Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:48:43 (29188): wrapper (7.7.26015): starting
18:48:43 (29188): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 18:48:43] Arguments: --nthreads 8
[2025-06-02 18:48:43] Threads: 8
[2025-06-02 18:48:43] Checking for CVMFS
[2025-06-02 18:48:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 18:48:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 18:48:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 18:48:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 18:48:45] 2.11.2.0 2191 30576 92532 146713 2 16 22451973 25165824 4637 130560 0 15227987 99.781 18653712 2289 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 18:48:45] CVMFS is ok
[2025-06-02 18:48:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 18:48:45] Checking for apptainer binary...
[2025-06-02 18:48:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 18:48:45] Running /usr/bin/apptainer --version
[2025-06-02 18:48:45] apptainer version 1.3.2-1.el7
[2025-06-02 18:48:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:48:56] cg-vwn409.simple-grid.lan
[2025-06-02 18:48:56] apptainer works
[2025-06-02 18:48:57] Set ATHENA_PROC_NUMBER=8
[2025-06-02 18:48:57] Set ATHENA_CORE_NUMBER=8
[2025-06-02 18:48:57] Starting ATLAS job with PandaID=6677379066
[2025-06-02 18:48:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:54:49]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:54:49] 2025-06-02 20:39:58,966 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 22:54:49] 2025-06-02 20:39:58,966 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:54:49] 2025-06-02 20:39:58,966 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:54:49] 2025-06-02 20:39:58,966 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:54:49] 2025-06-02 20:39:58,976 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:54:49] 2025-06-02 20:39:58,977 | INFO     | sum of square deviations: 3038856977.5
[2025-06-02 22:54:49] 2025-06-02 20:39:58,979 | INFO     | sum of deviations: 87608037068.99998
[2025-06-02 22:54:49] 2025-06-02 20:39:58,979 | INFO     | mean x: 1748890155.5
[2025-06-02 22:54:49] 2025-06-02 20:39:58,979 | INFO     | mean y: 2412891.6542056073
[2025-06-02 22:54:49] 2025-06-02 20:39:58,979 | INFO     | -- intersect: -50416818650.69408
[2025-06-02 22:54:49] 2025-06-02 20:39:58,979 | INFO     | intersect: -50416818650.69408
[2025-06-02 22:54:49] 2025-06-02 20:39:58,980 | INFO     | chi2: 8.058155371102405
[2025-06-02 22:54:49] 2025-06-02 20:39:58,980 | INFO     | sum of square deviations: 2830787960.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,982 | INFO     | sum of deviations: 99443617396.00002
[2025-06-02 22:54:49] 2025-06-02 20:39:58,982 | INFO     | mean x: 1748890003.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,982 | INFO     | mean y: 2421370.038277512
[2025-06-02 22:54:49] 2025-06-02 20:39:58,982 | INFO     | -- intersect: -61434871279.04495
[2025-06-02 22:54:49] 2025-06-02 20:39:58,982 | INFO     | intersect: -61434871279.04495
[2025-06-02 22:54:49] 2025-06-02 20:39:58,983 | INFO     | chi2: 7.37123688482828
[2025-06-02 22:54:49] 2025-06-02 20:39:58,983 | INFO     | current chi2=7.37123688482828 (change=8.524512802737764 %)
[2025-06-02 22:54:49] 2025-06-02 20:39:58,983 | INFO     | right removable region: 208
[2025-06-02 22:54:49] 2025-06-02 20:39:58,983 | INFO     | sum of square deviations: 2830787960.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,985 | INFO     | sum of deviations: 13399714632.999992
[2025-06-02 22:54:49] 2025-06-02 20:39:58,985 | INFO     | mean x: 1748890308.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,985 | INFO     | mean y: 2467244.976076555
[2025-06-02 22:54:49] 2025-06-02 20:39:58,985 | INFO     | -- intersect: -8276016125.293545
[2025-06-02 22:54:49] 2025-06-02 20:39:58,985 | INFO     | intersect: -8276016125.293545
[2025-06-02 22:54:49] 2025-06-02 20:39:58,986 | INFO     | chi2: 2.9453914222355184
[2025-06-02 22:54:49] 2025-06-02 20:39:58,986 | INFO     | current chi2=2.9453914222355184 (change=63.44831680960043 %)
[2025-06-02 22:54:49] 2025-06-02 20:39:58,986 | INFO     | sum of square deviations: 2632440055.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,988 | INFO     | sum of deviations: -31857823400.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,988 | INFO     | mean x: 1748890460.5
[2025-06-02 22:54:49] 2025-06-02 20:39:58,988 | INFO     | mean y: 2501881.0588235296
[2025-06-02 22:54:49] 2025-06-02 20:39:58,988 | INFO     | -- intersect: 21167596725.565613
[2025-06-02 22:54:49] 2025-06-02 20:39:58,988 | INFO     | intersect: 21167596725.565613
[2025-06-02 22:54:49] 2025-06-02 20:39:58,989 | INFO     | chi2: 0.9654691541091579
[2025-06-02 22:54:49] 2025-06-02 20:39:58,989 | INFO     | current chi2=0.9654691541091579 (change=67.22102377223676 %)
[2025-06-02 22:54:49] 2025-06-02 20:39:58,989 | INFO     | sum of square deviations: 2443580700.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,991 | INFO     | sum of deviations: -33346913554.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,991 | INFO     | mean x: 1748890613.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,991 | INFO     | mean y: 2503009.2110552764
