Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:13:44 (3253): wrapper (7.7.26015): starting
02:13:44 (3253): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 02:13:44] Arguments: --nthreads 8
[2025-06-03 02:13:44] Threads: 8
[2025-06-03 02:13:44] Checking for CVMFS
[2025-06-03 02:13:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 02:13:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 02:13:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 02:13:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 02:13:47] 2.11.2.0 24500 31200 94224 146723 3 114 13601479 25165825 4353 130560 0 14872902 99.809 17873512 4338 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 02:13:47] CVMFS is ok
[2025-06-03 02:13:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 02:13:47] Checking for apptainer binary...
[2025-06-03 02:13:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 02:13:47] Running /usr/bin/apptainer --version
[2025-06-03 02:13:47] apptainer version 1.3.2-1.el7
[2025-06-03 02:13:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 02:13:49] cg-vwn232.simple-grid.lan
[2025-06-03 02:13:49] apptainer works
[2025-06-03 02:13:49] Set ATHENA_PROC_NUMBER=8
[2025-06-03 02:13:49] Set ATHENA_CORE_NUMBER=8
[2025-06-03 02:13:49] Starting ATLAS job with PandaID=6677378262
[2025-06-03 02:13:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 06:03:58]  *** The last 200 lines of the pilot log: ***
[2025-06-03 06:03:58] 2025-06-03 03:52:40,324 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6677378262/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,324 | INFO     | extracted standard info from prmon json
[2025-06-03 06:03:58] 2025-06-03 03:52:40,324 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 06:03:58] 2025-06-03 03:52:40,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 06:03:58] 2025-06-03 03:52:40,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 06:03:58] 2025-06-03 03:52:40,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 06:03:58] 2025-06-03 03:52:40,330 | INFO     | fitting pss+swap vs Time
[2025-06-03 06:03:58] 2025-06-03 03:52:40,330 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,335 | INFO     | sum of deviations: -54068108291.00001
[2025-06-03 06:03:58] 2025-06-03 03:52:40,335 | INFO     | mean x: 1748916187.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,336 | INFO     | mean y: 2605879.784037559
[2025-06-03 06:03:58] 2025-06-03 03:52:40,336 | INFO     | -- intersect: 31560100047.585613
[2025-06-03 06:03:58] 2025-06-03 03:52:40,336 | INFO     | intersect: 31560100047.585613
[2025-06-03 06:03:58] 2025-06-03 03:52:40,336 | INFO     | chi2: 2.842587147501784
[2025-06-03 06:03:58] 2025-06-03 03:52:40,337 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,338 | INFO     | sum of deviations: -36267071149.99999
[2025-06-03 06:03:58] 2025-06-03 03:52:40,338 | INFO     | mean x: 1748916034.5
[2025-06-03 06:03:58] 2025-06-03 03:52:40,338 | INFO     | mean y: 2618852.673076923
[2025-06-03 06:03:58] 2025-06-03 03:52:40,339 | INFO     | -- intersect: 22733854977.36583
[2025-06-03 06:03:58] 2025-06-03 03:52:40,339 | INFO     | intersect: 22733854977.36583
[2025-06-03 06:03:58] 2025-06-03 03:52:40,339 | INFO     | chi2: 2.076731459355502
[2025-06-03 06:03:58] 2025-06-03 03:52:40,339 | INFO     | current chi2=2.076731459355502 (change=26.94220611035114 %)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,340 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,341 | INFO     | sum of deviations: -32836177756.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,341 | INFO     | mean x: 1748915882.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,342 | INFO     | mean y: 2621516.7586206896
[2025-06-03 06:03:58] 2025-06-03 03:52:40,342 | INFO     | -- intersect: 22142004897.75389
[2025-06-03 06:03:58] 2025-06-03 03:52:40,342 | INFO     | intersect: 22142004897.75389
[2025-06-03 06:03:58] 2025-06-03 03:52:40,342 | INFO     | chi2: 2.0779602777487116
[2025-06-03 06:03:58] 2025-06-03 03:52:40,342 | INFO     | current chi2=2.0779602777487116 (change=-0.05917078915878629 %)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,342 | INFO     | right removable region: 202
[2025-06-03 06:03:58] 2025-06-03 03:52:40,343 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,345 | INFO     | sum of deviations: -95429293436.5
[2025-06-03 06:03:58] 2025-06-03 03:52:40,345 | INFO     | mean x: 1748916339.5
[2025-06-03 06:03:58] 2025-06-03 03:52:40,345 | INFO     | mean y: 2636240.2259615385
[2025-06-03 06:03:58] 2025-06-03 03:52:40,345 | INFO     | -- intersect: 59815191040.83783
[2025-06-03 06:03:58] 2025-06-03 03:52:40,345 | INFO     | intersect: 59815191040.83783
[2025-06-03 06:03:58] 2025-06-03 03:52:40,346 | INFO     | chi2: 1.013084188802284
[2025-06-03 06:03:58] 2025-06-03 03:52:40,346 | INFO     | current chi2=1.013084188802284 (change=64.36048795574708 %)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,346 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,348 | INFO     | sum of deviations: -97006738156.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,348 | INFO     | mean x: 1748916492.0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,348 | INFO     | mean y: 2637423.379310345
