Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:20:02 (14473): wrapper (7.7.26015): starting
03:20:02 (14473): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 03:20:02] Arguments: --nthreads 8
[2025-06-03 03:20:02] Threads: 8
[2025-06-03 03:20:02] Checking for CVMFS
[2025-06-03 03:20:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 03:20:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 03:20:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 03:20:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 03:20:03] 2.11.2.0 2200 31097 91848 146723 3 155 24032962 25165825 4353 130560 0 16160965 99.754 19470599 2128 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 03:20:03] CVMFS is ok
[2025-06-03 03:20:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 03:20:03] Checking for apptainer binary...
[2025-06-03 03:20:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 03:20:03] Running /usr/bin/apptainer --version
[2025-06-03 03:20:04] apptainer version 1.3.2-1.el7
[2025-06-03 03:20:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 03:20:05] cg-vwn296.simple-grid.lan
[2025-06-03 03:20:05] apptainer works
[2025-06-03 03:20:05] Set ATHENA_PROC_NUMBER=8
[2025-06-03 03:20:05] Set ATHENA_CORE_NUMBER=8
[2025-06-03 03:20:05] Starting ATLAS job with PandaID=6677382006
[2025-06-03 03:20:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 07:27:14]  *** The last 200 lines of the pilot log: ***
[2025-06-03 07:27:14] 2025-06-03 05:07:24,826 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6677382006/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 07:27:14] 2025-06-03 05:07:24,827 | INFO     | extracted standard info from prmon json
[2025-06-03 07:27:14] 2025-06-03 05:07:24,827 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 07:27:14] 2025-06-03 05:07:24,827 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 07:27:14] 2025-06-03 05:07:24,827 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 07:27:14] 2025-06-03 05:07:24,827 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 07:27:14] 2025-06-03 05:07:24,832 | INFO     | fitting pss+swap vs Time
[2025-06-03 07:27:14] 2025-06-03 05:07:24,833 | INFO     | sum of square deviations: 3346927870.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,835 | INFO     | sum of deviations: -27701362700.000004
[2025-06-03 07:27:14] 2025-06-03 05:07:24,835 | INFO     | mean x: 1748920394.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,836 | INFO     | mean y: 2513818.9457013574
[2025-06-03 07:27:14] 2025-06-03 05:07:24,836 | INFO     | -- intersect: 14477722144.13166
[2025-06-03 07:27:14] 2025-06-03 05:07:24,836 | INFO     | intersect: 14477722144.13166
[2025-06-03 07:27:14] 2025-06-03 05:07:24,836 | INFO     | chi2: 2.6325316807380776
[2025-06-03 07:27:14] 2025-06-03 05:07:24,837 | INFO     | sum of square deviations: 3124858590.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,839 | INFO     | sum of deviations: -12244074574.000006
[2025-06-03 07:27:14] 2025-06-03 05:07:24,839 | INFO     | mean x: 1748920241.5
[2025-06-03 07:27:14] 2025-06-03 05:07:24,839 | INFO     | mean y: 2524249.7407407407
[2025-06-03 07:27:14] 2025-06-03 05:07:24,839 | INFO     | -- intersect: 6855285500.8999815
[2025-06-03 07:27:14] 2025-06-03 05:07:24,839 | INFO     | intersect: 6855285500.8999815
[2025-06-03 07:27:14] 2025-06-03 05:07:24,839 | INFO     | chi2: 1.865876955681353
[2025-06-03 07:27:14] 2025-06-03 05:07:24,839 | INFO     | current chi2=1.865876955681353 (change=29.122336140007217 %)
[2025-06-03 07:27:14] 2025-06-03 05:07:24,840 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,841 | INFO     | sum of deviations: -11661133930.000011
