Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:14:17 (1868263): wrapper (7.7.26015): starting
02:14:17 (1868263): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 02:14:17] Arguments: --nthreads 4
[2025-06-06 02:14:17] Threads: 4
[2025-06-06 02:14:17] Checking for CVMFS
[2025-06-06 02:14:17] No cvmfs_config command found, will try listing directly
[2025-06-06 02:14:17] CVMFS is ok
[2025-06-06 02:14:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 02:14:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 02:14:17] Further information can be found at the LHC@home message board.
[2025-06-06 02:14:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 02:14:17] Checking for apptainer binary...
[2025-06-06 02:14:17] which: no apptainer in ((null))
[2025-06-06 02:14:17] apptainer is not installed, using version from CVMFS
[2025-06-06 02:14:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 02:14:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-06-06 02:14:17] apptainer works
[2025-06-06 02:14:17] Set ATHENA_PROC_NUMBER=4
[2025-06-06 02:14:17] Set ATHENA_CORE_NUMBER=4
[2025-06-06 02:14:17] Starting ATLAS job with PandaID=6677380292
[2025-06-06 02:14:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 03:50:15]  *** The last 200 lines of the pilot log: ***
[2025-06-06 03:50:15]  lfn=log.45006595._002033.job.log.tgz.1
[2025-06-06 03:50:15]  mtime=0
[2025-06-06 03:50:15]  protocol_id=None
[2025-06-06 03:50:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 03:50:15]  replicas=None
[2025-06-06 03:50:15]  scope=mc23_13p6TeV
[2025-06-06 03:50:15]  status=None
[2025-06-06 03:50:15]  status_code=0
[2025-06-06 03:50:15]  storage_token=
[2025-06-06 03:50:15]  surl=/scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677380292/log.45006595._002033.job.log.tgz.1
[2025-06-06 03:50:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/d3/log.45006595._002033.job.log.tgz.1
[2025-06-06 03:50:15]  workdir=None
[2025-06-06 03:50:15] ]
[2025-06-06 03:50:15] 2025-06-06 01:49:29,574 | INFO     | transferring file log.45006595._002033.job.log.tgz.1 from /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677380292/log.45006595._002033.job.log.tgz.1 to /scratch/b
[2025-06-06 03:50:15] 2025-06-06 01:49:29,574 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677380292/log.45006595._002033.job.log.tgz.1 /scratch/boinc/var/slot72/slots/0/lo
[2025-06-06 03:50:15] 2025-06-06 01:49:29,594 | INFO     | adding to output.list: log.45006595._002033.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/d3/log.45006595._002033.job.log.tg
[2025-06-06 03:50:15] 2025-06-06 01:49:29,595 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 03:50:15] 2025-06-06 01:49:29,595 | INFO     | summary of transferred files:
[2025-06-06 03:50:15] 2025-06-06 01:49:29,595 | INFO     |  -- lfn=log.45006595._002033.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 03:50:15] 2025-06-06 01:49:29,595 | INFO     | stage-out finished correctly
[2025-06-06 03:50:15] 2025-06-06 01:49:29,860 | WARNING  | process 1879737 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 03:50:15] 2025-06-06 01:49:29,860 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677380292/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 03:50:15] 2025-06-06 01:49:30,219 | INFO     | number of running child processes to parent process 1879737: 1
[2025-06-06 03:50:15] 2025-06-06 01:49:30,219 | INFO     | maximum number of monitored processes: 6
[2025-06-06 03:50:15] 2025-06-06 01:49:31,881 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 03:50:15] 2025-06-06 01:49:31,957 | INFO     | job 6677380292 has state=finished
[2025-06-06 03:50:15] 2025-06-06 01:49:31,957 | INFO     | preparing for final server update for job 6677380292 in state='finished'
[2025-06-06 03:50:15] 2025-06-06 01:49:31,958 | INFO     | this job has now completed (state=finished)
[2025-06-06 03:50:15] 2025-06-06 01:49:31,958 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 03:50:15] 2025-06-06 01:49:31,958 | INFO     | log transfer has been attempted: DONE
[2025-06-06 03:50:15] 2025-06-06 01:49:31,958 | INFO     | job 6677380292 has finished - writing final server update
