Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:30:46 (750): wrapper (7.7.26015): starting
18:30:46 (750): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 18:30:46] Arguments: --nthreads 8
[2025-06-02 18:30:46] Threads: 8
[2025-06-02 18:30:46] Checking for CVMFS
[2025-06-02 18:30:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 18:30:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 18:30:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 18:30:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 18:30:49] 2.11.2.0 15360 30565 102016 146710 3 170 21364211 25165824 4632 130560 0 15526953 99.777 17281211 2081 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 18:30:49] CVMFS is ok
[2025-06-02 18:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 18:30:49] Checking for apptainer binary...
[2025-06-02 18:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 18:30:49] Running /usr/bin/apptainer --version
[2025-06-02 18:30:49] apptainer version 1.3.2-1.el7
[2025-06-02 18:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:30:55] cg-vwn250.simple-grid.lan
[2025-06-02 18:30:55] apptainer works
[2025-06-02 18:30:55] Set ATHENA_PROC_NUMBER=8
[2025-06-02 18:30:55] Set ATHENA_CORE_NUMBER=8
[2025-06-02 18:30:55] Starting ATLAS job with PandaID=6677379849
[2025-06-02 18:30:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:40:32]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:40:32] 2025-06-02 20:26:43,620 | INFO     | extracted standard info from prmon json
[2025-06-02 22:40:32] 2025-06-02 20:26:43,620 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 22:40:32] 2025-06-02 20:26:43,620 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:40:32] 2025-06-02 20:26:43,621 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:40:32] 2025-06-02 20:26:43,621 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:40:32] 2025-06-02 20:26:43,626 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:40:32] 2025-06-02 20:26:43,626 | INFO     | sum of square deviations: 3256879670.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,628 | INFO     | sum of deviations: 45634162342.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,628 | INFO     | mean x: 1748889216.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,628 | INFO     | mean y: 2453090.1506849313
[2025-06-02 22:40:32] 2025-06-02 20:26:43,629 | INFO     | -- intersect: -24502319111.370995
[2025-06-02 22:40:32] 2025-06-02 20:26:43,629 | INFO     | intersect: -24502319111.370995
[2025-06-02 22:40:32] 2025-06-02 20:26:43,629 | INFO     | chi2: 6.575316175555722
[2025-06-02 22:40:32] 2025-06-02 20:26:43,630 | INFO     | sum of square deviations: 3038856977.5
[2025-06-02 22:40:32] 2025-06-02 20:26:43,631 | INFO     | sum of deviations: 59172085681.50001
[2025-06-02 22:40:32] 2025-06-02 20:26:43,631 | INFO     | mean x: 1748889063.5
[2025-06-02 22:40:32] 2025-06-02 20:26:43,632 | INFO     | mean y: 2462372.8271028036
[2025-06-02 22:40:32] 2025-06-02 20:26:43,632 | INFO     | -- intersect: -34051596202.182064
[2025-06-02 22:40:32] 2025-06-02 20:26:43,632 | INFO     | intersect: -34051596202.182064
[2025-06-02 22:40:32] 2025-06-02 20:26:43,632 | INFO     | chi2: 5.867281153270184
[2025-06-02 22:40:32] 2025-06-02 20:26:43,632 | INFO     | current chi2=5.867281153270184 (change=10.768075684599259 %)
[2025-06-02 22:40:32] 2025-06-02 20:26:43,632 | INFO     | right removable region: 213
[2025-06-02 22:40:32] 2025-06-02 20:26:43,633 | INFO     | sum of square deviations: 3038856977.5
[2025-06-02 22:40:32] 2025-06-02 20:26:43,635 | INFO     | sum of deviations: -29327628952.499992
[2025-06-02 22:40:32] 2025-06-02 20:26:43,635 | INFO     | mean x: 1748889368.5
