Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:10:09 (22545): wrapper (7.7.26015): starting
23:10:09 (22545): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 23:10:09] Arguments: --nthreads 8
[2025-06-02 23:10:09] Threads: 8
[2025-06-02 23:10:09] Checking for CVMFS
[2025-06-02 23:10:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 23:10:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 23:10:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 23:10:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 23:10:12] 2.11.2.0 2200 30847 92644 146718 0 114 23808986 25165825 4368 130560 0 16022527 99.752 19372130 2129 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 23:10:12] CVMFS is ok
[2025-06-02 23:10:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 23:10:12] Checking for apptainer binary...
[2025-06-02 23:10:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 23:10:12] Running /usr/bin/apptainer --version
[2025-06-02 23:10:12] apptainer version 1.3.2-1.el7
[2025-06-02 23:10:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 23:10:14] cg-vwn296.simple-grid.lan
[2025-06-02 23:10:14] apptainer works
[2025-06-02 23:10:14] Set ATHENA_PROC_NUMBER=8
[2025-06-02 23:10:14] Set ATHENA_CORE_NUMBER=8
[2025-06-02 23:10:14] Starting ATLAS job with PandaID=6677382286
[2025-06-02 23:10:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 03:19:56]  *** The last 200 lines of the pilot log: ***
[2025-06-03 03:19:56] 2025-06-03 00:47:21,953 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6677382286/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 03:19:56] 2025-06-03 00:47:21,954 | INFO     | extracted standard info from prmon json
[2025-06-03 03:19:56] 2025-06-03 00:47:21,954 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 03:19:56] 2025-06-03 00:47:21,955 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 03:19:56] 2025-06-03 00:47:21,955 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 03:19:56] 2025-06-03 00:47:21,955 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 03:19:56] 2025-06-03 00:47:21,960 | INFO     | fitting pss+swap vs Time
[2025-06-03 03:19:56] 2025-06-03 00:47:21,960 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,962 | INFO     | sum of deviations: -56356170344.99999
[2025-06-03 03:19:56] 2025-06-03 00:47:21,962 | INFO     | mean x: 1748905100.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,962 | INFO     | mean y: 2571986.6777251186
[2025-06-03 03:19:56] 2025-06-03 00:47:21,965 | INFO     | -- intersect: 33839558825.095467
[2025-06-03 03:19:56] 2025-06-03 00:47:21,966 | INFO     | intersect: 33839558825.095467
[2025-06-03 03:19:56] 2025-06-03 00:47:21,966 | INFO     | chi2: 2.71606005159917
[2025-06-03 03:19:56] 2025-06-03 00:47:21,967 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 03:19:56] 2025-06-03 00:47:21,968 | INFO     | sum of deviations: -39629806865.00001
[2025-06-03 03:19:56] 2025-06-03 00:47:21,968 | INFO     | mean x: 1748904947.5
[2025-06-03 03:19:56] 2025-06-03 00:47:21,969 | INFO     | mean y: 2584400.669902913
[2025-06-03 03:19:56] 2025-06-03 00:47:21,969 | INFO     | -- intersect: 25571853349.923286
[2025-06-03 03:19:56] 2025-06-03 00:47:21,969 | INFO     | intersect: 25571853349.923286
[2025-06-03 03:19:56] 2025-06-03 00:47:21,969 | INFO     | chi2: 1.9562185552563347
[2025-06-03 03:19:56] 2025-06-03 00:47:21,969 | INFO     | current chi2=1.9562185552563347 (change=27.97587247363892 %)
[2025-06-03 03:19:56] 2025-06-03 00:47:21,970 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,971 | INFO     | sum of deviations: -37000611339.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,971 | INFO     | mean x: 1748904795.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,971 | INFO     | mean y: 2586482.5323383086
