Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:49:10 (6753): wrapper (7.7.26015): starting
06:49:10 (6753): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:49:10] Arguments: --nthreads 8
[2025-06-03 06:49:10] Threads: 8
[2025-06-03 06:49:10] Checking for CVMFS
[2025-06-03 06:49:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:49:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:49:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:49:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:49:14] 2.11.2.0 23942 31305 101528 146729 3 16 21241728 25165824 4632 130560 0 16974688 99.857 16114035 1808 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:49:14] CVMFS is ok
[2025-06-03 06:49:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:49:14] Checking for apptainer binary...
[2025-06-03 06:49:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:49:14] Running /usr/bin/apptainer --version
[2025-06-03 06:49:14] apptainer version 1.3.2-1.el7
[2025-06-03 06:49:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:58:49] cg-vwn380.simple-grid.lan
[2025-06-03 06:58:49] apptainer works
[2025-06-03 06:58:49] Set ATHENA_PROC_NUMBER=8
[2025-06-03 06:58:49] Set ATHENA_CORE_NUMBER=8
[2025-06-03 06:58:49] Starting ATLAS job with PandaID=6677381752
[2025-06-03 06:58:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:43:20]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:43:20] 2025-06-03 08:49:47,431 | INFO     | extracted standard info from prmon json
[2025-06-03 11:43:20] 2025-06-03 08:49:47,431 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:43:20] 2025-06-03 08:49:47,431 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:43:20] 2025-06-03 08:49:47,431 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:43:20] 2025-06-03 08:49:47,431 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:43:20] 2025-06-03 08:49:47,436 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:43:20] 2025-06-03 08:49:47,437 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,438 | INFO     | sum of deviations: 38784328564.999985
[2025-06-03 11:43:20] 2025-06-03 08:49:47,439 | INFO     | mean x: 1748933946.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,439 | INFO     | mean y: 2474903.697674419
[2025-06-03 11:43:20] 2025-06-03 08:49:47,439 | INFO     | -- intersect: -22008803973.65578
[2025-06-03 11:43:20] 2025-06-03 08:49:47,439 | INFO     | intersect: -22008803973.65578
[2025-06-03 11:43:20] 2025-06-03 08:49:47,439 | INFO     | chi2: 7.840989547237795
[2025-06-03 11:43:20] 2025-06-03 08:49:47,440 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 11:43:20] 2025-06-03 08:49:47,442 | INFO     | sum of deviations: 52783130511.50001
[2025-06-03 11:43:20] 2025-06-03 08:49:47,442 | INFO     | mean x: 1748933793.5
[2025-06-03 11:43:20] 2025-06-03 08:49:47,442 | INFO     | mean y: 2484874.1761904764
[2025-06-03 11:43:20] 2025-06-03 08:49:47,442 | INFO     | -- intersect: -32144633802.28708
[2025-06-03 11:43:20] 2025-06-03 08:49:47,442 | INFO     | intersect: -32144633802.28708
[2025-06-03 11:43:20] 2025-06-03 08:49:47,443 | INFO     | chi2: 7.147934833830074
[2025-06-03 11:43:20] 2025-06-03 08:49:47,443 | INFO     | current chi2=7.147934833830074 (change=8.838867967269119 %)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,443 | INFO     | right removable region: 209
[2025-06-03 11:43:20] 2025-06-03 08:49:47,443 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 11:43:20] 2025-06-03 08:49:47,445 | INFO     | sum of deviations: -36944524736.499985
[2025-06-03 11:43:20] 2025-06-03 08:49:47,445 | INFO     | mean x: 1748934098.5
[2025-06-03 11:43:20] 2025-06-03 08:49:47,445 | INFO     | mean y: 2529842.0904761907
[2025-06-03 11:43:20] 2025-06-03 08:49:47,445 | INFO     | -- intersect: 22503283714.758247
[2025-06-03 11:43:20] 2025-06-03 08:49:47,446 | INFO     | intersect: 22503283714.758247
[2025-06-03 11:43:20] 2025-06-03 08:49:47,446 | INFO     | chi2: 2.800493871551696
[2025-06-03 11:43:20] 2025-06-03 08:49:47,446 | INFO     | current chi2=2.800493871551696 (change=64.28392290692126 %)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,447 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,448 | INFO     | sum of deviations: -79249277768.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,448 | INFO     | mean x: 1748934251.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,448 | INFO     | mean y: 2561888.1463414636
[2025-06-03 11:43:20] 2025-06-03 08:49:47,448 | INFO     | -- intersect: 51887239575.7939
[2025-06-03 11:43:20] 2025-06-03 08:49:47,449 | INFO     | intersect: 51887239575.7939
[2025-06-03 11:43:20] 2025-06-03 08:49:47,449 | INFO     | chi2: 1.0436431610692014
[2025-06-03 11:43:20] 2025-06-03 08:49:47,449 | INFO     | current chi2=1.0436431610692014 (change=62.733603109406545 %)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,449 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,451 | INFO     | sum of deviations: -81523633732.00002
[2025-06-03 11:43:20] 2025-06-03 08:49:47,451 | INFO     | mean x: 1748934403.5
