Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:22:52 (3698102): wrapper (7.7.26015): starting
09:22:52 (3698102): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 09:22:52] Arguments: --nthreads 4
[2025-06-04 09:22:52] Threads: 4
[2025-06-04 09:22:52] Checking for CVMFS
[2025-06-04 09:22:52] No cvmfs_config command found, will try listing directly
[2025-06-04 09:22:52] CVMFS is ok
[2025-06-04 09:22:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:22:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:22:52] Further information can be found at the LHC@home message board.
[2025-06-04 09:22:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:22:52] Checking for apptainer binary...
[2025-06-04 09:22:52] which: no apptainer in ((null))
[2025-06-04 09:22:52] apptainer is not installed, using version from CVMFS
[2025-06-04 09:22:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:22:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-04 09:22:52] apptainer works
[2025-06-04 09:22:52] Set ATHENA_PROC_NUMBER=4
[2025-06-04 09:22:52] Set ATHENA_CORE_NUMBER=4
[2025-06-04 09:22:52] Starting ATLAS job with PandaID=6677380792
[2025-06-04 09:22:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:59:53]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:59:53] 2025-06-04 09:56:36,061 | INFO     | executing command: lscpu
[2025-06-04 11:59:53] 2025-06-04 09:56:36,123 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:59:53] 2025-06-04 09:56:36,754 | INFO     | monitor loop #673: job 0:6677380792 is in state 'finished'
[2025-06-04 11:59:53] 2025-06-04 09:56:36,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:59:53] 2025-06-04 09:56:39,258 | INFO     | monitor loop #674: job 0:6677380792 is in state 'finished'
[2025-06-04 11:59:53] 2025-06-04 09:56:39,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:59:53] 2025-06-04 09:56:39,670 | INFO     | 9219s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 11:59:53] 2025-06-04 09:56:40,446 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:59:53] 2025-06-04 09:56:40,447 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6677380792/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,448 | INFO     | extracted standard info from prmon json
[2025-06-04 11:59:53] 2025-06-04 09:56:40,448 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:59:53] 2025-06-04 09:56:40,448 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:59:53] 2025-06-04 09:56:40,448 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:59:53] 2025-06-04 09:56:40,448 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:59:53] 2025-06-04 09:56:40,452 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:59:53] 2025-06-04 09:56:40,452 | INFO     | sum of square deviations: 1067554900.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,453 | INFO     | sum of deviations: -4766473387.999997
[2025-06-04 11:59:53] 2025-06-04 09:56:40,453 | INFO     | mean x: 1749026385.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,454 | INFO     | mean y: 2368976.9006622517
[2025-06-04 11:59:53] 2025-06-04 09:56:40,454 | INFO     | -- intersect: 7811510894.578467
[2025-06-04 11:59:53] 2025-06-04 09:56:40,454 | INFO     | intersect: 7811510894.578467
[2025-06-04 11:59:53] 2025-06-04 09:56:40,454 | INFO     | chi2: 1.6621446936185513
[2025-06-04 11:59:53] 2025-06-04 09:56:40,454 | INFO     | sum of square deviations: 964976232.5
[2025-06-04 11:59:53] 2025-06-04 09:56:40,455 | INFO     | sum of deviations: -4030228855.5000043
[2025-06-04 11:59:53] 2025-06-04 09:56:40,455 | INFO     | mean x: 1749026232.5
[2025-06-04 11:59:53] 2025-06-04 09:56:40,456 | INFO     | mean y: 2370073.7465753425
[2025-06-04 11:59:53] 2025-06-04 09:56:40,456 | INFO     | -- intersect: 7307188320.913051
