Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:24:01 (1444): wrapper (7.7.26015): starting
18:24:01 (1444): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 18:24:01] Arguments: --nthreads 8
[2025-06-02 18:24:01] Threads: 8
[2025-06-02 18:24:01] Checking for CVMFS
[2025-06-02 18:24:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 18:24:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 18:24:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 18:24:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 18:24:04] 2.11.2.0 26867 30563 92512 146710 0 16 24726615 25165825 4634 130560 0 15478559 99.828 17065814 1931 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 18:24:04] CVMFS is ok
[2025-06-02 18:24:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 18:24:04] Checking for apptainer binary...
[2025-06-02 18:24:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 18:24:04] Running /usr/bin/apptainer --version
[2025-06-02 18:24:04] apptainer version 1.3.2-1.el7
[2025-06-02 18:24:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:24:22] cg-vwn435.simple-grid.lan
[2025-06-02 18:24:22] apptainer works
[2025-06-02 18:24:22] Set ATHENA_PROC_NUMBER=8
[2025-06-02 18:24:22] Set ATHENA_CORE_NUMBER=8
[2025-06-02 18:24:22] Starting ATLAS job with PandaID=6677379828
[2025-06-02 18:24:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 23:16:46]  *** The last 200 lines of the pilot log: ***
[2025-06-02 23:16:46] 2025-06-02 20:15:39,818 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 23:16:46] 2025-06-02 20:15:39,818 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 23:16:46] 2025-06-02 20:15:39,819 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 23:16:46] 2025-06-02 20:15:39,819 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 23:16:46] 2025-06-02 20:15:39,823 | INFO     | fitting pss+swap vs Time
[2025-06-02 23:16:46] 2025-06-02 20:15:39,824 | INFO     | sum of square deviations: 3038856977.5
[2025-06-02 23:16:46] 2025-06-02 20:15:39,826 | INFO     | sum of deviations: 64082312675.99997
[2025-06-02 23:16:46] 2025-06-02 20:15:39,826 | INFO     | mean x: 1748888691.5
[2025-06-02 23:16:46] 2025-06-02 20:15:39,826 | INFO     | mean y: 2439873.6728971964
[2025-06-02 23:16:46] 2025-06-02 20:15:39,826 | INFO     | -- intersect: -36877489913.751076
[2025-06-02 23:16:46] 2025-06-02 20:15:39,826 | INFO     | intersect: -36877489913.751076
[2025-06-02 23:16:46] 2025-06-02 20:15:39,827 | INFO     | chi2: 8.540054179263713
[2025-06-02 23:16:46] 2025-06-02 20:15:39,827 | INFO     | sum of square deviations: 2830787960.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,829 | INFO     | sum of deviations: 76873538035.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,829 | INFO     | mean x: 1748888539.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,829 | INFO     | mean y: 2449052.4784688996
[2025-06-02 23:16:46] 2025-06-02 20:15:39,829 | INFO     | -- intersect: -47490775986.45807
[2025-06-02 23:16:46] 2025-06-02 20:15:39,830 | INFO     | intersect: -47490775986.45807
[2025-06-02 23:16:46] 2025-06-02 20:15:39,830 | INFO     | chi2: 7.859480661212369
[2025-06-02 23:16:46] 2025-06-02 20:15:39,830 | INFO     | current chi2=7.859480661212369 (change=7.969194384080828 %)
[2025-06-02 23:16:46] 2025-06-02 20:15:39,830 | INFO     | right removable region: 208
[2025-06-02 23:16:46] 2025-06-02 20:15:39,830 | INFO     | sum of square deviations: 2830787960.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,832 | INFO     | sum of deviations: -11211543495.000008
[2025-06-02 23:16:46] 2025-06-02 20:15:39,832 | INFO     | mean x: 1748888844.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,832 | INFO     | mean y: 2495024.5358851673