[2025-06-03 11:43:20] 2025-06-03 08:49:47,451 | INFO     | mean y: 2563646.13
[2025-06-03 11:43:20] 2025-06-03 08:49:47,451 | INFO     | -- intersect: 57480278900.8474
[2025-06-03 11:43:20] 2025-06-03 08:49:47,451 | INFO     | intersect: 57480278900.8474
[2025-06-03 11:43:20] 2025-06-03 08:49:47,452 | INFO     | chi2: 0.9825832486772327
[2025-06-03 11:43:20] 2025-06-03 08:49:47,452 | INFO     | current chi2=0.9825832486772327 (change=5.850650363043005 %)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,452 | INFO     | left removable region: 30
[2025-06-03 11:43:20] 2025-06-03 08:49:47,452 | INFO     | sum of square deviations: 1778377530.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,453 | INFO     | sum of deviations: -50430425202.00001
[2025-06-03 11:43:20] 2025-06-03 08:49:47,454 | INFO     | mean x: 1748934678.0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,454 | INFO     | mean y: 2562998.6927374303
[2025-06-03 11:43:20] 2025-06-03 08:49:47,454 | INFO     | -- intersect: 49598061127.85712
[2025-06-03 11:43:20] 2025-06-03 08:49:47,454 | INFO     | intersect: 49598061127.85712
[2025-06-03 11:43:20] 2025-06-03 08:49:47,454 | INFO     | chi2: 0.18425845217615772
[2025-06-03 11:43:20] 2025-06-03 08:49:47,454 | INFO     | -- intersect: 49598061127.85712
[2025-06-03 11:43:20] 2025-06-03 08:49:47,454 | INFO     | current memory leak: -28.36 B/s (using 179 data points, chi2=0.18)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,455 | INFO     | ..............................
[2025-06-03 11:43:20] 2025-06-03 08:49:47,455 | INFO     | . Timing measurements:
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | . get job = 0 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | . initial setup = 11 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | . payload setup = 158 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | . stage-in = 0 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | . payload execution = 13208 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | . stage-out = 3 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | . log creation = 0 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,456 | INFO     | ..............................
[2025-06-03 11:43:20] 2025-06-03 08:49:47,652 | INFO     | 
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | job summary report
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | --------------------------------------------------
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | PanDA job id: 6677381752
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | task id: 45006595
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | errors: (none)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | pilot state: finished 
[2025-06-03 11:43:20] 2025-06-03 08:49:47,653 | INFO     | transexitcode: 0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | exeerrorcode: 0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | exeerrordiag: 
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | exitcode: 0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | exitmsg: OK
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | cpuconsumptiontime: 49023 s
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | nevents: 400
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | neventsw: 0
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | pid: 29948
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | pgrp: 29948
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | corecount: 8
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | event service: False
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | sizes: {0: 2404950, 1: 2405205, 12: 2405205, 23: 2405233, 34: 2405261, 44: 2405289, 55: 2405445, 66: 2405473, 77: 2405501, 87: 2405557, 89: 2405791, 98: 2406099, 1
[2025-06-03 11:43:20] 2025-06-03 08:49:47,654 | INFO     | --------------------------------------------------
[2025-06-03 11:43:20] 2025-06-03 08:49:47,655 | INFO     | 
[2025-06-03 11:43:20] 2025-06-03 08:49:47,655 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-03 11:43:20] 2025-06-03 08:49:47,979 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,981 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:43:20] 2025-06-03 08:49:47,982 | INFO     | job 6677381752 has completed (purged errors)
[2025-06-03 11:43:20] 2025-06-03 08:49:47,982 | INFO     | overall cleanup function is called
[2025-06-03 11:43:20] 2025-06-03 08:49:48,991 | INFO     | --- collectZombieJob: --- 10, [29948]
[2025-06-03 11:43:20] 2025-06-03 08:49:48,991 | INFO     | zombie collector waiting for pid 29948
[2025-06-03 11:43:20] 2025-06-03 08:49:48,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:43:20] 2025-06-03 08:49:48,992 | INFO     | collected zombie processes
[2025-06-03 11:43:20] 2025-06-03 08:49:48,992 | INFO     | will attempt to kill all subprocesses of pid=29948
[2025-06-03 11:43:20] 2025-06-03 08:49:49,125 | INFO     | process IDs to be killed: [29948] (in reverse order)