[2025-06-03 07:27:14] 2025-06-03 05:07:24,842 | INFO     | mean x: 1748920089.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,842 | INFO     | mean y: 2524669.1279620854
[2025-06-03 07:27:14] 2025-06-03 05:07:24,842 | INFO     | -- intersect: 7004083054.385819
[2025-06-03 07:27:14] 2025-06-03 05:07:24,842 | INFO     | intersect: 7004083054.385819
[2025-06-03 07:27:14] 2025-06-03 05:07:24,842 | INFO     | chi2: 1.8653315192643185
[2025-06-03 07:27:14] 2025-06-03 05:07:24,842 | INFO     | current chi2=1.8653315192643185 (change=0.029232175003488053 %)
[2025-06-03 07:27:14] 2025-06-03 05:07:24,843 | INFO     | right removable region: 210
[2025-06-03 07:27:14] 2025-06-03 05:07:24,843 | INFO     | sum of square deviations: 3124858590.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,845 | INFO     | sum of deviations: -65536519431.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,845 | INFO     | mean x: 1748920546.5
[2025-06-03 07:27:14] 2025-06-03 05:07:24,845 | INFO     | mean y: 2539571.3055555555
[2025-06-03 07:27:14] 2025-06-03 05:07:24,845 | INFO     | -- intersect: 36682012282.732285
[2025-06-03 07:27:14] 2025-06-03 05:07:24,845 | INFO     | intersect: 36682012282.732285
[2025-06-03 07:27:14] 2025-06-03 05:07:24,845 | INFO     | chi2: 1.0023192449783778
[2025-06-03 07:27:14] 2025-06-03 05:07:24,846 | INFO     | current chi2=1.0023192449783778 (change=61.92565307714133 %)
[2025-06-03 07:27:14] 2025-06-03 05:07:24,846 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,847 | INFO     | sum of deviations: -62802871836.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,848 | INFO     | mean x: 1748920699.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,848 | INFO     | mean y: 2537574.0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,848 | INFO     | -- intersect: 37710545211.07413
[2025-06-03 07:27:14] 2025-06-03 05:07:24,848 | INFO     | intersect: 37710545211.07413
[2025-06-03 07:27:14] 2025-06-03 05:07:24,848 | INFO     | chi2: 0.9928734612504972
[2025-06-03 07:27:14] 2025-06-03 05:07:24,848 | INFO     | current chi2=0.9928734612504972 (change=0.9423927331739785 %)
[2025-06-03 07:27:14] 2025-06-03 05:07:24,848 | INFO     | left removable region: 20
[2025-06-03 07:27:14] 2025-06-03 05:07:24,849 | INFO     | sum of square deviations: 2126802667.5
[2025-06-03 07:27:14] 2025-06-03 05:07:24,850 | INFO     | sum of deviations: -34127408340.500004
[2025-06-03 07:27:14] 2025-06-03 05:07:24,850 | INFO     | mean x: 1748920668.5
[2025-06-03 07:27:14] 2025-06-03 05:07:24,851 | INFO     | mean y: 2540391.552631579
[2025-06-03 07:27:14] 2025-06-03 05:07:24,851 | INFO     | -- intersect: 28066323986.10642
[2025-06-03 07:27:14] 2025-06-03 05:07:24,851 | INFO     | intersect: 28066323986.10642
[2025-06-03 07:27:14] 2025-06-03 05:07:24,851 | INFO     | chi2: 0.18343418349521015
[2025-06-03 07:27:14] 2025-06-03 05:07:24,851 | INFO     | -- intersect: 28066323986.10642
[2025-06-03 07:27:14] 2025-06-03 05:07:24,852 | INFO     | current memory leak: -16.05 B/s (using 190 data points, chi2=0.18)
[2025-06-03 07:27:14] 2025-06-03 05:07:24,852 | INFO     | ..............................
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . Timing measurements:
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . get job = 0 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . initial setup = 2 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . payload setup = 14 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . stage-in = 0 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . payload execution = 13483 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . stage-out = 3 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | . log creation = 1 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,853 | INFO     | ..............................