[2025-06-02 23:16:46] 2025-06-02 20:15:39,833 | INFO     | -- intersect: 6929097659.381867
[2025-06-02 23:16:46] 2025-06-02 20:15:39,833 | INFO     | intersect: 6929097659.381867
[2025-06-02 23:16:46] 2025-06-02 20:15:39,833 | INFO     | chi2: 3.3028463515752824
[2025-06-02 23:16:46] 2025-06-02 20:15:39,833 | INFO     | current chi2=3.3028463515752824 (change=61.32522953314519 %)
[2025-06-02 23:16:46] 2025-06-02 20:15:39,834 | INFO     | sum of square deviations: 2632440055.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,835 | INFO     | sum of deviations: -59355739083.00001
[2025-06-02 23:16:46] 2025-06-02 20:15:39,835 | INFO     | mean x: 1748888996.5
[2025-06-02 23:16:46] 2025-06-02 20:15:39,835 | INFO     | mean y: 2531882.137254902
[2025-06-02 23:16:46] 2025-06-02 20:15:39,835 | INFO     | -- intersect: 39436135988.037285
[2025-06-02 23:16:46] 2025-06-02 20:15:39,836 | INFO     | intersect: 39436135988.037285
[2025-06-02 23:16:46] 2025-06-02 20:15:39,836 | INFO     | chi2: 1.0718724800299844
[2025-06-02 23:16:46] 2025-06-02 20:15:39,836 | INFO     | current chi2=1.0718724800299844 (change=67.54700746164718 %)
[2025-06-02 23:16:46] 2025-06-02 20:15:39,836 | INFO     | sum of square deviations: 2443580700.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,838 | INFO     | sum of deviations: -62830541070.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,838 | INFO     | mean x: 1748889149.0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,838 | INFO     | mean y: 2534606.59798995
[2025-06-02 23:16:46] 2025-06-02 20:15:39,838 | INFO     | -- intersect: 44970827040.370224
[2025-06-02 23:16:46] 2025-06-02 20:15:39,838 | INFO     | intersect: 44970827040.370224
[2025-06-02 23:16:46] 2025-06-02 20:15:39,839 | INFO     | chi2: 0.9917074403655064
[2025-06-02 23:16:46] 2025-06-02 20:15:39,839 | INFO     | current chi2=0.9917074403655064 (change=7.478971720799795 %)
[2025-06-02 23:16:46] 2025-06-02 20:15:39,839 | INFO     | left removable region: 30
[2025-06-02 23:16:46] 2025-06-02 20:15:39,839 | INFO     | sum of square deviations: 1748737904.5
[2025-06-02 23:16:46] 2025-06-02 20:15:39,841 | INFO     | sum of deviations: -30374059857.500004
[2025-06-02 23:16:46] 2025-06-02 20:15:39,841 | INFO     | mean x: 1748889423.5
[2025-06-02 23:16:46] 2025-06-02 20:15:39,841 | INFO     | mean y: 2530546.724719101
[2025-06-02 23:16:46] 2025-06-02 20:15:39,841 | INFO     | -- intersect: 30379222157.767498
[2025-06-02 23:16:46] 2025-06-02 20:15:39,841 | INFO     | intersect: 30379222157.767498
[2025-06-02 23:16:46] 2025-06-02 20:15:39,841 | INFO     | chi2: 0.1739459298600748
[2025-06-02 23:16:46] 2025-06-02 20:15:39,842 | INFO     | -- intersect: 30379222157.767498
[2025-06-02 23:16:46] 2025-06-02 20:15:39,842 | INFO     | current memory leak: -17.37 B/s (using 178 data points, chi2=0.17)
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | ..............................
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . Timing measurements:
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . get job = 0 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . initial setup = 4 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . payload setup = 208 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . stage-in = 0 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . payload execution = 13197 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . stage-out = 6 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | . log creation = 1 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,843 | INFO     | ..............................