[2025-06-02 22:40:32] 2025-06-02 20:26:43,635 | INFO     | mean y: 2505465.1261682245
[2025-06-02 22:40:32] 2025-06-02 20:26:43,635 | INFO     | -- intersect: 16880818218.277128
[2025-06-02 22:40:32] 2025-06-02 20:26:43,635 | INFO     | intersect: 16880818218.277128
[2025-06-02 22:40:32] 2025-06-02 20:26:43,635 | INFO     | chi2: 1.8746150292769852
[2025-06-02 22:40:32] 2025-06-02 20:26:43,635 | INFO     | current chi2=1.8746150292769852 (change=71.49011577198341 %)
[2025-06-02 22:40:32] 2025-06-02 20:26:43,636 | INFO     | sum of square deviations: 2830787960.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,638 | INFO     | sum of deviations: -56021479387.999985
[2025-06-02 22:40:32] 2025-06-02 20:26:43,638 | INFO     | mean x: 1748889521.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,638 | INFO     | mean y: 2524860.4832535884
[2025-06-02 22:40:32] 2025-06-02 20:26:43,638 | INFO     | -- intersect: 34613163183.4577
[2025-06-02 22:40:32] 2025-06-02 20:26:43,638 | INFO     | intersect: 34613163183.4577
[2025-06-02 22:40:32] 2025-06-02 20:26:43,639 | INFO     | chi2: 1.0093925559451298
[2025-06-02 22:40:32] 2025-06-02 20:26:43,639 | INFO     | current chi2=1.0093925559451298 (change=46.15467495027822 %)
[2025-06-02 22:40:32] 2025-06-02 20:26:43,639 | INFO     | sum of square deviations: 2632440055.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,641 | INFO     | sum of deviations: -57752794075.999985
[2025-06-02 22:40:32] 2025-06-02 20:26:43,641 | INFO     | mean x: 1748889673.5
[2025-06-02 22:40:32] 2025-06-02 20:26:43,641 | INFO     | mean y: 2526165.68627451
[2025-06-02 22:40:32] 2025-06-02 20:26:43,641 | INFO     | -- intersect: 38371211896.41921
[2025-06-02 22:40:32] 2025-06-02 20:26:43,641 | INFO     | intersect: 38371211896.41921
[2025-06-02 22:40:32] 2025-06-02 20:26:43,642 | INFO     | chi2: 0.9812693879393501
[2025-06-02 22:40:32] 2025-06-02 20:26:43,642 | INFO     | current chi2=0.9812693879393501 (change=2.786147751946409 %)
[2025-06-02 22:40:32] 2025-06-02 20:26:43,642 | INFO     | left removable region: 30
[2025-06-02 22:40:32] 2025-06-02 20:26:43,642 | INFO     | sum of square deviations: 1900284932.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,643 | INFO     | sum of deviations: -23727580652.000008
[2025-06-02 22:40:32] 2025-06-02 20:26:43,644 | INFO     | mean x: 1748889948.0
[2025-06-02 22:40:32] 2025-06-02 20:26:43,644 | INFO     | mean y: 2521043.3278688523
[2025-06-02 22:40:32] 2025-06-02 20:26:43,644 | INFO     | -- intersect: 21839734291.64199
[2025-06-02 22:40:32] 2025-06-02 20:26:43,644 | INFO     | intersect: 21839734291.64199
[2025-06-02 22:40:32] 2025-06-02 20:26:43,644 | INFO     | chi2: 0.15193721657061546
[2025-06-02 22:40:32] 2025-06-02 20:26:43,644 | INFO     | -- intersect: 21839734291.64199
[2025-06-02 22:40:32] 2025-06-02 20:26:43,645 | INFO     | current memory leak: -12.49 B/s (using 183 data points, chi2=0.15)
[2025-06-02 22:40:32] 2025-06-02 20:26:43,645 | INFO     | ..............................
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . Timing measurements:
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . get job = 0 s
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . initial setup = 11 s
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . payload setup = 176 s
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . stage-in = 0 s
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . payload execution = 13490 s
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . stage-out = 4 s
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | . log creation = 1 s
[2025-06-02 22:40:32] 2025-06-02 20:26:43,646 | INFO     | ..............................