[2025-06-03 07:27:14] 2025-06-03 05:07:24,992 | INFO     | 
[2025-06-03 07:27:14] 2025-06-03 05:07:24,992 | INFO     | job summary report
[2025-06-03 07:27:14] 2025-06-03 05:07:24,992 | INFO     | --------------------------------------------------
[2025-06-03 07:27:14] 2025-06-03 05:07:24,992 | INFO     | PanDA job id: 6677382006
[2025-06-03 07:27:14] 2025-06-03 05:07:24,992 | INFO     | task id: 45006595
[2025-06-03 07:27:14] 2025-06-03 05:07:24,992 | INFO     | errors: (none)
[2025-06-03 07:27:14] 2025-06-03 05:07:24,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | pilot state: finished 
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | transexitcode: 0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | exeerrorcode: 0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | exeerrordiag: 
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | exitcode: 0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | exitmsg: OK
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | cpuconsumptiontime: 50540 s
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | nevents: 400
[2025-06-03 07:27:14] 2025-06-03 05:07:24,993 | INFO     | neventsw: 0
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | pid: 26747
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | pgrp: 26747
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | corecount: 8
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | event service: False
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | sizes: {0: 2405008, 1: 2405207, 11: 2405413, 12: 2405441, 13501: 2435308, 13505: 2444251, 13507: 2444435, 13596: 2444435}
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | --------------------------------------------------
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | 
[2025-06-03 07:27:14] 2025-06-03 05:07:24,994 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-06-03 07:27:14] 2025-06-03 05:07:25,043 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,043 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,044 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,045 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 07:27:14] 2025-06-03 05:07:25,046 | INFO     | job 6677382006 has completed (purged errors)
[2025-06-03 07:27:14] 2025-06-03 05:07:25,046 | INFO     | overall cleanup function is called
[2025-06-03 07:27:14] 2025-06-03 05:07:26,055 | INFO     | --- collectZombieJob: --- 10, [26747]
[2025-06-03 07:27:14] 2025-06-03 05:07:26,056 | INFO     | zombie collector waiting for pid 26747
[2025-06-03 07:27:14] 2025-06-03 05:07:26,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 07:27:14] 2025-06-03 05:07:26,056 | INFO     | collected zombie processes
[2025-06-03 07:27:14] 2025-06-03 05:07:26,056 | INFO     | will attempt to kill all subprocesses of pid=26747
[2025-06-03 07:27:14] 2025-06-03 05:07:26,170 | INFO     | process IDs to be killed: [26747] (in reverse order)
[2025-06-03 07:27:14] 2025-06-03 05:07:26,811 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 07:27:14] 2025-06-03 05:07:26,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 07:27:14] 2025-06-03 05:07:26,816 | INFO     | did not find any defunct processes belonging to 26747
[2025-06-03 07:27:14] 2025-06-03 05:07:26,819 | INFO     | did not find any defunct processes belonging to 26747
[2025-06-03 07:27:14] 2025-06-03 05:07:26,820 | INFO     | ready for new job
[2025-06-03 07:27:14] 2025-06-03 05:07:26,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 07:27:14] 2025-06-03 05:07:26,822 | INFO     | **************************************
[2025-06-03 07:27:14] 2025-06-03 05:07:26,822 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 07:27:14] 2025-06-03 05:07:26,822 | INFO     | **************************************
[2025-06-03 07:27:14] 2025-06-03 05:07:26,822 | INFO     | 
[2025-06-03 07:27:14] 2025-06-03 05:07:26,823 | INFO     | pilot is running in a VM
[2025-06-03 07:27:14] 2025-06-03 05:07:26,823 | INFO     | architecture information:
[2025-06-03 07:27:14] 2025-06-03 05:07:26,840 | INFO     | executing command: cat /etc/os-release
[2025-06-03 07:27:14] 2025-06-03 05:07:27,094 | INFO     | cat /etc/os-release:
[2025-06-03 07:27:14] NAME="CentOS Linux"
[2025-06-03 07:27:14] VERSION="7 (Core)"
[2025-06-03 07:27:14] ID="centos"
[2025-06-03 07:27:14] ID_LIKE="rhel fedora"
[2025-06-03 07:27:14] VERSION_ID="7"
[2025-06-03 07:27:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 07:27:14] ANSI_COLOR="0;31"
[2025-06-03 07:27:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 07:27:14] HOME_URL="https://www.centos.org/"