[2025-06-04 11:59:53] 2025-06-04 09:56:40,456 | INFO     | intersect: 7307188320.913051
[2025-06-04 11:59:53] 2025-06-04 09:56:40,456 | INFO     | chi2: 1.6630661268093008
[2025-06-04 11:59:53] 2025-06-04 09:56:40,456 | INFO     | current chi2=1.6630661268093008 (change=-0.05543640059057967 %)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,456 | INFO     | right removable region: 145
[2025-06-04 11:59:53] 2025-06-04 09:56:40,457 | INFO     | sum of square deviations: 964976232.5
[2025-06-04 11:59:53] 2025-06-04 09:56:40,457 | INFO     | sum of deviations: -27285331567.499985
[2025-06-04 11:59:53] 2025-06-04 09:56:40,458 | INFO     | mean x: 1749026537.5
[2025-06-04 11:59:53] 2025-06-04 09:56:40,458 | INFO     | mean y: 2401945.5821917807
[2025-06-04 11:59:53] 2025-06-04 09:56:40,458 | INFO     | -- intersect: 49457266623.862175
[2025-06-04 11:59:53] 2025-06-04 09:56:40,458 | INFO     | intersect: 49457266623.862175
[2025-06-04 11:59:53] 2025-06-04 09:56:40,458 | INFO     | chi2: 0.0755565940615368
[2025-06-04 11:59:53] 2025-06-04 09:56:40,458 | INFO     | current chi2=0.0755565940615368 (change=95.45427095778003 %)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,459 | INFO     | sum of square deviations: 869188390.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,459 | INFO     | sum of deviations: -25371629838.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,460 | INFO     | mean x: 1749026690.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,460 | INFO     | mean y: 2398890.276595745
[2025-06-04 11:59:53] 2025-06-04 09:56:40,460 | INFO     | -- intersect: 51056529693.22298
[2025-06-04 11:59:53] 2025-06-04 09:56:40,460 | INFO     | intersect: 51056529693.22298
[2025-06-04 11:59:53] 2025-06-04 09:56:40,460 | INFO     | chi2: 0.07433771268667777
[2025-06-04 11:59:53] 2025-06-04 09:56:40,460 | INFO     | current chi2=0.07433771268667777 (change=1.6132031757099985 %)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,460 | INFO     | left removable region: 20
[2025-06-04 11:59:53] 2025-06-04 09:56:40,461 | INFO     | sum of square deviations: 605592750.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,461 | INFO     | sum of deviations: -19310378502.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,461 | INFO     | mean x: 1749026812.0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,461 | INFO     | mean y: 2392987.232
[2025-06-04 11:59:53] 2025-06-04 09:56:40,462 | INFO     | -- intersect: 55773156012.16319
[2025-06-04 11:59:53] 2025-06-04 09:56:40,462 | INFO     | intersect: 55773156012.16319
[2025-06-04 11:59:53] 2025-06-04 09:56:40,462 | INFO     | chi2: 0.06980820464204184
[2025-06-04 11:59:53] 2025-06-04 09:56:40,462 | INFO     | -- intersect: 55773156012.16319
[2025-06-04 11:59:53] 2025-06-04 09:56:40,462 | INFO     | current memory leak: -31.89 B/s (using 125 data points, chi2=0.07)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | ..............................
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | . Timing measurements:
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | . get job = 0 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | . initial setup = 1 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | . payload setup = 7 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | . stage-in = 0 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | . payload execution = 9184 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,463 | INFO     | . stage-out = 0 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,464 | INFO     | . log creation = 0 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,464 | INFO     | ..............................
