Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:36:49 (26940): wrapper (7.7.26015): starting
18:36:49 (26940): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 18:36:49] Arguments: --nthreads 8
[2025-06-02 18:36:49] Threads: 8
[2025-06-02 18:36:49] Checking for CVMFS
[2025-06-02 18:36:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 18:36:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 18:36:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 18:36:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 18:36:54] 2.11.2.0 555 30689 100200 146713 2 10 23572519 25165824 4632 130560 0 16041997 99.813 19102116 2690 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 18:36:54] CVMFS is ok
[2025-06-02 18:36:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 18:36:54] Checking for apptainer binary...
[2025-06-02 18:36:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 18:36:54] Running /usr/bin/apptainer --version
[2025-06-02 18:36:54] apptainer version 1.3.2-1.el7
[2025-06-02 18:36:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:46:53] cg-vwn340.simple-grid.lan
[2025-06-02 18:46:53] apptainer works
[2025-06-02 18:46:53] Set ATHENA_PROC_NUMBER=8
[2025-06-02 18:46:53] Set ATHENA_CORE_NUMBER=8
[2025-06-02 18:46:53] Starting ATLAS job with PandaID=6677380565
[2025-06-02 18:46:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:41:44]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:41:44] 2025-06-02 20:34:56,134 | INFO     | extracted standard info from prmon json
[2025-06-02 22:41:44] 2025-06-02 20:34:56,134 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 22:41:44] 2025-06-02 20:34:56,135 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:41:44] 2025-06-02 20:34:56,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:41:44] 2025-06-02 20:34:56,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:41:44] 2025-06-02 20:34:56,139 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:41:44] 2025-06-02 20:34:56,140 | INFO     | sum of square deviations: 2912836010.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,142 | INFO     | sum of deviations: 86946543065.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,142 | INFO     | mean x: 1748889934.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,142 | INFO     | mean y: 2410679.9289099528
[2025-06-02 22:41:44] 2025-06-02 20:34:56,142 | INFO     | -- intersect: -52200986092.30339
[2025-06-02 22:41:44] 2025-06-02 20:34:56,142 | INFO     | intersect: -52200986092.30339
[2025-06-02 22:41:44] 2025-06-02 20:34:56,143 | INFO     | chi2: 8.0220590748461
[2025-06-02 22:41:44] 2025-06-02 20:34:56,143 | INFO     | sum of square deviations: 2710627567.5
[2025-06-02 22:41:44] 2025-06-02 20:34:56,152 | INFO     | sum of deviations: 99000609684.5
[2025-06-02 22:41:44] 2025-06-02 20:34:56,153 | INFO     | mean x: 1748889781.5
[2025-06-02 22:41:44] 2025-06-02 20:34:56,153 | INFO     | mean y: 2419561.296116505
[2025-06-02 22:41:44] 2025-06-02 20:34:56,153 | INFO     | -- intersect: -63872513577.96186
[2025-06-02 22:41:44] 2025-06-02 20:34:56,153 | INFO     | intersect: -63872513577.96186
[2025-06-02 22:41:44] 2025-06-02 20:34:56,153 | INFO     | chi2: 7.282037544377523
[2025-06-02 22:41:44] 2025-06-02 20:34:56,154 | INFO     | current chi2=7.282037544377523 (change=9.224832721426615 %)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,154 | INFO     | right removable region: 205
[2025-06-02 22:41:44] 2025-06-02 20:34:56,154 | INFO     | sum of square deviations: 2710627567.5
[2025-06-02 22:41:44] 2025-06-02 20:34:56,156 | INFO     | sum of deviations: 14709830238.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,156 | INFO     | mean x: 1748890086.5
[2025-06-02 22:41:44] 2025-06-02 20:34:56,156 | INFO     | mean y: 2465113.0388349514
[2025-06-02 22:41:44] 2025-06-02 20:34:56,156 | INFO     | -- intersect: -9488280345.977875
[2025-06-02 22:41:44] 2025-06-02 20:34:56,156 | INFO     | intersect: -9488280345.977875
[2025-06-02 22:41:44] 2025-06-02 20:34:56,157 | INFO     | chi2: 3.0203924925363395
[2025-06-02 22:41:44] 2025-06-02 20:34:56,157 | INFO     | current chi2=3.0203924925363395 (change=62.34891236332256 %)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,157 | INFO     | sum of square deviations: 2518000700.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,159 | INFO     | sum of deviations: -29980792095.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,159 | INFO     | mean x: 1748890239.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,159 | INFO     | mean y: 2500328.149253731
[2025-06-02 22:41:44] 2025-06-02 20:34:56,159 | INFO     | -- intersect: 20825812510.879726
[2025-06-02 22:41:44] 2025-06-02 20:34:56,159 | INFO     | intersect: 20825812510.879726
[2025-06-02 22:41:44] 2025-06-02 20:34:56,160 | INFO     | chi2: 1.0328910706123648
[2025-06-02 22:41:44] 2025-06-02 20:34:56,160 | INFO     | current chi2=1.0328910706123648 (change=65.80275334531088 %)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,160 | INFO     | sum of square deviations: 2334722845.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,180 | INFO     | sum of deviations: -31436202959.5
