19:03:40] Threads: 8
[2025-06-02 19:03:40] Checking for CVMFS
[2025-06-02 19:03:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 19:03:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 19:03:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 19:03:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 19:03:42] 2.11.2.0 26432 30591 94408 146713 1 16 12930123 25165824 4632 130560 0 15670628 99.767 18682140 2056 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 19:03:42] CVMFS is ok
[2025-06-02 19:03:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 19:03:42] Checking for apptainer binary...
[2025-06-02 19:03:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 19:03:43] Running /usr/bin/apptainer --version
[2025-06-02 19:03:43] apptainer version 1.3.2-1.el7
[2025-06-02 19:03:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 19:05:21] cg-vwn331.simple-grid.lan
[2025-06-02 19:05:21] apptainer works
[2025-06-02 19:05:21] Set ATHENA_PROC_NUMBER=8
[2025-06-02 19:05:21] Set ATHENA_CORE_NUMBER=8
[2025-06-02 19:05:21] Starting ATLAS job with PandaID=6677381816
[2025-06-02 19:05:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:49:17]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:49:17] 2025-06-02 20:39:13,510 | INFO     | intersect: -5889664798.763802
[2025-06-02 22:49:17] 2025-06-02 20:39:13,510 | INFO     | chi2: 2.7707008361036216
[2025-06-02 22:49:17] 2025-06-02 20:39:13,511 | INFO     | sum of square deviations: 2632440055.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,512 | INFO     | sum of deviations: 23784936420.500004
[2025-06-02 22:49:17] 2025-06-02 20:39:13,513 | INFO     | mean x: 1748890204.5
[2025-06-02 22:49:17] 2025-06-02 20:39:13,513 | INFO     | mean y: 2479547.161764706
[2025-06-02 22:49:17] 2025-06-02 20:39:13,513 | INFO     | -- intersect: -15799301861.481842
[2025-06-02 22:49:17] 2025-06-02 20:39:13,513 | INFO     | intersect: -15799301861.481842
[2025-06-02 22:49:17] 2025-06-02 20:39:13,513 | INFO     | chi2: 1.9057630434543433
[2025-06-02 22:49:17] 2025-06-02 20:39:13,513 | INFO     | current chi2=1.9057630434543433 (change=31.21729280111028 %)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,514 | INFO     | sum of square deviations: 2443580700.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,515 | INFO     | sum of deviations: 23145174978.000008
[2025-06-02 22:49:17] 2025-06-02 20:39:13,516 | INFO     | mean x: 1748890052.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,516 | INFO     | mean y: 2479030.567839196
[2025-06-02 22:49:17] 2025-06-02 20:39:13,516 | INFO     | -- intersect: -16562705933.785307
[2025-06-02 22:49:17] 2025-06-02 20:39:13,516 | INFO     | intersect: -16562705933.785307
[2025-06-02 22:49:17] 2025-06-02 20:39:13,516 | INFO     | chi2: 1.9073175542240168
[2025-06-02 22:49:17] 2025-06-02 20:39:13,516 | INFO     | current chi2=1.9073175542240168 (change=-0.0815689429497924 %)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,516 | INFO     | right removable region: 198
[2025-06-02 22:49:17] 2025-06-02 20:39:13,517 | INFO     | sum of square deviations: 2632440055.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,518 | INFO     | sum of deviations: -28699872371.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,518 | INFO     | mean x: 1748890509.5