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | 
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | job summary report
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | --------------------------------------------------
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | PanDA job id: 6677380792
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | task id: 45006595
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | errors: (none)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:59:53] 2025-06-04 09:56:40,569 | INFO     | pilot state: finished 
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | transexitcode: 0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | exeerrorcode: 0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | exeerrordiag: 
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | exitcode: 0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | exitmsg: OK
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | cpuconsumptiontime: 35309 s
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | nevents: 400
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | neventsw: 0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | pid: 3708874
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | pgrp: 3708874
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | corecount: 4
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | event service: False
[2025-06-04 11:59:53] 2025-06-04 09:56:40,570 | INFO     | sizes: {0: 2404348, 1: 2405215, 6: 2405421, 12: 2405449, 9195: 2433510, 9196: 2442473, 9198: 2442657, 9203: 2442827}
[2025-06-04 11:59:53] 2025-06-04 09:56:40,571 | INFO     | --------------------------------------------------
[2025-06-04 11:59:53] 2025-06-04 09:56:40,571 | INFO     | 
[2025-06-04 11:59:53] 2025-06-04 09:56:40,571 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-06-04 11:59:53] 2025-06-04 09:56:40,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,591 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,593 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,593 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:59:53] 2025-06-04 09:56:40,593 | INFO     | job 6677380792 has completed (purged errors)
[2025-06-04 11:59:53] 2025-06-04 09:56:40,593 | INFO     | overall cleanup function is called
[2025-06-04 11:59:53] 2025-06-04 09:56:41,602 | INFO     | --- collectZombieJob: --- 10, [3708874]
[2025-06-04 11:59:53] 2025-06-04 09:56:41,602 | INFO     | zombie collector waiting for pid 3708874
[2025-06-04 11:59:53] 2025-06-04 09:56:41,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:59:53] 2025-06-04 09:56:41,602 | INFO     | collected zombie processes
[2025-06-04 11:59:53] 2025-06-04 09:56:41,602 | INFO     | will attempt to kill all subprocesses of pid=3708874
[2025-06-04 11:59:53] 2025-06-04 09:56:41,948 | INFO     | process IDs to be killed: [3708874] (in reverse order)
[2025-06-04 11:59:53] 2025-06-04 09:56:42,057 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:59:53] 2025-06-04 09:56:42,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:59:53] 2025-06-04 09:56:42,070 | INFO     | did not find any defunct processes belonging to 3708874
[2025-06-04 11:59:53] 2025-06-04 09:56:42,082 | INFO     | did not find any defunct processes belonging to 3708874
[2025-06-04 11:59:53] 2025-06-04 09:56:42,082 | INFO     | ready for new job
[2025-06-04 11:59:53] 2025-06-04 09:56:42,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:59:53] 2025-06-04 09:56:42,084 | INFO     | **************************************
[2025-06-04 11:59:53] 2025-06-04 09:56:42,085 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:59:53] 2025-06-04 09:56:42,085 | INFO     | **************************************
[2025-06-04 11:59:53] 2025-06-04 09:56:42,085 | INFO     | 
[2025-06-04 11:59:53] 2025-06-04 09:56:42,089 | INFO     | architecture information:
[2025-06-04 11:59:53] 2025-06-04 09:56:42,090 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:59:53] 2025-06-04 09:56:42,106 | INFO     | cat /etc/os-release:
[2025-06-04 11:59:53] NAME="CentOS Linux"
[2025-06-04 11:59:53] VERSION="7 (Core)"
[2025-06-04 11:59:53] ID="centos"
[2025-06-04 11:59:53] ID_LIKE="rhel fedora"
[2025-06-04 11:59:53] VERSION_ID="7"
[2025-06-04 11:59:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:59:53] ANSI_COLOR="0;31"