[2025-06-02 22:41:44] 2025-06-02 20:34:56,180 | INFO     | mean x: 1748890391.5
[2025-06-02 22:41:44] 2025-06-02 20:34:56,180 | INFO     | mean y: 2501470.4438775512
[2025-06-02 22:41:44] 2025-06-02 20:34:56,180 | INFO     | -- intersect: 23550681254.975613
[2025-06-02 22:41:44] 2025-06-02 20:34:56,181 | INFO     | intersect: 23550681254.975613
[2025-06-02 22:41:44] 2025-06-02 20:34:56,181 | INFO     | chi2: 0.9953436748592954
[2025-06-02 22:41:44] 2025-06-02 20:34:56,181 | INFO     | current chi2=0.9953436748592954 (change=3.6351747847726954 %)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,181 | INFO     | left removable region: 30
[2025-06-02 22:41:44] 2025-06-02 20:34:56,182 | INFO     | sum of square deviations: 1661798600.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,183 | INFO     | sum of deviations: 1975819585.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,183 | INFO     | mean x: 1748890666.0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,183 | INFO     | mean y: 2494255.4857142856
[2025-06-02 22:41:44] 2025-06-02 20:34:56,183 | INFO     | -- intersect: -2076874706.4970996
[2025-06-02 22:41:44] 2025-06-02 20:34:56,183 | INFO     | intersect: -2076874706.4970996
[2025-06-02 22:41:44] 2025-06-02 20:34:56,184 | INFO     | chi2: 0.03920397406282338
[2025-06-02 22:41:44] 2025-06-02 20:34:56,184 | INFO     | -- intersect: -2076874706.4970996
[2025-06-02 22:41:44] 2025-06-02 20:34:56,184 | INFO     | current memory leak: 1.19 B/s (using 175 data points, chi2=0.04)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,185 | INFO     | ..............................
[2025-06-02 22:41:44] 2025-06-02 20:34:56,185 | INFO     | . Timing measurements:
[2025-06-02 22:41:44] 2025-06-02 20:34:56,185 | INFO     | . get job = 0 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,185 | INFO     | . initial setup = 6 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,185 | INFO     | . payload setup = 165 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,186 | INFO     | . stage-in = 0 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,186 | INFO     | . payload execution = 13022 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,186 | INFO     | . stage-out = 4 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,186 | INFO     | . log creation = 1 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,186 | INFO     | ..............................
[2025-06-02 22:41:44] 2025-06-02 20:34:56,392 | INFO     | 
[2025-06-02 22:41:44] 2025-06-02 20:34:56,392 | INFO     | job summary report
[2025-06-02 22:41:44] 2025-06-02 20:34:56,392 | INFO     | --------------------------------------------------
[2025-06-02 22:41:44] 2025-06-02 20:34:56,392 | INFO     | PanDA job id: 6677380565
[2025-06-02 22:41:44] 2025-06-02 20:34:56,392 | INFO     | task id: 45006595
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | errors: (none)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | pilot state: finished 
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | transexitcode: 0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | exeerrorcode: 0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | exeerrordiag: 
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | exitcode: 0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | exitmsg: OK
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | cpuconsumptiontime: 47764 s
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | nevents: 400
[2025-06-02 22:41:44] 2025-06-02 20:34:56,393 | INFO     | neventsw: 0
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | pid: 19501
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | pgrp: 19501
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | corecount: 8
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | event service: False
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | sizes: {0: 2404348, 1: 2405205, 2: 2405205, 12: 2405233, 23: 2405261, 34: 2405289, 45: 2405445, 55: 2405473, 66: 2405501, 77: 2405529, 88: 2405585, 93: 2406099, 98
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | --------------------------------------------------
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | 
[2025-06-02 22:41:44] 2025-06-02 20:34:56,394 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-02 22:41:44] 2025-06-02 20:34:56,623 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,626 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:41:44] 2025-06-02 20:34:56,626 | INFO     | job 6677380565 has completed (purged errors)
[2025-06-02 22:41:44] 2025-06-02 20:34:56,626 | INFO     | overall cleanup function is called
[2025-06-02 22:41:44] 2025-06-02 20:34:57,637 | INFO     | --- collectZombieJob: --- 10, [19501]
[2025-06-02 22:41:44] 2025-06-02 20:34:57,637 | INFO     | zombie collector waiting for pid 19501
[2025-06-02 22:41:44] 2025-06-02 20:34:57,637 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:41:44] 2025-06-02 20:34:57,637 | INFO     | collected zombie processes
[2025-06-02 22:41:44] 2025-06-02 20:34:57,638 | INFO     | will attempt to kill all subprocesses of pid=19501
[2025-06-02 22:41:44] 2025-06-02 20:34:57,790 | INFO     | process IDs to be killed: [19501] (in reverse order)