[2025-06-03 11:43:20] 2025-06-03 08:49:49,848 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:43:20] 2025-06-03 08:49:49,848 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:43:20] 2025-06-03 08:49:49,851 | INFO     | did not find any defunct processes belonging to 29948
[2025-06-03 11:43:20] 2025-06-03 08:49:49,855 | INFO     | did not find any defunct processes belonging to 29948
[2025-06-03 11:43:20] 2025-06-03 08:49:49,855 | INFO     | ready for new job
[2025-06-03 11:43:20] 2025-06-03 08:49:49,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:43:20] 2025-06-03 08:49:49,859 | INFO     | **************************************
[2025-06-03 11:43:20] 2025-06-03 08:49:49,859 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:43:20] 2025-06-03 08:49:49,859 | INFO     | **************************************
[2025-06-03 11:43:20] 2025-06-03 08:49:49,859 | INFO     | 
[2025-06-03 11:43:20] 2025-06-03 08:49:49,860 | INFO     | pilot is running in a VM
[2025-06-03 11:43:20] 2025-06-03 08:49:49,860 | INFO     | architecture information:
[2025-06-03 11:43:20] 2025-06-03 08:49:49,877 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:43:20] 2025-06-03 08:49:50,156 | INFO     | cat /etc/os-release:
[2025-06-03 11:43:20] NAME="CentOS Linux"
[2025-06-03 11:43:20] VERSION="7 (Core)"
[2025-06-03 11:43:20] ID="centos"
[2025-06-03 11:43:20] ID_LIKE="rhel fedora"
[2025-06-03 11:43:20] VERSION_ID="7"
[2025-06-03 11:43:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:43:20] ANSI_COLOR="0;31"
[2025-06-03 11:43:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:43:20] HOME_URL="https://www.centos.org/"
[2025-06-03 11:43:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:43:20] 
[2025-06-03 11:43:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:43:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:43:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:43:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:43:20] 
[2025-06-03 11:43:20] 2025-06-03 08:49:50,156 | INFO     | **************************************
[2025-06-03 11:43:20] 2025-06-03 08:49:50,660 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-03 11:43:20] 2025-06-03 08:49:50,931 | INFO     | sufficient remaining disk space (496748199936 B)
[2025-06-03 11:43:20] 2025-06-03 08:49:50,931 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:43:20] 2025-06-03 08:49:50,931 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:43:20] 2025-06-03 08:49:50,931 | INFO     | update_server=False
[2025-06-03 11:43:20] 2025-06-03 08:49:50,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:43:20] 2025-06-03 08:49:50,932 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:43:20] 2025-06-03 08:49:50,933 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:43:20] 2025-06-03 08:49:50,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:43:20] 2025-06-03 08:49:50,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:43:20] 2025-06-03 08:49:51,157 | INFO     | all payload control threads have been joined
[2025-06-03 11:43:20] 2025-06-03 08:49:51,161 | INFO     | all data control threads have been joined
[2025-06-03 11:43:20] 2025-06-03 08:49:51,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:43:20] 2025-06-03 08:49:51,417 | INFO     | aborting loop
[2025-06-03 11:43:20] 2025-06-03 08:49:51,841 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:43:20] 2025-06-03 08:49:51,937 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,163 | INFO     | [payload] control thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,167 | INFO     | [data] control thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,267 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,333 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,423 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,492 | INFO     | all job control threads have been joined
[2025-06-03 11:43:20] 2025-06-03 08:49:52,564 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,573 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:43:20] 2025-06-03 08:49:52,777 | INFO     | [job] validate thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,789 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,812 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:52,929 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:53,334 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:43:20] 2025-06-03 08:49:53,498 | INFO     | [job] control thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:53,682 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:53,848 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:57,343 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:43:20] 2025-06-03 08:49:57,499 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365754595136)>', '<ExcThread(monitor, started 140365092873984)>']
[2025-06-03 11:43:20] 2025-06-03 08:49:57,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:43:20] 2025-06-03 08:49:57,974 | INFO     | [monitor] control thread has ended
[2025-06-03 11:43:20] 2025-06-03 08:50:02,525 | INFO     | all workflow threads have been joined