[2025-06-03 03:19:56] 2025-06-03 00:47:21,971 | INFO     | -- intersect: 25701763845.234608
[2025-06-03 03:19:56] 2025-06-03 00:47:21,972 | INFO     | intersect: 25701763845.234608
[2025-06-03 03:19:56] 2025-06-03 00:47:21,972 | INFO     | chi2: 1.955780372026769
[2025-06-03 03:19:56] 2025-06-03 00:47:21,972 | INFO     | current chi2=1.955780372026769 (change=0.022399502774794147 %)
[2025-06-03 03:19:56] 2025-06-03 00:47:21,972 | INFO     | right removable region: 200
[2025-06-03 03:19:56] 2025-06-03 00:47:21,973 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 03:19:56] 2025-06-03 00:47:21,974 | INFO     | sum of deviations: -95373506527.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,974 | INFO     | mean x: 1748905252.5
[2025-06-03 03:19:56] 2025-06-03 00:47:21,974 | INFO     | mean y: 2601170.86407767
[2025-06-03 03:19:56] 2025-06-03 00:47:21,974 | INFO     | -- intersect: 61537881234.53271
[2025-06-03 03:19:56] 2025-06-03 00:47:21,975 | INFO     | intersect: 61537881234.53271
[2025-06-03 03:19:56] 2025-06-03 00:47:21,975 | INFO     | chi2: 0.9812988951576254
[2025-06-03 03:19:56] 2025-06-03 00:47:21,975 | INFO     | current chi2=0.9812988951576254 (change=63.870500779986315 %)
[2025-06-03 03:19:56] 2025-06-03 00:47:21,975 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,977 | INFO     | sum of deviations: -94008459690.00002
[2025-06-03 03:19:56] 2025-06-03 00:47:21,977 | INFO     | mean x: 1748905405.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,977 | INFO     | mean y: 2600059.5323383086
[2025-06-03 03:19:56] 2025-06-03 00:47:21,977 | INFO     | -- intersect: 65297221807.479294
[2025-06-03 03:19:56] 2025-06-03 00:47:21,977 | INFO     | intersect: 65297221807.479294
[2025-06-03 03:19:56] 2025-06-03 00:47:21,978 | INFO     | chi2: 0.957274620553325
[2025-06-03 03:19:56] 2025-06-03 00:47:21,978 | INFO     | current chi2=0.957274620553325 (change=2.448211724567502 %)
[2025-06-03 03:19:56] 2025-06-03 00:47:21,978 | INFO     | left removable region: 20
[2025-06-03 03:19:56] 2025-06-03 00:47:21,978 | INFO     | sum of square deviations: 1808350185.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,980 | INFO     | sum of deviations: -65622043932.0
[2025-06-03 03:19:56] 2025-06-03 00:47:21,980 | INFO     | mean x: 1748905374.5
[2025-06-03 03:19:56] 2025-06-03 00:47:21,980 | INFO     | mean y: 2610165.6222222224
[2025-06-03 03:19:56] 2025-06-03 00:47:21,980 | INFO     | -- intersect: 63467500025.07713
[2025-06-03 03:19:56] 2025-06-03 00:47:21,980 | INFO     | intersect: 63467500025.07713
[2025-06-03 03:19:56] 2025-06-03 00:47:21,981 | INFO     | chi2: 0.15658078602019576
[2025-06-03 03:19:56] 2025-06-03 00:47:21,981 | INFO     | -- intersect: 63467500025.07713
[2025-06-03 03:19:56] 2025-06-03 00:47:21,981 | INFO     | current memory leak: -36.29 B/s (using 180 data points, chi2=0.16)
[2025-06-03 03:19:56] 2025-06-03 00:47:21,982 | INFO     | ..............................
[2025-06-03 03:19:56] 2025-06-03 00:47:21,982 | INFO     | . Timing measurements:
[2025-06-03 03:19:56] 2025-06-03 00:47:21,982 | INFO     | . get job = 0 s
[2025-06-03 03:19:56] 2025-06-03 00:47:21,988 | INFO     | . initial setup = 2 s
[2025-06-03 03:19:56] 2025-06-03 00:47:21,988 | INFO     | . payload setup = 14 s
[2025-06-03 03:19:56] 2025-06-03 00:47:21,988 | INFO     | . stage-in = 0 s
[2025-06-03 03:19:56] 2025-06-03 00:47:21,988 | INFO     | . payload execution = 12857 s
[2025-06-03 03:19:56] 2025-06-03 00:47:21,988 | INFO     | . stage-out = 3 s
[2025-06-03 03:19:56] 2025-06-03 00:47:21,988 | INFO     | . log creation = 1 s
[2025-06-03 03:19:56] 2025-06-03 00:47:21,988 | INFO     | ..............................