[2025-06-06 03:50:15] 2025-06-06 01:49:31,958 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1450173/.job.ad'
[2025-06-06 03:50:15] 2025-06-06 01:49:31,959 | INFO     | total number of processed events: 400 (read)
[2025-06-06 03:50:15] 2025-06-06 01:49:31,966 | INFO     | executing command: lscpu
[2025-06-06 03:50:15] 2025-06-06 01:49:32,049 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 03:50:15] 2025-06-06 01:49:32,722 | INFO     | monitor loop #408: job 0:6677380292 is in state 'finished'
[2025-06-06 03:50:15] 2025-06-06 01:49:32,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 03:50:15] 2025-06-06 01:49:35,225 | INFO     | monitor loop #409: job 0:6677380292 is in state 'finished'
[2025-06-06 03:50:15] 2025-06-06 01:49:35,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 03:50:15] 2025-06-06 01:49:36,205 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 03:50:15] 2025-06-06 01:49:36,205 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677380292/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 03:50:15] 2025-06-06 01:49:36,206 | INFO     | extracted standard info from prmon json
[2025-06-06 03:50:15] 2025-06-06 01:49:36,206 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 03:50:15] 2025-06-06 01:49:36,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 03:50:15] 2025-06-06 01:49:36,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 03:50:15] 2025-06-06 01:49:36,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 03:50:15] 2025-06-06 01:49:36,208 | INFO     | fitting pss+swap vs Time
[2025-06-06 03:50:15] 2025-06-06 01:49:36,208 | INFO     | sum of square deviations: 197203697.5
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | sum of deviations: -16731709794.500004
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | mean x: 1749171796.5
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | mean y: 2570744.7790697673
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | -- intersect: 148410715474.22675
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | intersect: 148410715474.22675
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | chi2: 0.12454791126404127
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | -- intersect: 148410715474.22675
[2025-06-06 03:50:15] 2025-06-06 01:49:36,209 | INFO     | current memory leak: -84.84 B/s (using 86 data points, chi2=0.12)
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | ..............................
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . Timing measurements:
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . get job = 0 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . initial setup = 1 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . payload setup = 8 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . stage-in = 0 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . payload execution = 5674 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . stage-out = 0 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | . log creation = 0 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,210 | INFO     | ..............................
[2025-06-06 03:50:15] 2025-06-06 01:49:36,295 | INFO     | 
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | job summary report
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | --------------------------------------------------
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | PanDA job id: 6677380292
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | task id: 45006595
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | errors: (none)
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | pilot state: finished 
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | transexitcode: 0
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | exeerrorcode: 0
[2025-06-06 03:50:15] 2025-06-06 01:49:36,296 | INFO     | exeerrordiag: 
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | exitcode: 0
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | exitmsg: OK
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | cpuconsumptiontime: 21611 s