[2025-06-03 11:43:20] 2025-06-03 08:50:02,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:43:20] 2025-06-03 08:50:02,526 | INFO     | traces error code: 0
[2025-06-03 11:43:20] 2025-06-03 08:50:02,526 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:43:20] 2025-06-03 08:50:02,871 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:43:20] 2025-06-03 08:50:02,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:43:20] 2025-06-03 08:50:02,985 [wrapper] pilotpid: 17414
[2025-06-03 11:43:20] 2025-06-03 08:50:03,054 [wrapper] Pilot exit status: 0
[2025-06-03 11:43:20] 2025-06-03 08:50:03,476 [wrapper] pandaids: 6677381752
[2025-06-03 11:43:20] 2025-06-03 08:50:03,583 [wrapper] cleanup supervisor_pilot  9609 17415
[2025-06-03 11:43:20] 2025-06-03 08:50:03,587 [wrapper] Test setup, not cleaning
[2025-06-03 11:43:20] 2025-06-03 08:50:03,597 [wrapper] apfmon messages muted
[2025-06-03 11:43:20] 2025-06-03 08:50:03,600 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:43:20] 2025-06-03 08:50:03,603 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:43:20]  *** Error codes and diagnostics ***
[2025-06-03 11:43:20]     "exeErrorCode": 0,
[2025-06-03 11:43:20]     "exeErrorDiag": "",
[2025-06-03 11:43:20]     "pilotErrorCode": 0,
[2025-06-03 11:43:20]     "pilotErrorDiag": "",
[2025-06-03 11:43:20]  *** Listing of results directory ***
[2025-06-03 11:43:20] total 392292
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 11:43:20] -rwx------. 1 boinc boinc     37140 Jun  2 17:57 runpilot2-wrapper.sh
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:57 queuedata.json
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:43:20] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:49 run_atlas
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:49 job.xml
[2025-06-03 11:43:20] -rw-r--r--. 2 boinc boinc 216676288 Jun  3 06:49 EVNT.45006593._000105.pool.root.1
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc      6392 Jun  3 06:49 init_data.xml
[2025-06-03 11:43:20] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:49 start_atlas.sh
[2025-06-03 11:43:20] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:49 shared
[2025-06-03 11:43:20] -rw-r--r--. 2 boinc boinc    508880 Jun  3 06:49 input.tar.gz
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:49 boinc_lockfile
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc      2521 Jun  3 06:58 pandaJob.out
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc    988073 Jun  3 07:02 agis_schedconf.cvmfs.json
[2025-06-03 11:43:20] drwx------. 4 boinc boinc      4096 Jun  3 07:02 pilot3
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc 178068250 Jun  3 10:46 HITS.45006595._002626.pool.root.1
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc       530 Jun  3 10:47 boinc_task_state.xml
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc      1016 Jun  3 10:48 memory_monitor_summary.json
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc   1603667 Jun  3 10:48 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc    394715 Jun  3 10:48 log.45006595._002626.job.log.tgz.1
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc        95 Jun  3 10:49 pilot_heartbeat.json
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc      7695 Jun  3 10:49 heartbeat.json
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc      4539 Jun  3 10:50 pilotlog.txt
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc   1173165 Jun  3 10:50 log.45006595._002626.job.log.1
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc       357 Jun  3 10:50 output.list
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc       620 Jun  3 10:50 runtime_log
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc   1587200 Jun  3 10:50 result.tar.gz
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc      8659 Jun  3 10:50 runtime_log.err
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc       656 Jun  3 10:50 HgFMDmkiMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzDfKDmNde3Im.diag
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:43 wrapper_checkpoint.txt
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:43 boinc_mmap_file
[2025-06-03 11:43:20] -rw-r--r--. 1 boinc boinc     20502 Jun  3 11:43 stderr.txt
[2025-06-03 11:43:20] HITS file was successfully produced:
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc 178068250 Jun  3 10:46 shared/HITS.pool.root.1
[2025-06-03 11:43:20]  *** Contents of shared directory: ***
[2025-06-03 11:43:20] total 387564
[2025-06-03 11:43:20] -rw-r--r--. 2 boinc boinc 216676288 Jun  3 06:49 ATLAS.root_0
[2025-06-03 11:43:20] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:49 start_atlas.sh
[2025-06-03 11:43:20] -rw-r--r--. 2 boinc boinc    508880 Jun  3 06:49 input.tar.gz
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc 178068250 Jun  3 10:46 HITS.pool.root.1
[2025-06-03 11:43:20] -rw-------. 1 boinc boinc   1587200 Jun  3 10:50 result.tar.gz
11:43:22 (6753): run_atlas exited; CPU time 49207.290063
11:43:22 (6753): called boinc_finish(0)

</stderr_txt>
]]>

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