Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:50:03 (7418): wrapper (7.7.26015): starting
18:50:03 (7418): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 18:50:03] Arguments: --nthreads 8
[2025-06-02 18:50:03] Threads: 8
[2025-06-02 18:50:03] Checking for CVMFS
[2025-06-02 18:50:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 18:50:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 18:50:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 18:50:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 18:50:05] 2.11.2.0 6418 30602 93340 146713 3 114 19404592 25165825 4148 130560 0 15662378 99.734 19268513 2145 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 18:50:05] CVMFS is ok
[2025-06-02 18:50:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 18:50:05] Checking for apptainer binary...
[2025-06-02 18:50:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 18:50:05] Running /usr/bin/apptainer --version
[2025-06-02 18:50:05] apptainer version 1.3.2-1.el7
[2025-06-02 18:50:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:50:09] cg-vwn357.simple-grid.lan
[2025-06-02 18:50:09] apptainer works
[2025-06-02 18:50:09] Set ATHENA_PROC_NUMBER=8
[2025-06-02 18:50:09] Set ATHENA_CORE_NUMBER=8
[2025-06-02 18:50:09] Starting ATLAS job with PandaID=6677381793
[2025-06-02 18:50:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:52:29]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:52:29] 2025-06-02 20:18:51,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:52:29] 2025-06-02 20:18:51,248 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:52:29] 2025-06-02 20:18:51,248 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:52:29] 2025-06-02 20:18:51,251 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:52:29] 2025-06-02 20:18:51,252 | INFO     | sum of square deviations: 2555770710.5
[2025-06-02 22:52:29] 2025-06-02 20:18:51,253 | INFO     | sum of deviations: -13651649787.5
[2025-06-02 22:52:29] 2025-06-02 20:18:51,253 | INFO     | mean x: 1748889251.5
[2025-06-02 22:52:29] 2025-06-02 20:18:51,253 | INFO     | mean y: 2488515.0643564356
[2025-06-02 22:52:29] 2025-06-02 20:18:51,254 | INFO     | -- intersect: 9344180819.66478
[2025-06-02 22:52:29] 2025-06-02 20:18:51,254 | INFO     | intersect: 9344180819.66478
[2025-06-02 22:52:29] 2025-06-02 20:18:51,254 | INFO     | chi2: 2.64073329188476
[2025-06-02 22:52:29] 2025-06-02 20:18:51,254 | INFO     | sum of square deviations: 2370641658.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,256 | INFO     | sum of deviations: 23493295.999998413
[2025-06-02 22:52:29] 2025-06-02 20:18:51,256 | INFO     | mean x: 1748889099.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,256 | INFO     | mean y: 2499559.9847715735
[2025-06-02 22:52:29] 2025-06-02 20:18:51,256 | INFO     | -- intersect: -14832105.952728597
[2025-06-02 22:52:29] 2025-06-02 20:18:51,256 | INFO     | intersect: -14832105.952728597
[2025-06-02 22:52:29] 2025-06-02 20:18:51,256 | INFO     | chi2: 1.875316079412102
[2025-06-02 22:52:29] 2025-06-02 20:18:51,257 | INFO     | current chi2=1.875316079412102 (change=28.985025289182452 %)
[2025-06-02 22:52:29] 2025-06-02 20:18:51,257 | INFO     | sum of square deviations: 2194675568.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,258 | INFO     | sum of deviations: 139167260.5000082
[2025-06-02 22:52:29] 2025-06-02 20:18:51,259 | INFO     | mean x: 1748888946.5
[2025-06-02 22:52:29] 2025-06-02 20:18:51,259 | INFO     | mean y: 2499660.2552083335
[2025-06-02 22:52:29] 2025-06-02 20:18:51,259 | INFO     | -- intersect: -108399685.02932003
[2025-06-02 22:52:29] 2025-06-02 20:18:51,259 | INFO     | intersect: -108399685.02932003
[2025-06-02 22:52:29] 2025-06-02 20:18:51,259 | INFO     | chi2: 1.8755956152690247
[2025-06-02 22:52:29] 2025-06-02 20:18:51,259 | INFO     | current chi2=1.8755956152690247 (change=-0.014906066235532138 %)
[2025-06-02 22:52:29] 2025-06-02 20:18:51,259 | INFO     | right removable region: 191
[2025-06-02 22:52:29] 2025-06-02 20:18:51,260 | INFO     | sum of square deviations: 2370641658.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,261 | INFO     | sum of deviations: -48674516106.99999
[2025-06-02 22:52:29] 2025-06-02 20:18:51,262 | INFO     | mean x: 1748889404.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,262 | INFO     | mean y: 2517094.4416243653
[2025-06-02 22:52:29] 2025-06-02 20:18:51,262 | INFO     | -- intersect: 35911084370.76999
[2025-06-02 22:52:29] 2025-06-02 20:18:51,262 | INFO     | intersect: 35911084370.76999
[2025-06-02 22:52:29] 2025-06-02 20:18:51,262 | INFO     | chi2: 0.9836742491031241
[2025-06-02 22:52:29] 2025-06-02 20:18:51,262 | INFO     | current chi2=0.9836742491031241 (change=62.74995842533381 %)
[2025-06-02 22:52:29] 2025-06-02 20:18:51,263 | INFO     | sum of square deviations: 2194675568.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,264 | INFO     | sum of deviations: -46654517424.499985
[2025-06-02 22:52:29] 2025-06-02 20:18:51,264 | INFO     | mean x: 1748889556.5
[2025-06-02 22:52:29] 2025-06-02 20:18:51,264 | INFO     | mean y: 2515297.7135416665