[2025-06-04 11:59:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:59:53] HOME_URL="https://www.centos.org/"
[2025-06-04 11:59:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:59:53] 
[2025-06-04 11:59:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:59:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:59:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:59:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:59:53] 
[2025-06-04 11:59:53] 2025-06-04 09:56:42,106 | INFO     | **************************************
[2025-06-04 11:59:53] 2025-06-04 09:56:42,607 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-06-04 11:59:53] 2025-06-04 09:56:42,623 | INFO     | sufficient remaining disk space (648615559168 B)
[2025-06-04 11:59:53] 2025-06-04 09:56:42,624 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:59:53] 2025-06-04 09:56:42,624 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:59:53] 2025-06-04 09:56:42,624 | INFO     | update_server=False
[2025-06-04 11:59:53] 2025-06-04 09:56:42,624 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:59:53] 2025-06-04 09:56:42,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:59:53] 2025-06-04 09:56:42,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:59:53] 2025-06-04 09:56:42,680 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:59:53] 2025-06-04 09:56:42,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:59:53] 2025-06-04 09:56:42,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:59:53] 2025-06-04 09:56:42,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:59:53] 2025-06-04 09:56:42,761 | INFO     | aborting loop
[2025-06-04 11:59:53] 2025-06-04 09:56:43,063 | INFO     | all data control threads have been joined
[2025-06-04 11:59:53] 2025-06-04 09:56:43,370 | INFO     | all payload control threads have been joined
[2025-06-04 11:59:53] 2025-06-04 09:56:43,418 | INFO     | all job control threads have been joined
[2025-06-04 11:59:53] 2025-06-04 09:56:43,630 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:43,749 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:43,767 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:43,787 | INFO     | [job] validate thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,068 | INFO     | [data] control thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,120 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,238 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,375 | INFO     | [payload] control thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,400 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,420 | INFO     | [job] control thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,489 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:44,631 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:45,044 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:45,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:59:53] 2025-06-04 09:56:46,585 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:46,629 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:53,364 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:59:53] 2025-06-04 09:56:54,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:59:53] 2025-06-04 09:56:56,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23002580690752)>', '<ExcThread(monitor, started 23002339043072)>']
[2025-06-04 11:59:53] 2025-06-04 09:56:56,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:59:53] 2025-06-04 09:56:56,748 | INFO     | [monitor] control thread has ended
[2025-06-04 11:59:53] 2025-06-04 09:57:01,473 | INFO     | all workflow threads have been joined
[2025-06-04 11:59:53] 2025-06-04 09:57:01,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:59:53] 2025-06-04 09:57:01,474 | INFO     | traces error code: 0
[2025-06-04 11:59:53] 2025-06-04 09:57:01,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:59:53] 2025-06-04 09:57:01,621 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:59:53] 2025-06-04 09:57:01,624 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:59:53] 2025-06-04 09:57:01,626 [wrapper] pilotpid: 3701819
[2025-06-04 11:59:53] 2025-06-04 09:57:01,629 [wrapper] Pilot exit status: 0
[2025-06-04 11:59:53] 2025-06-04 09:57:01,639 [wrapper] pandaids: 6677380792
[2025-06-04 11:59:53] 2025-06-04 09:57:01,711 [wrapper] cleanup supervisor_pilot 3963346 3701820
[2025-06-04 11:59:53] 2025-06-04 09:57:01,714 [wrapper] Test setup, not cleaning