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | nevents: 400
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | neventsw: 0
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | pid: 1879737
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | pgrp: 1879737
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | corecount: 4
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | event service: False
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | sizes: {0: 2397345, 6: 2397551, 11: 2397579, 5684: 2423969, 5685: 2432932, 5687: 2432988, 5692: 2433286}
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | --------------------------------------------------
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | 
[2025-06-06 03:50:15] 2025-06-06 01:49:36,297 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/0
[2025-06-06 03:50:15] 2025-06-06 01:49:36,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | job 6677380292 has completed (purged errors)
[2025-06-06 03:50:15] 2025-06-06 01:49:36,320 | INFO     | overall cleanup function is called
[2025-06-06 03:50:15] 2025-06-06 01:49:37,328 | INFO     | --- collectZombieJob: --- 10, [1879737]
[2025-06-06 03:50:15] 2025-06-06 01:49:37,329 | INFO     | zombie collector waiting for pid 1879737
[2025-06-06 03:50:15] 2025-06-06 01:49:37,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 03:50:15] 2025-06-06 01:49:37,329 | INFO     | collected zombie processes
[2025-06-06 03:50:15] 2025-06-06 01:49:37,329 | INFO     | will attempt to kill all subprocesses of pid=1879737
[2025-06-06 03:50:15] 2025-06-06 01:49:37,717 | INFO     | process IDs to be killed: [1879737] (in reverse order)
[2025-06-06 03:50:15] 2025-06-06 01:49:37,882 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 03:50:15] 2025-06-06 01:49:37,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 03:50:15] 2025-06-06 01:49:37,900 | INFO     | did not find any defunct processes belonging to 1879737
[2025-06-06 03:50:15] 2025-06-06 01:49:37,915 | INFO     | did not find any defunct processes belonging to 1879737
[2025-06-06 03:50:15] 2025-06-06 01:49:37,916 | INFO     | ready for new job
[2025-06-06 03:50:15] 2025-06-06 01:49:37,916 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 03:50:15] 2025-06-06 01:49:37,917 | INFO     | **************************************
[2025-06-06 03:50:15] 2025-06-06 01:49:37,917 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 03:50:15] 2025-06-06 01:49:37,917 | INFO     | **************************************
[2025-06-06 03:50:15] 2025-06-06 01:49:37,917 | INFO     | 
[2025-06-06 03:50:15] 2025-06-06 01:49:37,923 | INFO     | architecture information:
[2025-06-06 03:50:15] 2025-06-06 01:49:37,923 | INFO     | executing command: cat /etc/os-release
[2025-06-06 03:50:15] 2025-06-06 01:49:37,945 | INFO     | cat /etc/os-release:
[2025-06-06 03:50:15] NAME="CentOS Linux"
[2025-06-06 03:50:15] VERSION="7 (Core)"
[2025-06-06 03:50:15] ID="centos"
[2025-06-06 03:50:15] ID_LIKE="rhel fedora"
[2025-06-06 03:50:15] VERSION_ID="7"
[2025-06-06 03:50:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 03:50:15] ANSI_COLOR="0;31"
[2025-06-06 03:50:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 03:50:15] HOME_URL="https://www.centos.org/"
[2025-06-06 03:50:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 03:50:15] 
[2025-06-06 03:50:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 03:50:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 03:50:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 03:50:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 03:50:15] 
[2025-06-06 03:50:15] 2025-06-06 01:49:37,945 | INFO     | **************************************
[2025-06-06 03:50:15] 2025-06-06 01:49:38,447 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/0
[2025-06-06 03:50:15] 2025-06-06 01:49:38,464 | INFO     | sufficient remaining disk space (3256561434624 B)
[2025-06-06 03:50:15] 2025-06-06 01:49:38,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 03:50:15] 2025-06-06 01:49:38,465 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 03:50:15] 2025-06-06 01:49:38,465 | INFO     | update_server=False