[2025-06-02 22:52:29] 2025-06-02 20:18:51,264 | INFO     | -- intersect: 37180492524.48481
[2025-06-02 22:52:29] 2025-06-02 20:18:51,265 | INFO     | intersect: 37180492524.48481
[2025-06-02 22:52:29] 2025-06-02 20:18:51,265 | INFO     | chi2: 0.9694248293580421
[2025-06-02 22:52:29] 2025-06-02 20:18:51,265 | INFO     | current chi2=0.9694248293580421 (change=1.4485913154760377 %)
[2025-06-02 22:52:29] 2025-06-02 20:18:51,265 | INFO     | left removable region: 20
[2025-06-02 22:52:29] 2025-06-02 20:18:51,265 | INFO     | sum of square deviations: 1550429070.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,267 | INFO     | sum of deviations: -20340997231.000004
[2025-06-02 22:52:29] 2025-06-02 20:18:51,267 | INFO     | mean x: 1748889526.0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,267 | INFO     | mean y: 2516596.5321637425
[2025-06-02 22:52:29] 2025-06-02 20:18:51,267 | INFO     | -- intersect: 22947234090.56813
[2025-06-02 22:52:29] 2025-06-02 20:18:51,267 | INFO     | intersect: 22947234090.56813
[2025-06-02 22:52:29] 2025-06-02 20:18:51,267 | INFO     | chi2: 0.14698433082495468
[2025-06-02 22:52:29] 2025-06-02 20:18:51,267 | INFO     | -- intersect: 22947234090.56813
[2025-06-02 22:52:29] 2025-06-02 20:18:51,268 | INFO     | current memory leak: -13.12 B/s (using 171 data points, chi2=0.15)
[2025-06-02 22:52:29] 2025-06-02 20:18:51,268 | INFO     | ..............................
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . Timing measurements:
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . get job = 0 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . initial setup = 2 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . payload setup = 20 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . stage-in = 0 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . payload execution = 12349 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . stage-out = 4 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | . log creation = 1 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,269 | INFO     | ..............................
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | 
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | job summary report
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | --------------------------------------------------
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | PanDA job id: 6677381793
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | task id: 45006595
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | errors: (none)
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | pilot state: finished 
[2025-06-02 22:52:29] 2025-06-02 20:18:51,402 | INFO     | transexitcode: 0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | exeerrorcode: 0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | exeerrordiag: 
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | exitcode: 0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | exitmsg: OK
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | cpuconsumptiontime: 46960 s
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | nevents: 400
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | neventsw: 0
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | pid: 22376
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | pgrp: 22376
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | corecount: 8
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | event service: False
[2025-06-02 22:52:29] 2025-06-02 20:18:51,403 | INFO     | sizes: {0: 2404950, 1: 2405205, 2: 2405205, 10: 2405439, 12: 2405467, 12374: 2434608, 12379: 2443579, 12381: 2443635, 12476: 2443805}
[2025-06-02 22:52:29] 2025-06-02 20:18:51,404 | INFO     | --------------------------------------------------
[2025-06-02 22:52:29] 2025-06-02 20:18:51,404 | INFO     | 
[2025-06-02 22:52:29] 2025-06-02 20:18:51,404 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-06-02 22:52:29] 2025-06-02 20:18:52,155 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,155 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,155 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,156 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | job 6677381793 has completed (purged errors)
[2025-06-02 22:52:29] 2025-06-02 20:18:52,157 | INFO     | overall cleanup function is called
[2025-06-02 22:52:29] 2025-06-02 20:18:53,166 | INFO     | --- collectZombieJob: --- 10, [22376]
[2025-06-02 22:52:29] 2025-06-02 20:18:53,166 | INFO     | zombie collector waiting for pid 22376
[2025-06-02 22:52:29] 2025-06-02 20:18:53,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:52:29] 2025-06-02 20:18:53,167 | INFO     | collected zombie processes
[2025-06-02 22:52:29] 2025-06-02 20:18:53,167 | INFO     | will attempt to kill all subprocesses of pid=22376
[2025-06-02 22:52:29] 2025-06-02 20:18:53,299 | INFO     | process IDs to be killed: [22376] (in reverse order)
[2025-06-02 22:52:29] 2025-06-02 20:18:54,100 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:52:29] 2025-06-02 20:18:54,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:52:29] 2025-06-02 20:18:54,104 | INFO     | did not find any defunct processes belonging to 22376