[2025-06-02 22:40:32] 2025-06-02 20:26:44,201 | INFO     | 
[2025-06-02 22:40:32] 2025-06-02 20:26:44,201 | INFO     | job summary report
[2025-06-02 22:40:32] 2025-06-02 20:26:44,201 | INFO     | --------------------------------------------------
[2025-06-02 22:40:32] 2025-06-02 20:26:44,201 | INFO     | PanDA job id: 6677379849
[2025-06-02 22:40:32] 2025-06-02 20:26:44,201 | INFO     | task id: 45006595
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | errors: (none)
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | pilot state: finished 
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | transexitcode: 0
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | exeerrorcode: 0
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | exeerrordiag: 
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | exitcode: 0
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | exitmsg: OK
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | cpuconsumptiontime: 49886 s
[2025-06-02 22:40:32] 2025-06-02 20:26:44,202 | INFO     | nevents: 400
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | neventsw: 0
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | pid: 21077
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | pgrp: 21077
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | corecount: 8
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | event service: False
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | sizes: {0: 2405006, 1: 2405205, 12: 2405205, 23: 2405233, 33: 2405261, 44: 2405317, 55: 2405473, 65: 2405501, 76: 2405529, 87: 2405585, 90: 2405819, 98: 2406127, 1
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | --------------------------------------------------
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | 
[2025-06-02 22:40:32] 2025-06-02 20:26:44,203 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-02 22:40:32] 2025-06-02 20:26:44,426 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,428 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:40:32] 2025-06-02 20:26:44,429 | INFO     | job 6677379849 has completed (purged errors)
[2025-06-02 22:40:32] 2025-06-02 20:26:44,429 | INFO     | overall cleanup function is called
[2025-06-02 22:40:32] 2025-06-02 20:26:45,436 | INFO     | --- collectZombieJob: --- 10, [21077]
[2025-06-02 22:40:32] 2025-06-02 20:26:45,436 | INFO     | zombie collector waiting for pid 21077
[2025-06-02 22:40:32] 2025-06-02 20:26:45,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:40:32] 2025-06-02 20:26:45,436 | INFO     | collected zombie processes
[2025-06-02 22:40:32] 2025-06-02 20:26:45,436 | INFO     | will attempt to kill all subprocesses of pid=21077
[2025-06-02 22:40:32] 2025-06-02 20:26:45,560 | INFO     | process IDs to be killed: [21077] (in reverse order)
[2025-06-02 22:40:32] 2025-06-02 20:26:46,396 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:40:32] 2025-06-02 20:26:46,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:40:32] 2025-06-02 20:26:46,399 | INFO     | did not find any defunct processes belonging to 21077
[2025-06-02 22:40:32] 2025-06-02 20:26:46,402 | INFO     | did not find any defunct processes belonging to 21077
[2025-06-02 22:40:32] 2025-06-02 20:26:46,403 | INFO     | ready for new job
[2025-06-02 22:40:32] 2025-06-02 20:26:46,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:40:32] 2025-06-02 20:26:46,405 | INFO     | **************************************
[2025-06-02 22:40:32] 2025-06-02 20:26:46,405 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:40:32] 2025-06-02 20:26:46,405 | INFO     | **************************************
[2025-06-02 22:40:32] 2025-06-02 20:26:46,405 | INFO     | 
[2025-06-02 22:40:32] 2025-06-02 20:26:46,406 | INFO     | pilot is running in a VM
[2025-06-02 22:40:32] 2025-06-02 20:26:46,406 | INFO     | architecture information:
[2025-06-02 22:40:32] 2025-06-02 20:26:46,407 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:40:32] 2025-06-02 20:26:46,506 | INFO     | cat /etc/os-release:
[2025-06-02 22:40:32] NAME="CentOS Linux"
[2025-06-02 22:40:32] VERSION="7 (Core)"
[2025-06-02 22:40:32] ID="centos"
[2025-06-02 22:40:32] ID_LIKE="rhel fedora"
[2025-06-02 22:40:32] VERSION_ID="7"
[2025-06-02 22:40:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:40:32] ANSI_COLOR="0;31"