[2025-06-03 07:27:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 07:27:14] 
[2025-06-03 07:27:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 07:27:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 07:27:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 07:27:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 07:27:14] 
[2025-06-03 07:27:14] 2025-06-03 05:07:27,095 | INFO     | **************************************
[2025-06-03 07:27:14] 2025-06-03 05:07:27,599 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-06-03 07:27:14] 2025-06-03 05:07:27,714 | INFO     | sufficient remaining disk space (496794337280 B)
[2025-06-03 07:27:14] 2025-06-03 05:07:27,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 07:27:14] 2025-06-03 05:07:27,715 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 07:27:14] 2025-06-03 05:07:27,715 | INFO     | update_server=False
[2025-06-03 07:27:14] 2025-06-03 05:07:27,715 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 07:27:14] 2025-06-03 05:07:27,715 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 07:27:14] 2025-06-03 05:07:27,780 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 07:27:14] 2025-06-03 05:07:27,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 07:27:14] 2025-06-03 05:07:27,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 07:27:14] 2025-06-03 05:07:27,995 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 07:27:14] 2025-06-03 05:07:28,231 | INFO     | all data control threads have been joined
[2025-06-03 07:27:14] 2025-06-03 05:07:28,384 | INFO     | all job control threads have been joined
[2025-06-03 07:27:14] 2025-06-03 05:07:28,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 07:27:14] 2025-06-03 05:07:28,690 | INFO     | aborting loop
[2025-06-03 07:27:14] 2025-06-03 05:07:28,722 | INFO     | [job] retrieve thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,064 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,130 | INFO     | all payload control threads have been joined
[2025-06-03 07:27:14] 2025-06-03 05:07:29,219 | INFO     | [payload] failed_post thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,238 | INFO     | [data] control thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,342 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,342 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,391 | INFO     | [job] control thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,696 | INFO     | [job] job monitor thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,699 | INFO     | [payload] validate_post thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,723 | INFO     | [data] copytool_out thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,965 | INFO     | [job] validate thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:29,984 | INFO     | [data] copytool_in thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:30,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 07:27:14] 2025-06-03 05:07:30,088 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:30,137 | INFO     | [payload] control thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:31,017 | INFO     | [job] queue monitor thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:32,004 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 07:27:14] 2025-06-03 05:07:33,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139732359395136)>', '<ExcThread(monitor, started 139731786524416)>']
[2025-06-03 07:27:14] 2025-06-03 05:07:33,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 07:27:14] 2025-06-03 05:07:33,816 | INFO     | [monitor] control thread has ended
[2025-06-03 07:27:14] 2025-06-03 05:07:38,676 | INFO     | all workflow threads have been joined
[2025-06-03 07:27:14] 2025-06-03 05:07:38,677 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 07:27:14] 2025-06-03 05:07:38,677 | INFO     | traces error code: 0
[2025-06-03 07:27:14] 2025-06-03 05:07:38,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 07:27:14] 2025-06-03 05:07:39,066 [wrapper] ==== pilot stdout END ====
[2025-06-03 07:27:14] 2025-06-03 05:07:39,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 07:27:14] 2025-06-03 05:07:39,160 [wrapper] pilotpid: 18203
[2025-06-03 07:27:14] 2025-06-03 05:07:39,217 [wrapper] Pilot exit status: 0
[2025-06-03 07:27:14] 2025-06-03 05:07:39,686 [wrapper] pandaids: 6677382006
[2025-06-03 07:27:14] 2025-06-03 05:07:40,564 [wrapper] cleanup supervisor_pilot 30385 18204
[2025-06-03 07:27:14] 2025-06-03 05:07:40,652 [wrapper] Test setup, not cleaning