[2025-06-03 03:19:56] 2025-06-03 00:47:22,142 | INFO     | 
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | job summary report
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | --------------------------------------------------
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | PanDA job id: 6677382286
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | task id: 45006595
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | errors: (none)
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | pilot state: finished 
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | transexitcode: 0
[2025-06-03 03:19:56] 2025-06-03 00:47:22,143 | INFO     | exeerrorcode: 0
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | exeerrordiag: 
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | exitcode: 0
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | exitmsg: OK
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | cpuconsumptiontime: 48765 s
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | nevents: 400
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | neventsw: 0
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | pid: 2715
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | pgrp: 2715
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | corecount: 8
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | event service: False
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | sizes: {0: 2404952, 1: 2405207, 2: 2405207, 9: 2405441, 12: 2405469, 12875: 2434805, 12879: 2443776, 12880: 2443832, 12982: 2444002}
[2025-06-03 03:19:56] 2025-06-03 00:47:22,144 | INFO     | --------------------------------------------------
[2025-06-03 03:19:56] 2025-06-03 00:47:22,145 | INFO     | 
[2025-06-03 03:19:56] 2025-06-03 00:47:22,145 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-06-03 03:19:56] 2025-06-03 00:47:22,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 03:19:56] 2025-06-03 00:47:22,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,632 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 03:19:56] 2025-06-03 00:47:22,632 | INFO     | job 6677382286 has completed (purged errors)
[2025-06-03 03:19:56] 2025-06-03 00:47:22,632 | INFO     | overall cleanup function is called
[2025-06-03 03:19:56] 2025-06-03 00:47:23,641 | INFO     | --- collectZombieJob: --- 10, [2715]
[2025-06-03 03:19:56] 2025-06-03 00:47:23,642 | INFO     | zombie collector waiting for pid 2715
[2025-06-03 03:19:56] 2025-06-03 00:47:23,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 03:19:56] 2025-06-03 00:47:23,642 | INFO     | collected zombie processes
[2025-06-03 03:19:56] 2025-06-03 00:47:23,642 | INFO     | will attempt to kill all subprocesses of pid=2715
[2025-06-03 03:19:56] 2025-06-03 00:47:23,766 | INFO     | process IDs to be killed: [2715] (in reverse order)
[2025-06-03 03:19:56] 2025-06-03 00:47:24,229 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 03:19:56] 2025-06-03 00:47:24,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 03:19:56] 2025-06-03 00:47:24,233 | INFO     | did not find any defunct processes belonging to 2715
[2025-06-03 03:19:56] 2025-06-03 00:47:24,236 | INFO     | did not find any defunct processes belonging to 2715
[2025-06-03 03:19:56] 2025-06-03 00:47:24,237 | INFO     | ready for new job
[2025-06-03 03:19:56] 2025-06-03 00:47:24,237 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 03:19:56] 2025-06-03 00:47:24,239 | INFO     | **************************************
[2025-06-03 03:19:56] 2025-06-03 00:47:24,239 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 03:19:56] 2025-06-03 00:47:24,239 | INFO     | **************************************
[2025-06-03 03:19:56] 2025-06-03 00:47:24,239 | INFO     | 
[2025-06-03 03:19:56] 2025-06-03 00:47:24,240 | INFO     | pilot is running in a VM
[2025-06-03 03:19:56] 2025-06-03 00:47:24,240 | INFO     | architecture information:
[2025-06-03 03:19:56] 2025-06-03 00:47:24,246 | INFO     | executing command: cat /etc/os-release
[2025-06-03 03:19:56] 2025-06-03 00:47:24,548 | INFO     | cat /etc/os-release:
[2025-06-03 03:19:56] NAME="CentOS Linux"
[2025-06-03 03:19:56] VERSION="7 (Core)"
[2025-06-03 03:19:56] ID="centos"
[2025-06-03 03:19:56] ID_LIKE="rhel fedora"
[2025-06-03 03:19:56] VERSION_ID="7"
[2025-06-03 03:19:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 03:19:56] ANSI_COLOR="0;31"
[2025-06-03 03:19:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 03:19:56] HOME_URL="https://www.centos.org/"