[2025-06-02 22:54:49] 2025-06-02 20:39:58,991 | INFO     | -- intersect: 23869160691.97679
[2025-06-02 22:54:49] 2025-06-02 20:39:58,991 | INFO     | intersect: 23869160691.97679
[2025-06-02 22:54:49] 2025-06-02 20:39:58,991 | INFO     | chi2: 0.9204235592514018
[2025-06-02 22:54:49] 2025-06-02 20:39:58,992 | INFO     | current chi2=0.9204235592514018 (change=4.665668982383989 %)
[2025-06-02 22:54:49] 2025-06-02 20:39:58,992 | INFO     | left removable region: 30
[2025-06-02 22:54:49] 2025-06-02 20:39:58,992 | INFO     | sum of square deviations: 1748737904.5
[2025-06-02 22:54:49] 2025-06-02 20:39:58,993 | INFO     | sum of deviations: 1407879695.0
[2025-06-02 22:54:49] 2025-06-02 20:39:58,994 | INFO     | mean x: 1748890887.5
[2025-06-02 22:54:49] 2025-06-02 20:39:58,994 | INFO     | mean y: 2494518.887640449
[2025-06-02 22:54:49] 2025-06-02 20:39:58,994 | INFO     | -- intersect: -1405508340.171894
[2025-06-02 22:54:49] 2025-06-02 20:39:58,994 | INFO     | intersect: -1405508340.171894
[2025-06-02 22:54:49] 2025-06-02 20:39:58,994 | INFO     | chi2: 0.013557463833081592
[2025-06-02 22:54:49] 2025-06-02 20:39:58,995 | INFO     | -- intersect: -1405508340.171894
[2025-06-02 22:54:49] 2025-06-02 20:39:58,995 | INFO     | current memory leak: 0.81 B/s (using 178 data points, chi2=0.01)
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | ..............................
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . Timing measurements:
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . get job = 0 s
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . initial setup = 11 s
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . payload setup = 187 s
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . stage-in = 0 s
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . payload execution = 13193 s
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . stage-out = 4 s
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | . log creation = 1 s
[2025-06-02 22:54:49] 2025-06-02 20:39:58,996 | INFO     | ..............................
[2025-06-02 22:54:49] 2025-06-02 20:39:59,122 | INFO     | 
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | job summary report
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | --------------------------------------------------
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | PanDA job id: 6677379066
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | task id: 45006595
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | errors: (none)
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | pilot state: finished 
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | transexitcode: 0
[2025-06-02 22:54:49] 2025-06-02 20:39:59,123 | INFO     | exeerrorcode: 0
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | exeerrordiag: 
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | exitcode: 0
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | exitmsg: OK
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | cpuconsumptiontime: 48543 s
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | nevents: 400
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | neventsw: 0
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | pid: 15214
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | pgrp: 15214
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | corecount: 8
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | event service: False
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | sizes: {0: 2405005, 1: 2405204, 12: 2405204, 23: 2405232, 34: 2405260, 44: 2405288, 55: 2405444, 66: 2405472, 77: 2405500, 87: 2405556, 95: 2405790, 98: 2406098, 1
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | --------------------------------------------------
[2025-06-02 22:54:49] 2025-06-02 20:39:59,124 | INFO     | 
[2025-06-02 22:54:49] 2025-06-02 20:39:59,125 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-02 22:54:49] 2025-06-02 20:39:59,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | job 6677379066 has completed (purged errors)
[2025-06-02 22:54:49] 2025-06-02 20:39:59,631 | INFO     | overall cleanup function is called
[2025-06-02 22:54:49] 2025-06-02 20:40:00,640 | INFO     | --- collectZombieJob: --- 10, [15214]
[2025-06-02 22:54:49] 2025-06-02 20:40:00,640 | INFO     | zombie collector waiting for pid 15214
[2025-06-02 22:54:49] 2025-06-02 20:40:00,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:54:49] 2025-06-02 20:40:00,640 | INFO     | collected zombie processes
[2025-06-02 22:54:49] 2025-06-02 20:40:00,640 | INFO     | will attempt to kill all subprocesses of pid=15214
[2025-06-02 22:54:49] 2025-06-02 20:40:00,761 | INFO     | process IDs to be killed: [15214] (in reverse order)
[2025-06-02 22:54:49] 2025-06-02 20:40:01,852 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:54:49] 2025-06-02 20:40:01,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:54:49] 2025-06-02 20:40:01,856 | INFO     | did not find any defunct processes belonging to 15214