[2025-06-02 22:52:29] 2025-06-02 20:18:54,106 | INFO     | did not find any defunct processes belonging to 22376
[2025-06-02 22:52:29] 2025-06-02 20:18:54,107 | INFO     | ready for new job
[2025-06-02 22:52:29] 2025-06-02 20:18:54,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:52:29] 2025-06-02 20:18:54,109 | INFO     | **************************************
[2025-06-02 22:52:29] 2025-06-02 20:18:54,109 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:52:29] 2025-06-02 20:18:54,109 | INFO     | **************************************
[2025-06-02 22:52:29] 2025-06-02 20:18:54,109 | INFO     | 
[2025-06-02 22:52:29] 2025-06-02 20:18:54,110 | INFO     | pilot is running in a VM
[2025-06-02 22:52:29] 2025-06-02 20:18:54,110 | INFO     | architecture information:
[2025-06-02 22:52:29] 2025-06-02 20:18:54,115 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:52:29] 2025-06-02 20:18:54,321 | INFO     | cat /etc/os-release:
[2025-06-02 22:52:29] NAME="CentOS Linux"
[2025-06-02 22:52:29] VERSION="7 (Core)"
[2025-06-02 22:52:29] ID="centos"
[2025-06-02 22:52:29] ID_LIKE="rhel fedora"
[2025-06-02 22:52:29] VERSION_ID="7"
[2025-06-02 22:52:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:52:29] ANSI_COLOR="0;31"
[2025-06-02 22:52:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:52:29] HOME_URL="https://www.centos.org/"
[2025-06-02 22:52:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:52:29] 
[2025-06-02 22:52:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:52:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:52:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:52:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:52:29] 
[2025-06-02 22:52:29] 2025-06-02 20:18:54,322 | INFO     | **************************************
[2025-06-02 22:52:29] 2025-06-02 20:18:54,826 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-06-02 22:52:29] 2025-06-02 20:18:55,093 | INFO     | sufficient remaining disk space (496721985536 B)
[2025-06-02 22:52:29] 2025-06-02 20:18:55,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:52:29] 2025-06-02 20:18:55,094 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:52:29] 2025-06-02 20:18:55,094 | INFO     | update_server=False
[2025-06-02 22:52:29] 2025-06-02 20:18:55,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:52:29] 2025-06-02 20:18:55,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:52:29] 2025-06-02 20:18:55,096 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:52:29] 2025-06-02 20:18:55,096 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:52:29] 2025-06-02 20:18:55,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:52:29] 2025-06-02 20:18:55,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:52:29] 2025-06-02 20:18:55,156 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-02 22:52:29] 2025-06-02 20:18:55,157 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-02 22:52:29] 2025-06-02 20:18:55,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:52:29] 2025-06-02 20:18:55,157 | INFO     | will abort loop
[2025-06-02 22:52:29] 2025-06-02 20:18:55,200 | INFO     | all data control threads have been joined
[2025-06-02 22:52:29] 2025-06-02 20:18:55,983 | INFO     | all job control threads have been joined
[2025-06-02 22:52:29] 2025-06-02 20:18:56,100 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,164 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,207 | INFO     | [data] control thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,272 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,418 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:52:29] 2025-06-02 20:18:56,426 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,459 | INFO     | all payload control threads have been joined
[2025-06-02 22:52:29] 2025-06-02 20:18:56,531 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:52:29] 2025-06-02 20:18:56,712 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,931 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:56,989 | INFO     | [job] control thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:57,061 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:57,101 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:57,272 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:57,423 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:57,465 | INFO     | [payload] control thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:18:57,466 | INFO     | [job] validate thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:19:00,561 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:52:29] 2025-06-02 20:19:00,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140036482299712)>', '<ExcThread(monitor, started 140036049721088)>']
[2025-06-02 22:52:29] 2025-06-02 20:19:01,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:52:29] 2025-06-02 20:19:01,132 | INFO     | [monitor] control thread has ended
[2025-06-02 22:52:29] 2025-06-02 20:19:06,002 | INFO     | all workflow threads have been joined