[2025-06-03 07:27:14] 2025-06-03 05:07:40,771 [wrapper] apfmon messages muted
[2025-06-03 07:27:14] 2025-06-03 05:07:40,877 [wrapper] ==== wrapper stdout END ====
[2025-06-03 07:27:14] 2025-06-03 05:07:40,931 [wrapper] ==== wrapper stderr END ====
[2025-06-03 07:27:14]  *** Error codes and diagnostics ***
[2025-06-03 07:27:14]     "exeErrorCode": 0,
[2025-06-03 07:27:14]     "exeErrorDiag": "",
[2025-06-03 07:27:14]     "pilotErrorCode": 0,
[2025-06-03 07:27:14]     "pilotErrorDiag": "",
[2025-06-03 07:27:14]  *** Listing of results directory ***
[2025-06-03 07:27:14] total 400524
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:59 pilot3.tar.gz
[2025-06-03 07:27:14] -rwx------. 1 boinc boinc     37140 Jun  2 18:02 runpilot2-wrapper.sh
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc      5111 Jun  2 18:02 queuedata.json
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc       100 Jun  3 03:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 07:27:14] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 03:20 run_atlas
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc       105 Jun  3 03:20 job.xml
[2025-06-03 07:27:14] -rw-r--r--. 2 boinc boinc 215725428 Jun  3 03:20 EVNT.45006593._000111.pool.root.1
[2025-06-03 07:27:14] drwxrwx--x. 2 boinc boinc        68 Jun  3 03:20 shared
[2025-06-03 07:27:14] -rw-r--r--. 2 boinc boinc    508872 Jun  3 03:20 input.tar.gz
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc      6392 Jun  3 03:20 init_data.xml
[2025-06-03 07:27:14] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:20 start_atlas.sh
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc         0 Jun  3 03:20 boinc_lockfile
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc      2522 Jun  3 03:20 pandaJob.out
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc    988081 Jun  3 03:20 agis_schedconf.cvmfs.json
[2025-06-03 07:27:14] drwx------. 4 boinc boinc      4096 Jun  3 03:20 pilot3
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc 187473854 Jun  3 07:04 HITS.45006595._002756.pool.root.1
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc       530 Jun  3 07:04 boinc_task_state.xml
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc      1019 Jun  3 07:05 memory_monitor_summary.json
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc   1603667 Jun  3 07:05 agis_ddmendpoints.agis.ALL.json
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc    371377 Jun  3 07:05 log.45006595._002756.job.log.tgz.1
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc        95 Jun  3 07:07 pilot_heartbeat.json
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc      7690 Jun  3 07:07 heartbeat.json
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc      4417 Jun  3 07:07 pilotlog.txt
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc   1185764 Jun  3 07:07 log.45006595._002756.job.log.1
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc       357 Jun  3 07:07 output.list
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc       620 Jun  3 07:07 runtime_log
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc   1576960 Jun  3 07:07 result.tar.gz
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc       656 Jun  3 07:07 XBKLDmpnMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWkVKDmJmcham.diag
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc      8673 Jun  3 07:07 runtime_log.err
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc      8192 Jun  3 07:27 boinc_mmap_file
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc        28 Jun  3 07:27 wrapper_checkpoint.txt
[2025-06-03 07:27:14] -rw-r--r--. 1 boinc boinc     20488 Jun  3 07:27 stderr.txt
[2025-06-03 07:27:14] HITS file was successfully produced:
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc 187473854 Jun  3 07:04 shared/HITS.pool.root.1
[2025-06-03 07:27:14]  *** Contents of shared directory: ***
[2025-06-03 07:27:14] total 395808
[2025-06-03 07:27:14] -rw-r--r--. 2 boinc boinc 215725428 Jun  3 03:20 ATLAS.root_0
[2025-06-03 07:27:14] -rw-r--r--. 2 boinc boinc    508872 Jun  3 03:20 input.tar.gz
[2025-06-03 07:27:14] -rw-r--r--. 2 boinc boinc     15093 Jun  3 03:20 start_atlas.sh
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc 187473854 Jun  3 07:04 HITS.pool.root.1
[2025-06-03 07:27:14] -rw-------. 1 boinc boinc   1576960 Jun  3 07:07 result.tar.gz
07:27:16 (14473): run_atlas exited; CPU time 50713.636624
07:27:16 (14473): called boinc_finish(0)

</stderr_txt>
]]>

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