[2025-06-03 06:03:58] 2025-06-03 03:52:40,348 | INFO     | -- intersect: 65408243752.310326
[2025-06-03 06:03:58] 2025-06-03 03:52:40,348 | INFO     | intersect: 65408243752.310326
[2025-06-03 06:03:58] 2025-06-03 03:52:40,349 | INFO     | chi2: 0.9602592935584877
[2025-06-03 06:03:58] 2025-06-03 03:52:40,349 | INFO     | current chi2=0.9602592935584877 (change=5.214265095406166 %)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,349 | INFO     | left removable region: 20
[2025-06-03 06:03:58] 2025-06-03 03:52:40,349 | INFO     | sum of square deviations: 1869302025.5
[2025-06-03 06:03:58] 2025-06-03 03:52:40,354 | INFO     | sum of deviations: -68636076502.00001
[2025-06-03 06:03:58] 2025-06-03 03:52:40,354 | INFO     | mean x: 1748916461.5
[2025-06-03 06:03:58] 2025-06-03 03:52:40,354 | INFO     | mean y: 2651265.956043956
[2025-06-03 06:03:58] 2025-06-03 03:52:40,354 | INFO     | -- intersect: 64218472149.69646
[2025-06-03 06:03:58] 2025-06-03 03:52:40,355 | INFO     | intersect: 64218472149.69646
[2025-06-03 06:03:58] 2025-06-03 03:52:40,355 | INFO     | chi2: 0.14999261411780798
[2025-06-03 06:03:58] 2025-06-03 03:52:40,355 | INFO     | -- intersect: 64218472149.69646
[2025-06-03 06:03:58] 2025-06-03 03:52:40,355 | INFO     | current memory leak: -36.72 B/s (using 182 data points, chi2=0.15)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,356 | INFO     | ..............................
[2025-06-03 06:03:58] 2025-06-03 03:52:40,356 | INFO     | . Timing measurements:
[2025-06-03 06:03:58] 2025-06-03 03:52:40,356 | INFO     | . get job = 0 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,356 | INFO     | . initial setup = 2 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,356 | INFO     | . payload setup = 14 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,356 | INFO     | . stage-in = 0 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,356 | INFO     | . payload execution = 12980 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,357 | INFO     | . stage-out = 1 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,357 | INFO     | . log creation = 0 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,357 | INFO     | ..............................
[2025-06-03 06:03:58] 2025-06-03 03:52:40,515 | INFO     | 
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | job summary report
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | --------------------------------------------------
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | PanDA job id: 6677378262
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | task id: 45006595
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | errors: (none)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | pilot state: finished 
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | transexitcode: 0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,516 | INFO     | exeerrorcode: 0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | exeerrordiag: 
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | exitcode: 0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | exitmsg: OK
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | cpuconsumptiontime: 49225 s
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | nevents: 400
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | neventsw: 0
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | pid: 17451
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | pgrp: 17451
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | corecount: 8
[2025-06-03 06:03:58] 2025-06-03 03:52:40,517 | INFO     | event service: False
[2025-06-03 06:03:58] 2025-06-03 03:52:40,518 | INFO     | sizes: {0: 2405172, 1: 2405200, 12: 2405200, 16: 2405434, 23: 2405462, 12998: 2435107, 13000: 2444048, 13001: 2444104, 13077: 2444274}
[2025-06-03 06:03:58] 2025-06-03 03:52:40,518 | INFO     | --------------------------------------------------
[2025-06-03 06:03:58] 2025-06-03 03:52:40,518 | INFO     | 
[2025-06-03 06:03:58] 2025-06-03 03:52:40,518 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 06:03:58] 2025-06-03 03:52:40,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,905 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,905 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,905 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,905 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 06:03:58] 2025-06-03 03:52:40,907 | INFO     | job 6677378262 has completed (purged errors)
[2025-06-03 06:03:58] 2025-06-03 03:52:40,907 | INFO     | overall cleanup function is called
[2025-06-03 06:03:58] 2025-06-03 03:52:41,916 | INFO     | --- collectZombieJob: --- 10, [17451]
[2025-06-03 06:03:58] 2025-06-03 03:52:41,917 | INFO     | zombie collector waiting for pid 17451