[2025-06-06 03:50:15] 2025-06-06 01:49:38,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 03:50:15] 2025-06-06 01:49:38,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 03:50:15] 2025-06-06 01:49:38,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 03:50:15] 2025-06-06 01:49:38,467 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 03:50:15] 2025-06-06 01:49:38,467 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 03:50:15] 2025-06-06 01:49:38,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 03:50:15] 2025-06-06 01:49:38,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 03:50:15] 2025-06-06 01:49:38,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 03:50:15] 2025-06-06 01:49:38,739 | INFO     | aborting loop
[2025-06-06 03:50:15] 2025-06-06 01:49:38,808 | INFO     | all job control threads have been joined
[2025-06-06 03:50:15] 2025-06-06 01:49:39,331 | INFO     | all data control threads have been joined
[2025-06-06 03:50:15] 2025-06-06 01:49:39,409 | INFO     | all payload control threads have been joined
[2025-06-06 03:50:15] 2025-06-06 01:49:39,470 | INFO     | [job] retrieve thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:39,741 | INFO     | [job] job monitor thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:39,813 | INFO     | [job] control thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:39,927 | INFO     | [payload] failed_post thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:39,960 | INFO     | [data] copytool_in thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,058 | INFO     | [job] validate thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,174 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,315 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,336 | INFO     | [data] control thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,414 | INFO     | [payload] control thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,470 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,471 | INFO     | [data] copytool_out thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:40,976 | INFO     | [payload] validate_post thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:41,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 03:50:15] 2025-06-06 01:49:42,312 | INFO     | [job] queue monitor thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:42,472 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:49,208 | INFO     | job.realtimelogging is not enabled
[2025-06-06 03:50:15] 2025-06-06 01:49:50,214 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 03:50:15] 2025-06-06 01:49:50,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23223325370176)>', '<ExcThread(monitor, started 23222737139456)>']
[2025-06-06 03:50:15] 2025-06-06 01:49:51,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 03:50:15] 2025-06-06 01:49:51,535 | INFO     | [monitor] control thread has ended
[2025-06-06 03:50:15] 2025-06-06 01:49:55,678 | INFO     | all workflow threads have been joined
[2025-06-06 03:50:15] 2025-06-06 01:49:55,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 03:50:15] 2025-06-06 01:49:55,679 | INFO     | traces error code: 0
[2025-06-06 03:50:15] 2025-06-06 01:49:55,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 03:50:15] 2025-06-06 01:49:55,832 [wrapper] ==== pilot stdout END ====
[2025-06-06 03:50:15] 2025-06-06 01:49:55,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 03:50:15] 2025-06-06 01:49:55,840 [wrapper] pilotpid: 1872264
[2025-06-06 03:50:15] 2025-06-06 01:49:55,843 [wrapper] Pilot exit status: 0
[2025-06-06 03:50:15] 2025-06-06 01:49:55,856 [wrapper] pandaids: 6677380292
[2025-06-06 03:50:15] 2025-06-06 01:49:55,978 [wrapper] cleanup supervisor_pilot 2074023 1872265
[2025-06-06 03:50:15] 2025-06-06 01:49:55,982 [wrapper] Test setup, not cleaning
[2025-06-06 03:50:15] 2025-06-06 01:49:55,986 [wrapper] apfmon messages muted
[2025-06-06 03:50:15] 2025-06-06 01:49:55,990 [wrapper] ==== wrapper stdout END ====
[2025-06-06 03:50:15] 2025-06-06 01:49:55,994 [wrapper] ==== wrapper stderr END ====