[2025-06-02 22:49:17] 2025-06-02 20:39:13,519 | INFO     | mean y: 2497953.9901960786
[2025-06-02 22:49:17] 2025-06-02 20:39:13,519 | INFO     | -- intersect: 19069573885.374763
[2025-06-02 22:49:17] 2025-06-02 20:39:13,519 | INFO     | intersect: 19069573885.374763
[2025-06-02 22:49:17] 2025-06-02 20:39:13,519 | INFO     | chi2: 1.015733903615598
[2025-06-02 22:49:17] 2025-06-02 20:39:13,519 | INFO     | current chi2=1.015733903615598 (change=63.340181286262464 %)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,520 | INFO     | sum of square deviations: 2443580700.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,521 | INFO     | sum of deviations: -26032418865.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,521 | INFO     | mean x: 1748890662.0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,521 | INFO     | mean y: 2495756.7487437185
[2025-06-02 22:49:17] 2025-06-02 20:39:13,521 | INFO     | -- intersect: 18634110526.938713
[2025-06-02 22:49:17] 2025-06-02 20:39:13,522 | INFO     | intersect: 18634110526.938713
[2025-06-02 22:49:17] 2025-06-02 20:39:13,522 | INFO     | chi2: 1.0000501401878
[2025-06-02 22:49:17] 2025-06-02 20:39:13,522 | INFO     | current chi2=1.0000501401878 (change=1.544081906882323 %)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,522 | INFO     | left removable region: 20
[2025-06-02 22:49:17] 2025-06-02 20:39:13,523 | INFO     | sum of square deviations: 1748737904.5
[2025-06-02 22:49:17] 2025-06-02 20:39:13,524 | INFO     | sum of deviations: 1866961150.4999993
[2025-06-02 22:49:17] 2025-06-02 20:39:13,524 | INFO     | mean x: 1748890631.5
[2025-06-02 22:49:17] 2025-06-02 20:39:13,524 | INFO     | mean y: 2495010.3988764044
[2025-06-02 22:49:17] 2025-06-02 20:39:13,524 | INFO     | -- intersect: -1864629192.1942346
[2025-06-02 22:49:17] 2025-06-02 20:39:13,524 | INFO     | intersect: -1864629192.1942346
[2025-06-02 22:49:17] 2025-06-02 20:39:13,525 | INFO     | chi2: 0.02565849254781471
[2025-06-02 22:49:17] 2025-06-02 20:39:13,525 | INFO     | -- intersect: -1864629192.1942346
[2025-06-02 22:49:17] 2025-06-02 20:39:13,525 | INFO     | current memory leak: 1.07 B/s (using 178 data points, chi2=0.03)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,526 | INFO     | ..............................
[2025-06-02 22:49:17] 2025-06-02 20:39:13,526 | INFO     | . Timing measurements:
[2025-06-02 22:49:17] 2025-06-02 20:39:13,526 | INFO     | . get job = 0 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,526 | INFO     | . initial setup = 2 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,526 | INFO     | . payload setup = 16 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,526 | INFO     | . stage-in = 0 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,526 | INFO     | . payload execution = 12747 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,527 | INFO     | . stage-out = 1 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,527 | INFO     | . log creation = 0 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,527 | INFO     | ..............................