[2025-06-03 03:19:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 03:19:56] 
[2025-06-03 03:19:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 03:19:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 03:19:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 03:19:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 03:19:56] 
[2025-06-03 03:19:56] 2025-06-03 00:47:24,548 | INFO     | **************************************
[2025-06-03 03:19:56] 2025-06-03 00:47:25,052 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-06-03 03:19:56] 2025-06-03 00:47:25,301 | INFO     | sufficient remaining disk space (496604545024 B)
[2025-06-03 03:19:56] 2025-06-03 00:47:25,302 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 03:19:56] 2025-06-03 00:47:25,302 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 03:19:56] 2025-06-03 00:47:25,302 | INFO     | update_server=False
[2025-06-03 03:19:56] 2025-06-03 00:47:25,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 03:19:56] 2025-06-03 00:47:25,303 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 03:19:56] 2025-06-03 00:47:25,364 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 03:19:56] 2025-06-03 00:47:25,489 | INFO     | all data control threads have been joined
[2025-06-03 03:19:56] 2025-06-03 00:47:25,577 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 03:19:56] 2025-06-03 00:47:25,578 | INFO     | aborting loop
[2025-06-03 03:19:56] 2025-06-03 00:47:26,077 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 03:19:56] 2025-06-03 00:47:26,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 03:19:56] 2025-06-03 00:47:26,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 03:19:56] 2025-06-03 00:47:26,309 | INFO     | [job] retrieve thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:26,411 | INFO     | all job control threads have been joined
[2025-06-03 03:19:56] 2025-06-03 00:47:26,496 | INFO     | [data] control thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:26,519 | INFO     | all payload control threads have been joined
[2025-06-03 03:19:56] 2025-06-03 00:47:26,581 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:26,584 | INFO     | [job] job monitor thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:26,841 | INFO     | [data] copytool_in thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:26,877 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,103 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,122 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 03:19:56] 2025-06-03 00:47:27,311 | INFO     | [data] copytool_out thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,418 | INFO     | [job] control thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,429 | INFO     | [job] validate thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,525 | INFO     | [payload] control thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,588 | INFO     | [payload] failed_post thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:27,698 | INFO     | [payload] validate_post thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:28,167 | INFO     | [job] queue monitor thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:29,373 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 03:19:56] 2025-06-03 00:47:31,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998899423040)>', '<ExcThread(monitor, started 139998460364544)>']
[2025-06-03 03:19:56] 2025-06-03 00:47:32,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 03:19:56] 2025-06-03 00:47:32,113 | INFO     | [monitor] control thread has ended
[2025-06-03 03:19:56] 2025-06-03 00:47:36,336 | INFO     | all workflow threads have been joined
[2025-06-03 03:19:56] 2025-06-03 00:47:36,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 03:19:56] 2025-06-03 00:47:36,337 | INFO     | traces error code: 0
[2025-06-03 03:19:56] 2025-06-03 00:47:36,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 03:19:56] 2025-06-03 00:47:36,804 [wrapper] ==== pilot stdout END ====
[2025-06-03 03:19:56] 2025-06-03 00:47:36,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 03:19:56] 2025-06-03 00:47:37,017 [wrapper] pilotpid: 26536
[2025-06-03 03:19:56] 2025-06-03 00:47:37,130 [wrapper] Pilot exit status: 0
[2025-06-03 03:19:56] 2025-06-03 00:47:37,727 [wrapper] pandaids: 6677382286
[2025-06-03 03:19:56] 2025-06-03 00:47:38,526 [wrapper] cleanup supervisor_pilot 25322 26537
[2025-06-03 03:19:56] 2025-06-03 00:47:38,666 [wrapper] Test setup, not cleaning