[2025-06-02 22:40:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:40:32] HOME_URL="https://www.centos.org/"
[2025-06-02 22:40:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:40:32] 
[2025-06-02 22:40:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:40:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:40:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:40:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:40:32] 
[2025-06-02 22:40:32] 2025-06-02 20:26:46,506 | INFO     | **************************************
[2025-06-02 22:40:32] 2025-06-02 20:26:47,010 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-02 22:40:32] 2025-06-02 20:26:47,103 | INFO     | sufficient remaining disk space (496719888384 B)
[2025-06-02 22:40:32] 2025-06-02 20:26:47,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:40:32] 2025-06-02 20:26:47,104 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:40:32] 2025-06-02 20:26:47,104 | INFO     | update_server=False
[2025-06-02 22:40:32] 2025-06-02 20:26:47,104 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:40:32] 2025-06-02 20:26:47,105 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:40:32] 2025-06-02 20:26:47,105 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:40:32] 2025-06-02 20:26:47,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:40:32] 2025-06-02 20:26:47,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:40:32] 2025-06-02 20:26:47,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:40:32] 2025-06-02 20:26:47,384 | INFO     | all data control threads have been joined
[2025-06-02 22:40:32] 2025-06-02 20:26:47,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:40:32] 2025-06-02 20:26:47,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:40:32] 2025-06-02 20:26:47,953 | INFO     | aborting loop
[2025-06-02 22:40:32] 2025-06-02 20:26:48,110 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:48,252 | INFO     | all payload control threads have been joined
[2025-06-02 22:40:32] 2025-06-02 20:26:48,389 | INFO     | [data] control thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:48,475 | INFO     | all job control threads have been joined
[2025-06-02 22:40:32] 2025-06-02 20:26:48,735 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:48,812 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:40:32] 2025-06-02 20:26:48,823 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:48,934 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:48,939 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:48,960 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:48,992 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:49,196 | INFO     | [job] validate thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:49,258 | INFO     | [payload] control thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:49,261 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:49,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:49,484 | INFO     | [job] control thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:49,603 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:49,818 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:51,116 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:40:32] 2025-06-02 20:26:52,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140426714093376)>', '<ExcThread(monitor, started 140426279372544)>']
[2025-06-02 22:40:32] 2025-06-02 20:26:53,141 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:40:32] 2025-06-02 20:26:53,141 | INFO     | [monitor] control thread has ended
[2025-06-02 22:40:32] 2025-06-02 20:26:57,726 | INFO     | all workflow threads have been joined
[2025-06-02 22:40:32] 2025-06-02 20:26:57,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:40:32] 2025-06-02 20:26:57,726 | INFO     | traces error code: 0
[2025-06-02 22:40:32] 2025-06-02 20:26:57,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:40:32] 2025-06-02 20:26:58,319 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:40:32] 2025-06-02 20:26:58,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:40:32] 2025-06-02 20:26:58,474 [wrapper] pilotpid: 6475
[2025-06-02 22:40:32] 2025-06-02 20:26:58,572 [wrapper] Pilot exit status: 0
[2025-06-02 22:40:32] 2025-06-02 20:26:58,967 [wrapper] pandaids: 6677379849
[2025-06-02 22:40:32] 2025-06-02 20:27:00,043 [wrapper] cleanup supervisor_pilot 29691 6476