[2025-06-06 03:50:15]  *** Error codes and diagnostics ***
[2025-06-06 03:50:15]     "exeErrorCode": 0,
[2025-06-06 03:50:15]     "exeErrorDiag": "",
[2025-06-06 03:50:15]     "pilotErrorCode": 0,
[2025-06-06 03:50:15]     "pilotErrorDiag": "",
[2025-06-06 03:50:15]  *** Listing of results directory ***
[2025-06-06 03:50:15] total 390700
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-06 03:50:15] -rwx------ 1 boinc boinc     37140 Jun  2 17:51 runpilot2-wrapper.sh
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc      5111 Jun  2 17:53 queuedata.json
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc       100 Jun  6 02:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 03:50:15] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 02:14 run_atlas
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc       105 Jun  6 02:14 job.xml
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc      6683 Jun  6 02:14 init_data.xml
[2025-06-06 03:50:15] -rw-r--r-- 2 boinc boinc 214809569 Jun  6 02:14 EVNT.45006593._000082.pool.root.1
[2025-06-06 03:50:15] -rw-r--r-- 2 boinc boinc     15093 Jun  6 02:14 start_atlas.sh
[2025-06-06 03:50:15] drwxrwx--x 2 boinc boinc      4096 Jun  6 02:14 shared
[2025-06-06 03:50:15] -rw-r--r-- 2 boinc boinc    508877 Jun  6 02:14 input.tar.gz
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc         0 Jun  6 02:14 boinc_lockfile
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc      2521 Jun  6 02:14 pandaJob.out
[2025-06-06 03:50:15] -rw------- 1 boinc boinc    987721 Jun  6 02:14 agis_schedconf.cvmfs.json
[2025-06-06 03:50:15] -rw------- 1 boinc boinc   1598969 Jun  6 02:14 agis_ddmendpoints.agis.ALL.json
[2025-06-06 03:50:15] drwx------ 4 boinc boinc      4096 Jun  6 02:14 pilot3
[2025-06-06 03:50:15] -rw------- 1 boinc boinc        95 Jun  6 03:48 pilot_heartbeat.json
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc       528 Jun  6 03:49 boinc_task_state.xml
[2025-06-06 03:50:15] -rw------- 1 boinc boinc 179853197 Jun  6 03:49 HITS.45006595._002033.pool.root.1
[2025-06-06 03:50:15] -rw------- 1 boinc boinc      1026 Jun  6 03:49 memory_monitor_summary.json
[2025-06-06 03:50:15] -rw------- 1 boinc boinc    245489 Jun  6 03:49 log.45006595._002033.job.log.tgz.1
[2025-06-06 03:50:15] -rw------- 1 boinc boinc      7699 Jun  6 03:49 heartbeat.json
[2025-06-06 03:50:15] -rw------- 1 boinc boinc      4559 Jun  6 03:49 pilotlog.txt
[2025-06-06 03:50:15] -rw------- 1 boinc boinc    544081 Jun  6 03:49 log.45006595._002033.job.log.1
[2025-06-06 03:50:15] -rw------- 1 boinc boinc       357 Jun  6 03:49 output.list
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc       620 Jun  6 03:49 runtime_log
[2025-06-06 03:50:15] -rw------- 1 boinc boinc    808960 Jun  6 03:49 result.tar.gz
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc      9025 Jun  6 03:49 runtime_log.err
[2025-06-06 03:50:15] -rw------- 1 boinc boinc       662 Jun  6 03:49 nXQMDmscMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlAfKDmUM0BZm.diag
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc        26 Jun  6 03:50 wrapper_checkpoint.txt
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc      8192 Jun  6 03:50 boinc_mmap_file
[2025-06-06 03:50:15] -rw-r--r-- 1 boinc boinc     21463 Jun  6 03:50 stderr.txt
[2025-06-06 03:50:15] HITS file was successfully produced:
[2025-06-06 03:50:15] -rw------- 1 boinc boinc 179853197 Jun  6 03:49 shared/HITS.pool.root.1
[2025-06-06 03:50:15]  *** Contents of shared directory: ***
[2025-06-06 03:50:15] total 386732
[2025-06-06 03:50:15] -rw-r--r-- 2 boinc boinc 214809569 Jun  6 02:14 ATLAS.root_0
[2025-06-06 03:50:15] -rw-r--r-- 2 boinc boinc     15093 Jun  6 02:14 start_atlas.sh
[2025-06-06 03:50:15] -rw-r--r-- 2 boinc boinc    508877 Jun  6 02:14 input.tar.gz
[2025-06-06 03:50:15] -rw------- 1 boinc boinc 179853197 Jun  6 03:49 HITS.pool.root.1
[2025-06-06 03:50:15] -rw------- 1 boinc boinc    808960 Jun  6 03:49 result.tar.gz
03:50:16 (1868263): run_atlas exited; CPU time 21863.405323
03:50:16 (1868263): called boinc_finish(0)

</stderr_txt>
]]>

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