[2025-06-02 22:54:49] 2025-06-02 20:40:01,859 | INFO     | did not find any defunct processes belonging to 15214
[2025-06-02 22:54:49] 2025-06-02 20:40:01,860 | INFO     | ready for new job
[2025-06-02 22:54:49] 2025-06-02 20:40:01,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:54:49] 2025-06-02 20:40:01,862 | INFO     | **************************************
[2025-06-02 22:54:49] 2025-06-02 20:40:01,862 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:54:49] 2025-06-02 20:40:01,862 | INFO     | **************************************
[2025-06-02 22:54:49] 2025-06-02 20:40:01,862 | INFO     | 
[2025-06-02 22:54:49] 2025-06-02 20:40:01,863 | INFO     | pilot is running in a VM
[2025-06-02 22:54:49] 2025-06-02 20:40:01,863 | INFO     | architecture information:
[2025-06-02 22:54:49] 2025-06-02 20:40:01,869 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:54:49] 2025-06-02 20:40:02,098 | INFO     | cat /etc/os-release:
[2025-06-02 22:54:49] NAME="CentOS Linux"
[2025-06-02 22:54:49] VERSION="7 (Core)"
[2025-06-02 22:54:49] ID="centos"
[2025-06-02 22:54:49] ID_LIKE="rhel fedora"
[2025-06-02 22:54:49] VERSION_ID="7"
[2025-06-02 22:54:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:54:49] ANSI_COLOR="0;31"
[2025-06-02 22:54:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:54:49] HOME_URL="https://www.centos.org/"
[2025-06-02 22:54:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:54:49] 
[2025-06-02 22:54:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:54:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:54:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:54:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:54:49] 
[2025-06-02 22:54:49] 2025-06-02 20:40:02,098 | INFO     | **************************************
[2025-06-02 22:54:49] 2025-06-02 20:40:02,602 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-02 22:54:49] 2025-06-02 20:40:02,828 | INFO     | sufficient remaining disk space (496581476352 B)
[2025-06-02 22:54:49] 2025-06-02 20:40:02,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:54:49] 2025-06-02 20:40:02,829 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:54:49] 2025-06-02 20:40:02,829 | INFO     | update_server=False
[2025-06-02 22:54:49] 2025-06-02 20:40:02,829 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:54:49] 2025-06-02 20:40:02,830 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:54:49] 2025-06-02 20:40:02,830 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:54:49] 2025-06-02 20:40:02,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:54:49] 2025-06-02 20:40:02,830 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:54:49] 2025-06-02 20:40:02,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:54:49] 2025-06-02 20:40:02,883 | INFO     | all data control threads have been joined
[2025-06-02 22:54:49] 2025-06-02 20:40:03,085 | INFO     | all job control threads have been joined
[2025-06-02 22:54:49] 2025-06-02 20:40:03,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:54:49] 2025-06-02 20:40:03,629 | INFO     | aborting loop
[2025-06-02 22:54:49] 2025-06-02 20:40:03,835 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:03,889 | INFO     | [data] control thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:03,947 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,091 | INFO     | [job] control thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:54:49] 2025-06-02 20:40:04,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:54:49] 2025-06-02 20:40:04,204 | INFO     | all payload control threads have been joined
[2025-06-02 22:54:49] 2025-06-02 20:40:04,277 | INFO     | [job] validate thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,335 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,383 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,635 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,674 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,816 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:04,993 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:05,146 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:05,210 | INFO     | [payload] control thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:06,198 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:06,841 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:13,371 | INFO     | job.realtimelogging is not enabled
[2025-06-02 22:54:49] 2025-06-02 20:40:14,377 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:54:49] 2025-06-02 20:40:16,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859423950656)>', '<ExcThread(monitor, started 139858739709696)>']
[2025-06-02 22:54:49] 2025-06-02 20:40:16,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:54:49] 2025-06-02 20:40:16,914 | INFO     | [monitor] control thread has ended
[2025-06-02 22:54:49] 2025-06-02 20:40:21,387 | INFO     | all workflow threads have been joined