[2025-06-02 22:41:44] 2025-06-02 20:34:58,522 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:41:44] 2025-06-02 20:34:58,522 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:41:44] 2025-06-02 20:34:58,525 | INFO     | did not find any defunct processes belonging to 19501
[2025-06-02 22:41:44] 2025-06-02 20:34:58,538 | INFO     | did not find any defunct processes belonging to 19501
[2025-06-02 22:41:44] 2025-06-02 20:34:58,539 | INFO     | ready for new job
[2025-06-02 22:41:44] 2025-06-02 20:34:58,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:41:44] 2025-06-02 20:34:58,541 | INFO     | **************************************
[2025-06-02 22:41:44] 2025-06-02 20:34:58,541 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:41:44] 2025-06-02 20:34:58,541 | INFO     | **************************************
[2025-06-02 22:41:44] 2025-06-02 20:34:58,541 | INFO     | 
[2025-06-02 22:41:44] 2025-06-02 20:34:58,542 | INFO     | pilot is running in a VM
[2025-06-02 22:41:44] 2025-06-02 20:34:58,542 | INFO     | architecture information:
[2025-06-02 22:41:44] 2025-06-02 20:34:58,547 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:41:44] 2025-06-02 20:34:58,700 | INFO     | cat /etc/os-release:
[2025-06-02 22:41:44] NAME="CentOS Linux"
[2025-06-02 22:41:44] VERSION="7 (Core)"
[2025-06-02 22:41:44] ID="centos"
[2025-06-02 22:41:44] ID_LIKE="rhel fedora"
[2025-06-02 22:41:44] VERSION_ID="7"
[2025-06-02 22:41:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:41:44] ANSI_COLOR="0;31"
[2025-06-02 22:41:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:41:44] HOME_URL="https://www.centos.org/"
[2025-06-02 22:41:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:41:44] 
[2025-06-02 22:41:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:41:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:41:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:41:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:41:44] 
[2025-06-02 22:41:44] 2025-06-02 20:34:58,700 | INFO     | **************************************
[2025-06-02 22:41:44] 2025-06-02 20:34:59,205 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-02 22:41:44] 2025-06-02 20:34:59,250 | INFO     | sufficient remaining disk space (496820551680 B)
[2025-06-02 22:41:44] 2025-06-02 20:34:59,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:41:44] 2025-06-02 20:34:59,251 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:41:44] 2025-06-02 20:34:59,251 | INFO     | update_server=False
[2025-06-02 22:41:44] 2025-06-02 20:34:59,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:41:44] 2025-06-02 20:34:59,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:41:44] 2025-06-02 20:34:59,252 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:41:44] 2025-06-02 20:34:59,253 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:41:44] 2025-06-02 20:34:59,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:41:44] 2025-06-02 20:34:59,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:41:44] 2025-06-02 20:34:59,292 | INFO     | all data control threads have been joined
[2025-06-02 22:41:44] 2025-06-02 20:34:59,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:41:44] 2025-06-02 20:34:59,632 | INFO     | aborting loop
[2025-06-02 22:41:44] 2025-06-02 20:35:00,257 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:00,298 | INFO     | [data] control thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:00,429 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:00,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:00,559 | INFO     | all payload control threads have been joined
[2025-06-02 22:41:44] 2025-06-02 20:35:00,638 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:00,676 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:00,739 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:41:44] 2025-06-02 20:35:00,800 | INFO     | all job control threads have been joined
[2025-06-02 22:41:44] 2025-06-02 20:35:00,846 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:01,264 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:01,398 | INFO     | [job] validate thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:01,401 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:41:44] 2025-06-02 20:35:01,419 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:01,423 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:01,565 | INFO     | [payload] control thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:01,806 | INFO     | [job] control thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:02,407 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:02,746 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:03,262 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:41:44] 2025-06-02 20:35:04,579 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140063394576192)>', '<ExcThread(monitor, started 140062935197440)>']
[2025-06-02 22:41:44] 2025-06-02 20:35:05,288 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:41:44] 2025-06-02 20:35:05,288 | INFO     | [monitor] control thread has ended
[2025-06-02 22:41:44] 2025-06-02 20:35:09,605 | INFO     | all workflow threads have been joined