[2025-06-03 06:03:58] 2025-06-03 03:52:41,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 06:03:58] 2025-06-03 03:52:41,917 | INFO     | collected zombie processes
[2025-06-03 06:03:58] 2025-06-03 03:52:41,917 | INFO     | will attempt to kill all subprocesses of pid=17451
[2025-06-03 06:03:58] 2025-06-03 03:52:42,043 | INFO     | process IDs to be killed: [17451] (in reverse order)
[2025-06-03 06:03:58] 2025-06-03 03:52:42,654 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 06:03:58] 2025-06-03 03:52:42,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 06:03:58] 2025-06-03 03:52:42,658 | INFO     | did not find any defunct processes belonging to 17451
[2025-06-03 06:03:58] 2025-06-03 03:52:42,661 | INFO     | did not find any defunct processes belonging to 17451
[2025-06-03 06:03:58] 2025-06-03 03:52:42,661 | INFO     | ready for new job
[2025-06-03 06:03:58] 2025-06-03 03:52:42,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 06:03:58] 2025-06-03 03:52:42,663 | INFO     | **************************************
[2025-06-03 06:03:58] 2025-06-03 03:52:42,663 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 06:03:58] 2025-06-03 03:52:42,663 | INFO     | **************************************
[2025-06-03 06:03:58] 2025-06-03 03:52:42,663 | INFO     | 
[2025-06-03 06:03:58] 2025-06-03 03:52:42,664 | INFO     | pilot is running in a VM
[2025-06-03 06:03:58] 2025-06-03 03:52:42,664 | INFO     | architecture information:
[2025-06-03 06:03:58] 2025-06-03 03:52:42,667 | INFO     | executing command: cat /etc/os-release
[2025-06-03 06:03:58] 2025-06-03 03:52:42,844 | INFO     | cat /etc/os-release:
[2025-06-03 06:03:58] NAME="CentOS Linux"
[2025-06-03 06:03:58] VERSION="7 (Core)"
[2025-06-03 06:03:58] ID="centos"
[2025-06-03 06:03:58] ID_LIKE="rhel fedora"
[2025-06-03 06:03:58] VERSION_ID="7"
[2025-06-03 06:03:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 06:03:58] ANSI_COLOR="0;31"
[2025-06-03 06:03:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 06:03:58] HOME_URL="https://www.centos.org/"
[2025-06-03 06:03:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 06:03:58] 
[2025-06-03 06:03:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 06:03:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 06:03:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 06:03:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 06:03:58] 
[2025-06-03 06:03:58] 2025-06-03 03:52:42,844 | INFO     | **************************************
[2025-06-03 06:03:58] 2025-06-03 03:52:43,348 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 06:03:58] 2025-06-03 03:52:43,449 | INFO     | sufficient remaining disk space (496860397568 B)
[2025-06-03 06:03:58] 2025-06-03 03:52:43,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 06:03:58] 2025-06-03 03:52:43,450 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 06:03:58] 2025-06-03 03:52:43,450 | INFO     | update_server=False
[2025-06-03 06:03:58] 2025-06-03 03:52:43,450 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 06:03:58] 2025-06-03 03:52:43,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 06:03:58] 2025-06-03 03:52:43,528 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 06:03:58] 2025-06-03 03:52:43,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 06:03:58] 2025-06-03 03:52:43,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 06:03:58] 2025-06-03 03:52:43,719 | INFO     | all data control threads have been joined
[2025-06-03 06:03:58] 2025-06-03 03:52:44,225 | INFO     | all payload control threads have been joined
[2025-06-03 06:03:58] 2025-06-03 03:52:44,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 06:03:58] 2025-06-03 03:52:44,441 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 06:03:58] 2025-06-03 03:52:44,442 | INFO     | aborting loop
[2025-06-03 06:03:58] 2025-06-03 03:52:44,455 | INFO     | [job] retrieve thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:44,725 | INFO     | [data] control thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:44,726 | INFO     | [job] validate thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:44,814 | INFO     | [payload] failed_post thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,017 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,159 | INFO     | all job control threads have been joined
[2025-06-03 06:03:58] 2025-06-03 03:52:45,231 | INFO     | [payload] control thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,447 | INFO     | [job] job monitor thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 06:03:58] 2025-06-03 03:52:45,559 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,563 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,754 | INFO     | [data] copytool_in thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:45,919 | INFO     | [payload] validate_post thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:46,165 | INFO     | [job] control thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:46,236 | INFO     | [data] copytool_out thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:46,536 | INFO     | [job] queue monitor thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:47,461 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 06:03:58] 2025-06-03 03:52:49,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273777407808)>', '<ExcThread(monitor, started 140273346664192)>']