[2025-06-02 22:54:49] 2025-06-02 20:40:21,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:54:49] 2025-06-02 20:40:21,387 | INFO     | traces error code: 0
[2025-06-02 22:54:49] 2025-06-02 20:40:21,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:54:49] 2025-06-02 20:40:21,776 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:54:49] 2025-06-02 20:40:21,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:54:49] 2025-06-02 20:40:21,948 [wrapper] pilotpid: 6578
[2025-06-02 22:54:49] 2025-06-02 20:40:21,996 [wrapper] Pilot exit status: 0
[2025-06-02 22:54:49] 2025-06-02 20:40:22,351 [wrapper] pandaids: 6677379066
[2025-06-02 22:54:49] 2025-06-02 20:40:22,768 [wrapper] cleanup supervisor_pilot 24837 6579
[2025-06-02 22:54:49] 2025-06-02 20:40:22,815 [wrapper] Test setup, not cleaning
[2025-06-02 22:54:49] 2025-06-02 20:40:22,860 [wrapper] apfmon messages muted
[2025-06-02 22:54:49] 2025-06-02 20:40:22,901 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:54:49] 2025-06-02 20:40:22,939 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:54:49]  *** Error codes and diagnostics ***
[2025-06-02 22:54:49]     "exeErrorCode": 0,
[2025-06-02 22:54:49]     "exeErrorDiag": "",
[2025-06-02 22:54:49]     "pilotErrorCode": 0,
[2025-06-02 22:54:49]     "pilotErrorDiag": "",
[2025-06-02 22:54:49]  *** Listing of results directory ***
[2025-06-02 22:54:49] total 390548
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-02 22:54:49] -rwx------. 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc       100 Jun  2 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:54:49] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 18:48 run_atlas
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc       105 Jun  2 18:48 job.xml
[2025-06-02 22:54:49] -rw-r--r--. 2 boinc boinc 214147514 Jun  2 18:48 EVNT.45006593._000060.pool.root.1
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc      6392 Jun  2 18:48 init_data.xml
[2025-06-02 22:54:49] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:48 start_atlas.sh
[2025-06-02 22:54:49] drwxrwx--x. 2 boinc boinc        68 Jun  2 18:48 shared
[2025-06-02 22:54:49] -rw-r--r--. 2 boinc boinc    508869 Jun  2 18:48 input.tar.gz
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc         0 Jun  2 18:48 boinc_lockfile
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc      2521 Jun  2 18:48 pandaJob.out
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc    988298 Jun  2 18:52 agis_schedconf.cvmfs.json
[2025-06-02 22:54:49] drwx------. 4 boinc boinc      4096 Jun  2 18:52 pilot3
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc 178853637 Jun  2 22:36 HITS.45006595._001486.pool.root.1
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc       531 Jun  2 22:37 boinc_task_state.xml
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc      1017 Jun  2 22:38 memory_monitor_summary.json
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc   1603667 Jun  2 22:38 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc    375745 Jun  2 22:38 log.45006595._001486.job.log.tgz.1
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc        95 Jun  2 22:39 pilot_heartbeat.json
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc      7687 Jun  2 22:39 heartbeat.json
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc      4611 Jun  2 22:40 pilotlog.txt
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc   1168676 Jun  2 22:40 log.45006595._001486.job.log.1
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc       357 Jun  2 22:40 output.list
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc       620 Jun  2 22:40 runtime_log
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc   1566720 Jun  2 22:40 result.tar.gz
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc      8659 Jun  2 22:40 runtime_log.err
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc       657 Jun  2 22:40 80xNDmubMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGcVKDm4gtM8n.diag
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:54 boinc_mmap_file
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:54 wrapper_checkpoint.txt
[2025-06-02 22:54:49] -rw-r--r--. 1 boinc boinc     20496 Jun  2 22:54 stderr.txt
[2025-06-02 22:54:49] HITS file was successfully produced:
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc 178853637 Jun  2 22:36 shared/HITS.pool.root.1
[2025-06-02 22:54:49]  *** Contents of shared directory: ***
[2025-06-02 22:54:49] total 385844
[2025-06-02 22:54:49] -rw-r--r--. 2 boinc boinc 214147514 Jun  2 18:48 ATLAS.root_0
[2025-06-02 22:54:49] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:48 start_atlas.sh
[2025-06-02 22:54:49] -rw-r--r--. 2 boinc boinc    508869 Jun  2 18:48 input.tar.gz
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc 178853637 Jun  2 22:36 HITS.pool.root.1
[2025-06-02 22:54:49] -rw-------. 1 boinc boinc   1566720 Jun  2 22:40 result.tar.gz
22:54:51 (29188): run_atlas exited; CPU time 48719.680638
22:54:51 (29188): called boinc_finish(0)

</stderr_txt>
]]>

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