[2025-06-02 22:52:29] 2025-06-02 20:19:06,003 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:52:29] 2025-06-02 20:19:06,003 | INFO     | traces error code: 0
[2025-06-02 22:52:29] 2025-06-02 20:19:06,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:52:29] 2025-06-02 20:19:06,226 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:52:29] 2025-06-02 20:19:06,240 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:52:29] 2025-06-02 20:19:06,256 [wrapper] pilotpid: 11863
[2025-06-02 22:52:29] 2025-06-02 20:19:06,272 [wrapper] Pilot exit status: 0
[2025-06-02 22:52:29] 2025-06-02 20:19:06,834 [wrapper] pandaids: 6677381793
[2025-06-02 22:52:29] 2025-06-02 20:19:07,638 [wrapper] cleanup supervisor_pilot 19008 11864
[2025-06-02 22:52:29] 2025-06-02 20:19:07,745 [wrapper] Test setup, not cleaning
[2025-06-02 22:52:29] 2025-06-02 20:19:07,801 [wrapper] apfmon messages muted
[2025-06-02 22:52:29] 2025-06-02 20:19:07,898 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:52:29] 2025-06-02 20:19:07,955 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:52:29]  *** Error codes and diagnostics ***
[2025-06-02 22:52:29]     "exeErrorCode": 0,
[2025-06-02 22:52:29]     "exeErrorDiag": "",
[2025-06-02 22:52:29]     "pilotErrorCode": 0,
[2025-06-02 22:52:29]     "pilotErrorDiag": "",
[2025-06-02 22:52:29]  *** Listing of results directory ***
[2025-06-02 22:52:30] total 388120
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:57 queuedata.json
[2025-06-02 22:52:30] -rwx------. 1 boinc boinc     37140 Jun  2 17:58 runpilot2-wrapper.sh
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc       100 Jun  2 18:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:52:30] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 18:50 run_atlas
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc       105 Jun  2 18:50 job.xml
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc      6393 Jun  2 18:50 init_data.xml
[2025-06-02 22:52:30] -rw-r--r--. 2 boinc boinc 215581377 Jun  2 18:50 EVNT.45006593._000107.pool.root.1
[2025-06-02 22:52:30] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:50 start_atlas.sh
[2025-06-02 22:52:30] drwxrwx--x. 2 boinc boinc        68 Jun  2 18:50 shared
[2025-06-02 22:52:30] -rw-r--r--. 2 boinc boinc    508880 Jun  2 18:50 input.tar.gz
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc         0 Jun  2 18:50 boinc_lockfile
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc      2520 Jun  2 18:50 pandaJob.out
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc    988298 Jun  2 18:50 agis_schedconf.cvmfs.json
[2025-06-02 22:52:30] drwx------. 4 boinc boinc      4096 Jun  2 18:50 pilot3
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc 175111244 Jun  2 22:15 HITS.45006595._002667.pool.root.1
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc       530 Jun  2 22:16 boinc_task_state.xml
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc      1016 Jun  2 22:17 memory_monitor_summary.json
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc   1603667 Jun  2 22:17 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc    374656 Jun  2 22:17 log.45006595._002667.job.log.tgz.1
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc        95 Jun  2 22:18 pilot_heartbeat.json
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc      7684 Jun  2 22:18 heartbeat.json
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc      4726 Jun  2 22:19 pilotlog.txt
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc   1085598 Jun  2 22:19 log.45006595._002667.job.log.1
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc       357 Jun  2 22:19 output.list
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc       620 Jun  2 22:19 runtime_log
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc   1474560 Jun  2 22:19 result.tar.gz
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc      8673 Jun  2 22:19 runtime_log.err
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc       657 Jun  2 22:19 mTqKDmljMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOEfKDm1m4lkn.diag
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:52 boinc_mmap_file
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:52 wrapper_checkpoint.txt
[2025-06-02 22:52:30] -rw-r--r--. 1 boinc boinc     20515 Jun  2 22:52 stderr.txt
[2025-06-02 22:52:30] HITS file was successfully produced:
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc 175111244 Jun  2 22:15 shared/HITS.pool.root.1
[2025-06-02 22:52:30]  *** Contents of shared directory: ***
[2025-06-02 22:52:30] total 383496
[2025-06-02 22:52:30] -rw-r--r--. 2 boinc boinc 215581377 Jun  2 18:50 ATLAS.root_0
[2025-06-02 22:52:30] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:50 start_atlas.sh
[2025-06-02 22:52:30] -rw-r--r--. 2 boinc boinc    508880 Jun  2 18:50 input.tar.gz
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc 175111244 Jun  2 22:15 HITS.pool.root.1
[2025-06-02 22:52:30] -rw-------. 1 boinc boinc   1474560 Jun  2 22:19 result.tar.gz
22:52:31 (7418): run_atlas exited; CPU time 47108.548926
22:52:31 (7418): called boinc_finish(0)

</stderr_txt>
]]>

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