[2025-06-02 22:40:32] 2025-06-02 20:27:00,115 [wrapper] Test setup, not cleaning
[2025-06-02 22:40:32] 2025-06-02 20:27:00,188 [wrapper] apfmon messages muted
[2025-06-02 22:40:32] 2025-06-02 20:27:00,281 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:40:32] 2025-06-02 20:27:00,416 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:40:32]  *** Error codes and diagnostics ***
[2025-06-02 22:40:32]     "exeErrorCode": 0,
[2025-06-02 22:40:32]     "exeErrorDiag": "",
[2025-06-02 22:40:32]     "pilotErrorCode": 0,
[2025-06-02 22:40:32]     "pilotErrorDiag": "",
[2025-06-02 22:40:32]  *** Listing of results directory ***
[2025-06-02 22:40:32] total 396060
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-02 22:40:32] -rwx------. 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc       100 Jun  2 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:40:32] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 18:30 run_atlas
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc       105 Jun  2 18:30 job.xml
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc      6393 Jun  2 18:30 init_data.xml
[2025-06-02 22:40:32] -rw-r--r--. 2 boinc boinc 215637426 Jun  2 18:30 EVNT.45006593._000077.pool.root.1
[2025-06-02 22:40:32] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:30 start_atlas.sh
[2025-06-02 22:40:32] drwxrwx--x. 2 boinc boinc        68 Jun  2 18:30 shared
[2025-06-02 22:40:32] -rw-r--r--. 2 boinc boinc    508874 Jun  2 18:30 input.tar.gz
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc         0 Jun  2 18:30 boinc_lockfile
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc      2521 Jun  2 18:30 pandaJob.out
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc    988242 Jun  2 18:33 agis_schedconf.cvmfs.json
[2025-06-02 22:40:32] drwx------. 4 boinc boinc      4096 Jun  2 18:34 pilot3
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc 182985420 Jun  2 22:23 HITS.45006595._001907.pool.root.1
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc       531 Jun  2 22:23 boinc_task_state.xml
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc      1017 Jun  2 22:25 memory_monitor_summary.json
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc   1603667 Jun  2 22:25 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc    372834 Jun  2 22:25 log.45006595._001907.job.log.tgz.1
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc        95 Jun  2 22:26 pilot_heartbeat.json
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc      7689 Jun  2 22:26 heartbeat.json
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc      4540 Jun  2 22:26 pilotlog.txt
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc   1186910 Jun  2 22:27 log.45006595._001907.job.log.1
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc       357 Jun  2 22:27 output.list
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc       620 Jun  2 22:27 runtime_log
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc   1576960 Jun  2 22:27 result.tar.gz
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc      8673 Jun  2 22:27 runtime_log.err
[2025-06-02 22:40:32] -rw-------. 1 boinc boinc       657 Jun  2 22:27 DzrMDmsbMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE7eKDmoS9r0m.diag
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:40 boinc_mmap_file
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:40 wrapper_checkpoint.txt
[2025-06-02 22:40:32] -rw-r--r--. 1 boinc boinc     20519 Jun  2 22:40 stderr.txt
[2025-06-02 22:40:32] HITS file was successfully produced:
[2025-06-02 22:40:33] -rw-------. 1 boinc boinc 182985420 Jun  2 22:23 shared/HITS.pool.root.1
[2025-06-02 22:40:33]  *** Contents of shared directory: ***
[2025-06-02 22:40:33] total 391340
[2025-06-02 22:40:33] -rw-r--r--. 2 boinc boinc 215637426 Jun  2 18:30 ATLAS.root_0
[2025-06-02 22:40:33] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:30 start_atlas.sh
[2025-06-02 22:40:33] -rw-r--r--. 2 boinc boinc    508874 Jun  2 18:30 input.tar.gz
[2025-06-02 22:40:33] -rw-------. 1 boinc boinc 182985420 Jun  2 22:23 HITS.pool.root.1
[2025-06-02 22:40:33] -rw-------. 1 boinc boinc   1576960 Jun  2 22:27 result.tar.gz
22:40:34 (750): run_atlas exited; CPU time 50072.893483
22:40:34 (750): called boinc_finish(0)

</stderr_txt>
]]>

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