[2025-06-02 22:41:44] 2025-06-02 20:35:09,605 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:41:44] 2025-06-02 20:35:09,605 | INFO     | traces error code: 0
[2025-06-02 22:41:44] 2025-06-02 20:35:09,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:41:44] 2025-06-02 20:35:10,010 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:41:44] 2025-06-02 20:35:10,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:41:44] 2025-06-02 20:35:10,177 [wrapper] pilotpid: 10928
[2025-06-02 22:41:44] 2025-06-02 20:35:10,244 [wrapper] Pilot exit status: 0
[2025-06-02 22:41:44] 2025-06-02 20:35:10,398 [wrapper] pandaids: 6677380565
[2025-06-02 22:41:44] 2025-06-02 20:35:11,135 [wrapper] cleanup supervisor_pilot 18764 10929
[2025-06-02 22:41:44] 2025-06-02 20:35:11,187 [wrapper] Test setup, not cleaning
[2025-06-02 22:41:44] 2025-06-02 20:35:11,227 [wrapper] apfmon messages muted
[2025-06-02 22:41:44] 2025-06-02 20:35:11,309 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:41:44] 2025-06-02 20:35:11,363 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:41:44]  *** Error codes and diagnostics ***
[2025-06-02 22:41:45]     "exeErrorCode": 0,
[2025-06-02 22:41:45]     "exeErrorDiag": "",
[2025-06-02 22:41:45]     "pilotErrorCode": 0,
[2025-06-02 22:41:45]     "pilotErrorDiag": "",
[2025-06-02 22:41:45]  *** Listing of results directory ***
[2025-06-02 22:41:45] total 395688
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:41:45] -rwx------. 1 boinc boinc     37140 Jun  2 17:51 runpilot2-wrapper.sh
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:53 queuedata.json
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc       100 Jun  2 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:41:45] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 18:36 run_atlas
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc       105 Jun  2 18:36 job.xml
[2025-06-02 22:41:45] -rw-r--r--. 2 boinc boinc 216484172 Jun  2 18:36 EVNT.45006593._000088.pool.root.1
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc      6391 Jun  2 18:36 init_data.xml
[2025-06-02 22:41:45] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:36 start_atlas.sh
[2025-06-02 22:41:45] drwxrwx--x. 2 boinc boinc        68 Jun  2 18:36 shared
[2025-06-02 22:41:45] -rw-r--r--. 2 boinc boinc    508879 Jun  2 18:36 input.tar.gz
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc         0 Jun  2 18:36 boinc_lockfile
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc      2521 Jun  2 18:46 pandaJob.out
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc    988298 Jun  2 18:50 agis_schedconf.cvmfs.json
[2025-06-02 22:41:45] drwx------. 4 boinc boinc      4096 Jun  2 18:50 pilot3
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc 181783194 Jun  2 22:32 HITS.45006595._002197.pool.root.1
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc       531 Jun  2 22:32 boinc_task_state.xml
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc      1015 Jun  2 22:33 memory_monitor_summary.json
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc   1603667 Jun  2 22:33 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc    387177 Jun  2 22:33 log.45006595._002197.job.log.tgz.1
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc        95 Jun  2 22:34 pilot_heartbeat.json
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc      7688 Jun  2 22:34 heartbeat.json
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc      4540 Jun  2 22:35 pilotlog.txt
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc   1158615 Jun  2 22:35 log.45006595._002197.job.log.1
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc       357 Jun  2 22:35 output.list
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc       620 Jun  2 22:35 runtime_log
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc   1566720 Jun  2 22:35 result.tar.gz
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc      8673 Jun  2 22:35 runtime_log.err
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc       657 Jun  2 22:35 QOrMDm2cMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJgVKDmzGfdOo.diag
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:41 boinc_mmap_file
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:41 wrapper_checkpoint.txt
[2025-06-02 22:41:45] -rw-r--r--. 1 boinc boinc     20498 Jun  2 22:41 stderr.txt
[2025-06-02 22:41:45] HITS file was successfully produced:
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc 181783194 Jun  2 22:32 shared/HITS.pool.root.1
[2025-06-02 22:41:45]  *** Contents of shared directory: ***
[2025-06-02 22:41:45] total 390984
[2025-06-02 22:41:45] -rw-r--r--. 2 boinc boinc 216484172 Jun  2 18:36 ATLAS.root_0
[2025-06-02 22:41:45] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:36 start_atlas.sh
[2025-06-02 22:41:45] -rw-r--r--. 2 boinc boinc    508879 Jun  2 18:36 input.tar.gz
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc 181783194 Jun  2 22:32 HITS.pool.root.1
[2025-06-02 22:41:45] -rw-------. 1 boinc boinc   1566720 Jun  2 22:35 result.tar.gz
22:41:46 (26940): run_atlas exited; CPU time 47942.333586
22:41:46 (26940): called boinc_finish(0)

</stderr_txt>
]]>

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