[2025-06-02 22:49:17] 2025-06-02 20:39:13,703 | INFO     | sufficient remaining disk space (497059627008 B)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,704 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,704 | INFO     | size of work directory /var/lib/boinc/slots/8/PanDA_Pilot-6677381816: 3644054 B (within 2537553920 B limit)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,705 | INFO     | pfn file=/var/lib/boinc/slots/8/PanDA_Pilot-6677381816/HITS.45006595._002690.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,705 | INFO     | total size of present files: 0 B (workdir size: 3644054 B)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,705 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/8/PanDA_Pilot-6677381816/HITS.45006595._002690.pool.root.1 since it does not exist
[2025-06-02 22:49:17] 2025-06-02 20:39:13,800 | INFO     | number of running child processes to parent process 8771: 1
[2025-06-02 22:49:17] 2025-06-02 20:39:13,800 | INFO     | maximum number of monitored processes: 6
[2025-06-02 22:49:17] 2025-06-02 20:39:13,800 | INFO     | aborting job monitoring since job object (job id=6677381816) has expired
[2025-06-02 22:49:17] 2025-06-02 20:39:13,839 | INFO     | 
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | job summary report
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | --------------------------------------------------
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | PanDA job id: 6677381816
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | task id: 45006595
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | errors: (none)
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | pilot state: finished 
[2025-06-02 22:49:17] 2025-06-02 20:39:13,840 | INFO     | transexitcode: 0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | exeerrorcode: 0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | exeerrordiag: 
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | exitcode: 0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | exitmsg: OK
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | cpuconsumptiontime: 48523 s
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | nevents: 400
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | neventsw: 0
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | pid: 8771
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | pgrp: 8771
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | corecount: 8
[2025-06-02 22:49:17] 2025-06-02 20:39:13,841 | INFO     | event service: False
[2025-06-02 22:49:17] 2025-06-02 20:39:13,842 | INFO     | sizes: {0: 2404951, 1: 2405206, 2: 2405206, 10: 2405440, 12: 2405468, 12768: 2434739, 12771: 2443680, 12772: 2443736, 12786: 2443906}
[2025-06-02 22:49:17] 2025-06-02 20:39:13,842 | INFO     | --------------------------------------------------
[2025-06-02 22:49:17] 2025-06-02 20:39:13,842 | INFO     | 
[2025-06-02 22:49:17] 2025-06-02 20:39:13,842 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-02 22:49:17] 2025-06-02 20:39:14,004 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,004 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,005 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,006 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:49:17] 2025-06-02 20:39:14,007 | INFO     | job 6677381816 has completed (purged errors)
[2025-06-02 22:49:17] 2025-06-02 20:39:14,007 | INFO     | overall cleanup function is called
[2025-06-02 22:49:17] 2025-06-02 20:39:15,015 | INFO     | --- collectZombieJob: --- 10, [8771]
[2025-06-02 22:49:17] 2025-06-02 20:39:15,016 | INFO     | zombie collector waiting for pid 8771
[2025-06-02 22:49:17] 2025-06-02 20:39:15,016 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:49:17] 2025-06-02 20:39:15,016 | INFO     | collected zombie processes
[2025-06-02 22:49:17] 2025-06-02 20:39:15,016 | INFO     | will attempt to kill all subprocesses of pid=8771
[2025-06-02 22:49:17] 2025-06-02 20:39:15,120 | INFO     | process IDs to be killed: [8771] (in reverse order)
[2025-06-02 22:49:17] 2025-06-02 20:39:15,230 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:49:17] 2025-06-02 20:39:15,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:49:17] 2025-06-02 20:39:15,234 | INFO     | did not find any defunct processes belonging to 8771
[2025-06-02 22:49:17] 2025-06-02 20:39:15,237 | INFO     | did not find any defunct processes belonging to 8771
[2025-06-02 22:49:17] 2025-06-02 20:39:15,238 | INFO     | ready for new job
[2025-06-02 22:49:17] 2025-06-02 20:39:15,238 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:49:17] 2025-06-02 20:39:15,240 | INFO     | **************************************
[2025-06-02 22:49:17] 2025-06-02 20:39:15,240 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:49:17] 2025-06-02 20:39:15,240 | INFO     | **************************************