[2025-06-03 03:19:56] 2025-06-03 00:47:38,736 [wrapper] apfmon messages muted
[2025-06-03 03:19:56] 2025-06-03 00:47:38,843 [wrapper] ==== wrapper stdout END ====
[2025-06-03 03:19:56] 2025-06-03 00:47:38,927 [wrapper] ==== wrapper stderr END ====
[2025-06-03 03:19:56]  *** Error codes and diagnostics ***
[2025-06-03 03:19:56]     "exeErrorCode": 0,
[2025-06-03 03:19:56]     "exeErrorDiag": "",
[2025-06-03 03:19:56]     "pilotErrorCode": 0,
[2025-06-03 03:19:56]     "pilotErrorDiag": "",
[2025-06-03 03:19:56]  *** Listing of results directory ***
[2025-06-03 03:19:56] total 388036
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:59 pilot3.tar.gz
[2025-06-03 03:19:56] -rwx------. 1 boinc boinc     37140 Jun  2 17:59 runpilot2-wrapper.sh
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:59 queuedata.json
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc       100 Jun  2 23:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 03:19:56] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 23:10 run_atlas
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc       105 Jun  2 23:10 job.xml
[2025-06-03 03:19:56] -rw-r--r--. 2 boinc boinc 213101199 Jun  2 23:10 EVNT.45006593._000119.pool.root.1
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc      6392 Jun  2 23:10 init_data.xml
[2025-06-03 03:19:56] -rw-r--r--. 2 boinc boinc     15093 Jun  2 23:10 start_atlas.sh
[2025-06-03 03:19:56] drwxrwx--x. 2 boinc boinc        68 Jun  2 23:10 shared
[2025-06-03 03:19:56] -rw-r--r--. 2 boinc boinc    508874 Jun  2 23:10 input.tar.gz
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc         0 Jun  2 23:10 boinc_lockfile
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc      2522 Jun  2 23:10 pandaJob.out
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc    987975 Jun  2 23:10 agis_schedconf.cvmfs.json
[2025-06-03 03:19:56] drwx------. 4 boinc boinc      4096 Jun  2 23:10 pilot3
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc 177407813 Jun  3 02:44 HITS.45006595._002969.pool.root.1
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc       531 Jun  3 02:44 boinc_task_state.xml
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc      1015 Jun  3 02:45 memory_monitor_summary.json
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc   1603667 Jun  3 02:45 agis_ddmendpoints.agis.ALL.json
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc    380324 Jun  3 02:45 log.45006595._002969.job.log.tgz.1
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc        95 Jun  3 02:46 pilot_heartbeat.json
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc      7686 Jun  3 02:47 heartbeat.json
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc      4417 Jun  3 02:47 pilotlog.txt
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc   1126848 Jun  3 02:47 log.45006595._002969.job.log.1
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc       357 Jun  3 02:47 output.list
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc       620 Jun  3 02:47 runtime_log
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc   1525760 Jun  3 02:47 result.tar.gz
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc      8673 Jun  3 02:47 runtime_log.err
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc       656 Jun  3 02:47 NoRMDmpkMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxEfKDm5Mfgfm.diag
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc      8192 Jun  3 03:19 boinc_mmap_file
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc        28 Jun  3 03:19 wrapper_checkpoint.txt
[2025-06-03 03:19:56] -rw-r--r--. 1 boinc boinc     20489 Jun  3 03:19 stderr.txt
[2025-06-03 03:19:56] HITS file was successfully produced:
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc 177407813 Jun  3 02:44 shared/HITS.pool.root.1
[2025-06-03 03:19:56]  *** Contents of shared directory: ***
[2025-06-03 03:19:56] total 383368
[2025-06-03 03:19:56] -rw-r--r--. 2 boinc boinc 213101199 Jun  2 23:10 ATLAS.root_0
[2025-06-03 03:19:56] -rw-r--r--. 2 boinc boinc     15093 Jun  2 23:10 start_atlas.sh
[2025-06-03 03:19:56] -rw-r--r--. 2 boinc boinc    508874 Jun  2 23:10 input.tar.gz
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc 177407813 Jun  3 02:44 HITS.pool.root.1
[2025-06-03 03:19:56] -rw-------. 1 boinc boinc   1525760 Jun  3 02:47 result.tar.gz
03:19:58 (22545): run_atlas exited; CPU time 48932.440212
03:19:58 (22545): called boinc_finish(0)

</stderr_txt>
]]>

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