[2025-06-04 11:59:53] 2025-06-04 09:57:01,717 [wrapper] apfmon messages muted
[2025-06-04 11:59:53] 2025-06-04 09:57:01,719 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:59:53] 2025-06-04 09:57:01,722 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:59:53]  *** Error codes and diagnostics ***
[2025-06-04 11:59:53]     "exeErrorCode": 0,
[2025-06-04 11:59:53]     "exeErrorDiag": "",
[2025-06-04 11:59:53]     "pilotErrorCode": 0,
[2025-06-04 11:59:53]     "pilotErrorDiag": "",
[2025-06-04 11:59:53]  *** Listing of results directory ***
[2025-06-04 11:59:53] total 387652
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-04 11:59:53] -rwx------ 1 boinc boinc     37140 Jun  2 17:51 runpilot2-wrapper.sh
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc      5111 Jun  2 17:53 queuedata.json
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc       100 Jun  4 09:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:59:53] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 09:22 run_atlas
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc       105 Jun  4 09:22 job.xml
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc      6635 Jun  4 09:22 init_data.xml
[2025-06-04 11:59:53] -rw-r--r-- 2 boinc boinc 214464929 Jun  4 09:22 EVNT.45006593._000097.pool.root.1
[2025-06-04 11:59:53] -rw-r--r-- 2 boinc boinc     15093 Jun  4 09:22 start_atlas.sh
[2025-06-04 11:59:53] drwxrwx--x 2 boinc boinc      4096 Jun  4 09:22 shared
[2025-06-04 11:59:53] -rw-r--r-- 2 boinc boinc    508875 Jun  4 09:22 input.tar.gz
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc         0 Jun  4 09:22 boinc_lockfile
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc      2521 Jun  4 09:22 pandaJob.out
[2025-06-04 11:59:53] -rw------- 1 boinc boinc    986745 Jun  4 09:23 agis_schedconf.cvmfs.json
[2025-06-04 11:59:53] -rw------- 1 boinc boinc   1603667 Jun  4 09:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:59:53] drwx------ 4 boinc boinc      4096 Jun  4 09:23 pilot3
[2025-06-04 11:59:53] -rw------- 1 boinc boinc 176296630 Jun  4 11:55 HITS.45006595._002424.pool.root.1
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc       528 Jun  4 11:56 boinc_task_state.xml
[2025-06-04 11:59:53] -rw------- 1 boinc boinc        95 Jun  4 11:56 pilot_heartbeat.json
[2025-06-04 11:59:53] -rw------- 1 boinc boinc      1034 Jun  4 11:56 memory_monitor_summary.json
[2025-06-04 11:59:53] -rw------- 1 boinc boinc    299459 Jun  4 11:56 log.45006595._002424.job.log.tgz.1
[2025-06-04 11:59:53] -rw------- 1 boinc boinc      7723 Jun  4 11:56 heartbeat.json
[2025-06-04 11:59:53] -rw------- 1 boinc boinc      4435 Jun  4 11:57 pilotlog.txt
[2025-06-04 11:59:53] -rw------- 1 boinc boinc    875797 Jun  4 11:57 log.45006595._002424.job.log.1
[2025-06-04 11:59:53] -rw------- 1 boinc boinc       357 Jun  4 11:57 output.list
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc       620 Jun  4 11:57 runtime_log
[2025-06-04 11:59:53] -rw------- 1 boinc boinc   1198080 Jun  4 11:57 result.tar.gz
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc      9025 Jun  4 11:57 runtime_log.err
[2025-06-04 11:59:53] -rw------- 1 boinc boinc       662 Jun  4 11:57 OEWNDmCdMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRhVKDmyhdiRn.diag
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc        26 Jun  4 11:59 wrapper_checkpoint.txt
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc      8192 Jun  4 11:59 boinc_mmap_file
[2025-06-04 11:59:53] -rw-r--r-- 1 boinc boinc     20902 Jun  4 11:59 stderr.txt
[2025-06-04 11:59:54] HITS file was successfully produced:
[2025-06-04 11:59:54] -rw------- 1 boinc boinc 176296630 Jun  4 11:55 shared/HITS.pool.root.1
[2025-06-04 11:59:54]  *** Contents of shared directory: ***
[2025-06-04 11:59:54] total 383304
[2025-06-04 11:59:54] -rw-r--r-- 2 boinc boinc 214464929 Jun  4 09:22 ATLAS.root_0
[2025-06-04 11:59:54] -rw-r--r-- 2 boinc boinc     15093 Jun  4 09:22 start_atlas.sh
[2025-06-04 11:59:54] -rw-r--r-- 2 boinc boinc    508875 Jun  4 09:22 input.tar.gz
[2025-06-04 11:59:54] -rw------- 1 boinc boinc 176296630 Jun  4 11:55 HITS.pool.root.1
[2025-06-04 11:59:54] -rw------- 1 boinc boinc   1198080 Jun  4 11:57 result.tar.gz
11:59:55 (3698102): run_atlas exited; CPU time 35650.224977
11:59:55 (3698102): called boinc_finish(0)

</stderr_txt>
]]>

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