[2025-06-02 22:49:17] 2025-06-02 20:39:15,240 | INFO     | 
[2025-06-02 22:49:17] 2025-06-02 20:39:15,241 | INFO     | pilot is running in a VM
[2025-06-02 22:49:17] 2025-06-02 20:39:15,241 | INFO     | architecture information:
[2025-06-02 22:49:17] 2025-06-02 20:39:15,242 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:49:17] 2025-06-02 20:39:15,272 | INFO     | cat /etc/os-release:
[2025-06-02 22:49:17] NAME="CentOS Linux"
[2025-06-02 22:49:17] VERSION="7 (Core)"
[2025-06-02 22:49:17] ID="centos"
[2025-06-02 22:49:17] ID_LIKE="rhel fedora"
[2025-06-02 22:49:17] VERSION_ID="7"
[2025-06-02 22:49:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:49:17] ANSI_COLOR="0;31"
[2025-06-02 22:49:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:49:17] HOME_URL="https://www.centos.org/"
[2025-06-02 22:49:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:49:17] 
[2025-06-02 22:49:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:49:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:49:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:49:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:49:17] 
[2025-06-02 22:49:17] 2025-06-02 20:39:15,273 | INFO     | **************************************
[2025-06-02 22:49:17] 2025-06-02 20:39:15,775 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-02 22:49:17] 2025-06-02 20:39:15,831 | INFO     | sufficient remaining disk space (497064869888 B)
[2025-06-02 22:49:17] 2025-06-02 20:39:15,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:49:17] 2025-06-02 20:39:15,832 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:49:17] 2025-06-02 20:39:15,832 | INFO     | update_server=False
[2025-06-02 22:49:17] 2025-06-02 20:39:15,832 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:49:17] 2025-06-02 20:39:15,835 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:49:17] 2025-06-02 20:39:15,836 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:49:17] 2025-06-02 20:39:15,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:49:17] 2025-06-02 20:39:15,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:49:17] 2025-06-02 20:39:15,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:49:17] 2025-06-02 20:39:16,305 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-02 22:49:17] 2025-06-02 20:39:16,306 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-02 22:49:17] 2025-06-02 20:39:16,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:49:17] 2025-06-02 20:39:16,306 | INFO     | will abort loop
[2025-06-02 22:49:17] 2025-06-02 20:39:16,793 | INFO     | all job control threads have been joined
[2025-06-02 22:49:17] 2025-06-02 20:39:16,799 | INFO     | all data control threads have been joined
[2025-06-02 22:49:17] 2025-06-02 20:39:16,835 | INFO     | all payload control threads have been joined
[2025-06-02 22:49:17] 2025-06-02 20:39:16,838 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,160 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,313 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,360 | INFO     | [job] validate thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,557 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,755 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,800 | INFO     | [job] control thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,806 | INFO     | [data] control thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,841 | INFO     | [payload] control thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,843 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,843 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,866 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:17,869 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:18,119 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:18,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:49:17] 2025-06-02 20:39:19,244 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:49:17] 2025-06-02 20:39:19,679 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:23,254 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:49:17] 2025-06-02 20:39:25,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140236144789312)>', '<ExcThread(monitor, started 140234910070528)>']
[2025-06-02 22:49:17] 2025-06-02 20:39:25,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:49:17] 2025-06-02 20:39:25,892 | INFO     | [monitor] control thread has ended
[2025-06-02 22:49:17] 2025-06-02 20:39:30,316 | INFO     | all workflow threads have been joined
[2025-06-02 22:49:17] 2025-06-02 20:39:30,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:49:17] 2025-06-02 20:39:30,316 | INFO     | traces error code: 0
[2025-06-02 22:49:17] 2025-06-02 20:39:30,316 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:49:17] 2025-06-02 20:39:30,556 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:49:17] 2025-06-02 20:39:30,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:49:17] 2025-06-02 20:39:30,659 [wrapper] pilotpid: 32602