[2025-06-02 23:16:46] 2025-06-02 20:15:39,992 | INFO     | 
[2025-06-02 23:16:46] 2025-06-02 20:15:39,992 | INFO     | job summary report
[2025-06-02 23:16:46] 2025-06-02 20:15:39,992 | INFO     | --------------------------------------------------
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | PanDA job id: 6677379828
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | task id: 45006595
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | errors: (none)
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | pilot state: finished 
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | transexitcode: 0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | exeerrorcode: 0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | exeerrordiag: 
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | exitcode: 0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | exitmsg: OK
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | cpuconsumptiontime: 48714 s
[2025-06-02 23:16:46] 2025-06-02 20:15:39,993 | INFO     | nevents: 400
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | neventsw: 0
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | pid: 17380
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | pgrp: 17380
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | corecount: 8
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | event service: False
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | sizes: {0: 2405005, 1: 2405204, 12: 2405204, 23: 2405232, 33: 2405260, 44: 2405316, 55: 2405472, 65: 2405500, 76: 2405528, 87: 2405584, 97: 2405818, 98: 2406126, 1
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | --------------------------------------------------
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | 
[2025-06-02 23:16:46] 2025-06-02 20:15:39,994 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-02 23:16:46] 2025-06-02 20:15:40,642 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,642 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,642 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,642 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 23:16:46] 2025-06-02 20:15:40,644 | INFO     | job 6677379828 has completed (purged errors)
[2025-06-02 23:16:46] 2025-06-02 20:15:40,645 | INFO     | overall cleanup function is called
[2025-06-02 23:16:46] 2025-06-02 20:15:41,653 | INFO     | --- collectZombieJob: --- 10, [17380]
[2025-06-02 23:16:46] 2025-06-02 20:15:41,654 | INFO     | zombie collector waiting for pid 17380
[2025-06-02 23:16:46] 2025-06-02 20:15:41,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 23:16:46] 2025-06-02 20:15:41,654 | INFO     | collected zombie processes
[2025-06-02 23:16:46] 2025-06-02 20:15:41,654 | INFO     | will attempt to kill all subprocesses of pid=17380
[2025-06-02 23:16:46] 2025-06-02 20:15:41,785 | INFO     | process IDs to be killed: [17380] (in reverse order)
[2025-06-02 23:16:46] 2025-06-02 20:15:42,551 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 23:16:46] 2025-06-02 20:15:42,552 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 23:16:46] 2025-06-02 20:15:42,555 | INFO     | did not find any defunct processes belonging to 17380
[2025-06-02 23:16:46] 2025-06-02 20:15:42,558 | INFO     | did not find any defunct processes belonging to 17380
[2025-06-02 23:16:46] 2025-06-02 20:15:42,559 | INFO     | ready for new job
[2025-06-02 23:16:46] 2025-06-02 20:15:42,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 23:16:46] 2025-06-02 20:15:42,561 | INFO     | **************************************
[2025-06-02 23:16:46] 2025-06-02 20:15:42,561 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 23:16:46] 2025-06-02 20:15:42,561 | INFO     | **************************************
[2025-06-02 23:16:46] 2025-06-02 20:15:42,561 | INFO     | 
[2025-06-02 23:16:46] 2025-06-02 20:15:42,562 | INFO     | pilot is running in a VM
[2025-06-02 23:16:46] 2025-06-02 20:15:42,562 | INFO     | architecture information:
[2025-06-02 23:16:46] 2025-06-02 20:15:42,576 | INFO     | executing command: cat /etc/os-release
[2025-06-02 23:16:46] 2025-06-02 20:15:42,875 | INFO     | cat /etc/os-release:
[2025-06-02 23:16:46] NAME="CentOS Linux"
[2025-06-02 23:16:46] VERSION="7 (Core)"
[2025-06-02 23:16:46] ID="centos"
[2025-06-02 23:16:46] ID_LIKE="rhel fedora"
[2025-06-02 23:16:46] VERSION_ID="7"
[2025-06-02 23:16:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 23:16:46] ANSI_COLOR="0;31"
[2025-06-02 23:16:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 23:16:46] HOME_URL="https://www.centos.org/"
[2025-06-02 23:16:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 23:16:46] 
[2025-06-02 23:16:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 23:16:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 23:16:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 23:16:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 23:16:46] 
[2025-06-02 23:16:46] 2025-06-02 20:15:42,875 | INFO     | **************************************
[2025-06-02 23:16:46] 2025-06-02 20:15:43,379 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-02 23:16:46] 2025-06-02 20:15:43,552 | INFO     | sufficient remaining disk space (496497590272 B)
[2025-06-02 23:16:46] 2025-06-02 20:15:43,552 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 23:16:46] 2025-06-02 20:15:43,553 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 23:16:46] 2025-06-02 20:15:43,553 | INFO     | update_server=False
[2025-06-02 23:16:46] 2025-06-02 20:15:43,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 23:16:46] 2025-06-02 20:15:43,700 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-02 23:16:46] 2025-06-02 20:15:43,701 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-02 23:16:46] 2025-06-02 20:15:43,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 23:16:46] 2025-06-02 20:15:43,701 | INFO     | will abort loop
[2025-06-02 23:16:46] 2025-06-02 20:15:44,011 | INFO     | all payload control threads have been joined
[2025-06-02 23:16:46] 2025-06-02 20:15:44,133 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 23:16:46] 2025-06-02 20:15:44,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 23:16:46] 2025-06-02 20:15:44,134 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 23:16:46] 2025-06-02 20:15:44,326 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 23:16:46] 2025-06-02 20:15:44,364 | INFO     | all data control threads have been joined
[2025-06-02 23:16:46] 2025-06-02 20:15:44,531 | INFO     | all job control threads have been joined
[2025-06-02 23:16:46] 2025-06-02 20:15:44,558 | INFO     | [job] retrieve thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:44,707 | INFO     | [job] job monitor thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:44,804 | INFO     | [payload] validate_post thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:44,869 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 23:16:46] 2025-06-02 20:15:45,016 | INFO     | [data] copytool_in thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,017 | INFO     | [payload] control thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,370 | INFO     | [data] control thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,475 | INFO     | [job] validate thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,537 | INFO     | [job] control thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,821 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,841 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:45,981 | INFO     | [payload] failed_post thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:46,016 | INFO     | [job] queue monitor thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:46,028 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 23:16:46] 2025-06-02 20:15:46,333 | INFO     | [data] copytool_out thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:50,036 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 23:16:46] 2025-06-02 20:15:51,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140250897667904)>', '<ExcThread(monitor, started 140250437363456)>']
[2025-06-02 23:16:46] 2025-06-02 20:15:52,181 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 23:16:46] 2025-06-02 20:15:52,182 | INFO     | [monitor] control thread has ended
[2025-06-02 23:16:46] 2025-06-02 20:15:56,317 | INFO     | all workflow threads have been joined
[2025-06-02 23:16:46] 2025-06-02 20:15:56,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 23:16:46] 2025-06-02 20:15:56,318 | INFO     | traces error code: 0
[2025-06-02 23:16:46] 2025-06-02 20:15:56,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 23:16:46] 2025-06-02 20:15:56,639 [wrapper] ==== pilot stdout END ====
[2025-06-02 23:16:46] 2025-06-02 20:15:56,732 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 23:16:46] 2025-06-02 20:15:56,823 [wrapper] pilotpid: 8752
[2025-06-02 23:16:46] 2025-06-02 20:15:56,882 [wrapper] Pilot exit status: 0
[2025-06-02 23:16:46] 2025-06-02 20:15:57,344 [wrapper] pandaids: 6677379828
[2025-06-02 23:16:46] 2025-06-02 20:15:57,595 [wrapper] cleanup supervisor_pilot 25459 8753