[2025-06-02 22:49:17] 2025-06-02 20:39:30,671 [wrapper] Pilot exit status: 0
[2025-06-02 22:49:17] 2025-06-02 20:39:30,862 [wrapper] pandaids: 6677381816
[2025-06-02 22:49:17] 2025-06-02 20:39:30,906 [wrapper] cleanup supervisor_pilot   937 32603
[2025-06-02 22:49:17] 2025-06-02 20:39:30,963 [wrapper] Test setup, not cleaning
[2025-06-02 22:49:17] 2025-06-02 20:39:31,031 [wrapper] apfmon messages muted
[2025-06-02 22:49:17] 2025-06-02 20:39:31,137 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:49:17] 2025-06-02 20:39:31,247 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:49:17]  *** Error codes and diagnostics ***
[2025-06-02 22:49:17]     "exeErrorCode": 0,
[2025-06-02 22:49:17]     "exeErrorDiag": "",
[2025-06-02 22:49:17]     "pilotErrorCode": 0,
[2025-06-02 22:49:17]     "pilotErrorDiag": "",
[2025-06-02 22:49:17]  *** Listing of results directory ***
[2025-06-02 22:49:17] total 389352
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:59 pilot3.tar.gz
[2025-06-02 22:49:17] -rwx------. 1 boinc boinc     37140 Jun  2 18:02 runpilot2-wrapper.sh
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc      5111 Jun  2 18:02 queuedata.json
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc       100 Jun  2 19:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:49:17] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 19:03 run_atlas
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc       105 Jun  2 19:03 job.xml
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc      6390 Jun  2 19:03 init_data.xml
[2025-06-02 22:49:17] -rw-r--r--. 2 boinc boinc 214226311 Jun  2 19:03 EVNT.45006593._000108.pool.root.1
[2025-06-02 22:49:17] -rw-r--r--. 2 boinc boinc     15093 Jun  2 19:03 start_atlas.sh
[2025-06-02 22:49:17] drwxrwx--x. 2 boinc boinc        68 Jun  2 19:03 shared
[2025-06-02 22:49:17] -rw-r--r--. 2 boinc boinc    508876 Jun  2 19:03 input.tar.gz
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc         0 Jun  2 19:03 boinc_lockfile
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc      2522 Jun  2 19:05 pandaJob.out
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc    988298 Jun  2 19:05 agis_schedconf.cvmfs.json
[2025-06-02 22:49:17] drwx------. 4 boinc boinc      4096 Jun  2 19:05 pilot3
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc 177675224 Jun  2 22:38 HITS.45006595._002690.pool.root.1
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc       530 Jun  2 22:38 boinc_task_state.xml
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc        95 Jun  2 22:38 pilot_heartbeat.json
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc      1017 Jun  2 22:38 memory_monitor_summary.json
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc   1603667 Jun  2 22:38 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc    374894 Jun  2 22:38 log.45006595._002690.job.log.tgz.1
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc      7679 Jun  2 22:39 heartbeat.json
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc      4725 Jun  2 22:39 pilotlog.txt
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc   1108944 Jun  2 22:39 log.45006595._002690.job.log.1
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc       357 Jun  2 22:39 output.list
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc       620 Jun  2 22:39 runtime_log
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc   1505280 Jun  2 22:39 result.tar.gz
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc      8659 Jun  2 22:39 runtime_log.err
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc       657 Jun  2 22:39 KgcNDmonMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmVjVKDmVzt6Mn.diag
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:49 boinc_mmap_file
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:49 wrapper_checkpoint.txt
[2025-06-02 22:49:17] -rw-r--r--. 1 boinc boinc     20964 Jun  2 22:49 stderr.txt
[2025-06-02 22:49:17] HITS file was successfully produced:
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc 177675224 Jun  2 22:38 shared/HITS.pool.root.1
[2025-06-02 22:49:17]  *** Contents of shared directory: ***
[2025-06-02 22:49:17] total 384708
[2025-06-02 22:49:17] -rw-r--r--. 2 boinc boinc 214226311 Jun  2 19:03 ATLAS.root_0
[2025-06-02 22:49:17] -rw-r--r--. 2 boinc boinc     15093 Jun  2 19:03 start_atlas.sh
[2025-06-02 22:49:17] -rw-r--r--. 2 boinc boinc    508876 Jun  2 19:03 input.tar.gz
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc 177675224 Jun  2 22:38 HITS.pool.root.1
[2025-06-02 22:49:17] -rw-------. 1 boinc boinc   1505280 Jun  2 22:39 result.tar.gz
22:49:19 (28888): run_atlas exited; CPU time 48672.922754
22:49:19 (28888): called boinc_finish(0)

</stderr_txt>
]]>

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