[2025-06-02 23:16:46] 2025-06-02 20:15:57,635 [wrapper] Test setup, not cleaning
[2025-06-02 23:16:46] 2025-06-02 20:15:57,708 [wrapper] apfmon messages muted
[2025-06-02 23:16:46] 2025-06-02 20:15:57,762 [wrapper] ==== wrapper stdout END ====
[2025-06-02 23:16:46] 2025-06-02 20:15:57,841 [wrapper] ==== wrapper stderr END ====
[2025-06-02 23:16:46]  *** Error codes and diagnostics ***
[2025-06-02 23:16:46]     "exeErrorCode": 0,
[2025-06-02 23:16:46]     "exeErrorDiag": "",
[2025-06-02 23:16:46]     "pilotErrorCode": 0,
[2025-06-02 23:16:46]     "pilotErrorDiag": "",
[2025-06-02 23:16:46]  *** Listing of results directory ***
[2025-06-02 23:16:46] total 393532
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 23:16:46] -rwx------. 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:52 queuedata.json
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc       100 Jun  2 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 23:16:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 18:24 run_atlas
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc       105 Jun  2 18:24 job.xml
[2025-06-02 23:16:46] -rw-r--r--. 2 boinc boinc 214065004 Jun  2 18:24 EVNT.45006593._000076.pool.root.1
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc      6391 Jun  2 18:24 init_data.xml
[2025-06-02 23:16:46] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:24 start_atlas.sh
[2025-06-02 23:16:46] drwxrwx--x. 2 boinc boinc        68 Jun  2 18:24 shared
[2025-06-02 23:16:46] -rw-r--r--. 2 boinc boinc    508876 Jun  2 18:24 input.tar.gz
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc         0 Jun  2 18:24 boinc_lockfile
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc      2521 Jun  2 18:24 pandaJob.out
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc    988242 Jun  2 18:27 agis_schedconf.cvmfs.json
[2025-06-02 23:16:46] drwx------. 4 boinc boinc      4096 Jun  2 18:27 pilot3
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc 181990060 Jun  2 22:12 HITS.45006595._001886.pool.root.1
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc       531 Jun  2 22:12 boinc_task_state.xml
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc      1014 Jun  2 22:14 memory_monitor_summary.json
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc   1603667 Jun  2 22:14 agis_ddmendpoints.agis.ALL.json
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc    375510 Jun  2 22:14 log.45006595._001886.job.log.tgz.1
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc      7690 Jun  2 22:15 heartbeat.json
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc        95 Jun  2 22:15 pilot_heartbeat.json
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc      4602 Jun  2 22:15 pilotlog.txt
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc   1168761 Jun  2 22:15 log.45006595._001886.job.log.1
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc       357 Jun  2 22:15 output.list
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc       620 Jun  2 22:15 runtime_log
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc   1566720 Jun  2 22:15 result.tar.gz
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc      8659 Jun  2 22:15 runtime_log.err
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc       657 Jun  2 22:15 P9JLDmCcMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm9dVKDmPA7frn.diag
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc      8192 Jun  2 23:16 boinc_mmap_file
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc        28 Jun  2 23:16 wrapper_checkpoint.txt
[2025-06-02 23:16:46] -rw-r--r--. 1 boinc boinc     20496 Jun  2 23:16 stderr.txt
[2025-06-02 23:16:46] HITS file was successfully produced:
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc 181990060 Jun  2 22:12 shared/HITS.pool.root.1
[2025-06-02 23:16:46]  *** Contents of shared directory: ***
[2025-06-02 23:16:46] total 388824
[2025-06-02 23:16:46] -rw-r--r--. 2 boinc boinc 214065004 Jun  2 18:24 ATLAS.root_0
[2025-06-02 23:16:46] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:24 start_atlas.sh
[2025-06-02 23:16:46] -rw-r--r--. 2 boinc boinc    508876 Jun  2 18:24 input.tar.gz
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc 181990060 Jun  2 22:12 HITS.pool.root.1
[2025-06-02 23:16:46] -rw-------. 1 boinc boinc   1566720 Jun  2 22:15 result.tar.gz
23:16:48 (1444): run_atlas exited; CPU time 48883.867072
23:16:48 (1444): called boinc_finish(0)

</stderr_txt>
]]>

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