[2025-06-03 06:03:58] 2025-06-03 03:52:49,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 06:03:58] 2025-06-03 03:52:49,565 | INFO     | [monitor] control thread has ended
[2025-06-03 06:03:58] 2025-06-03 03:52:54,222 | INFO     | all workflow threads have been joined
[2025-06-03 06:03:58] 2025-06-03 03:52:54,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 06:03:58] 2025-06-03 03:52:54,223 | INFO     | traces error code: 0
[2025-06-03 06:03:58] 2025-06-03 03:52:54,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 06:03:58] 2025-06-03 03:52:54,470 [wrapper] ==== pilot stdout END ====
[2025-06-03 06:03:58] 2025-06-03 03:52:54,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 06:03:58] 2025-06-03 03:52:54,682 [wrapper] pilotpid: 6937
[2025-06-03 06:03:58] 2025-06-03 03:52:54,769 [wrapper] Pilot exit status: 0
[2025-06-03 06:03:58] 2025-06-03 03:52:55,119 [wrapper] pandaids: 6677378262
[2025-06-03 06:03:58] 2025-06-03 03:52:55,450 [wrapper] cleanup supervisor_pilot  2246 6938
[2025-06-03 06:03:58] 2025-06-03 03:52:55,565 [wrapper] Test setup, not cleaning
[2025-06-03 06:03:58] 2025-06-03 03:52:55,684 [wrapper] apfmon messages muted
[2025-06-03 06:03:58] 2025-06-03 03:52:55,773 [wrapper] ==== wrapper stdout END ====
[2025-06-03 06:03:58] 2025-06-03 03:52:55,816 [wrapper] ==== wrapper stderr END ====
[2025-06-03 06:03:58]  *** Error codes and diagnostics ***
[2025-06-03 06:03:58]     "exeErrorCode": 0,
[2025-06-03 06:03:58]     "exeErrorDiag": "",
[2025-06-03 06:03:58]     "pilotErrorCode": 0,
[2025-06-03 06:03:58]     "pilotErrorDiag": "",
[2025-06-03 06:03:58]  *** Listing of results directory ***
[2025-06-03 06:03:58] total 386824
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 06:03:58] -rwx------. 1 boinc boinc     37140 Jun  2 17:49 runpilot2-wrapper.sh
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc       100 Jun  3 02:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 06:03:58] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 02:13 run_atlas
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc       105 Jun  3 02:13 job.xml
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc      6392 Jun  3 02:13 init_data.xml
[2025-06-03 06:03:58] -rw-r--r--. 2 boinc boinc 213306537 Jun  3 02:13 EVNT.45006593._000040.pool.root.1
[2025-06-03 06:03:58] -rw-r--r--. 2 boinc boinc     15093 Jun  3 02:13 start_atlas.sh
[2025-06-03 06:03:58] drwxrwx--x. 2 boinc boinc        68 Jun  3 02:13 shared
[2025-06-03 06:03:58] -rw-r--r--. 2 boinc boinc    508873 Jun  3 02:13 input.tar.gz
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc         0 Jun  3 02:13 boinc_lockfile
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc      2519 Jun  3 02:13 pandaJob.out
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc    988081 Jun  3 02:14 agis_schedconf.cvmfs.json
[2025-06-03 06:03:58] drwx------. 4 boinc boinc      4096 Jun  3 02:14 pilot3
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc 175961267 Jun  3 05:50 HITS.45006595._000983.pool.root.1
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:50 boinc_task_state.xml
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc      1021 Jun  3 05:51 memory_monitor_summary.json
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc   1603667 Jun  3 05:51 agis_ddmendpoints.agis.ALL.json
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc    368303 Jun  3 05:51 log.45006595._000983.job.log.tgz.1
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc        95 Jun  3 05:52 pilot_heartbeat.json
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc      7688 Jun  3 05:52 heartbeat.json
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc      4416 Jun  3 05:52 pilotlog.txt
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc   1139743 Jun  3 05:52 log.45006595._000983.job.log.1
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc       357 Jun  3 05:52 output.list
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:52 runtime_log
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc   1525760 Jun  3 05:52 result.tar.gz
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc      8659 Jun  3 05:52 runtime_log.err
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc       656 Jun  3 05:52 IRPNDm6aMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj3eKDmUoCwdn.diag
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc      8192 Jun  3 06:03 boinc_mmap_file
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc        28 Jun  3 06:03 wrapper_checkpoint.txt
[2025-06-03 06:03:58] -rw-r--r--. 1 boinc boinc     20487 Jun  3 06:03 stderr.txt
[2025-06-03 06:03:58] HITS file was successfully produced:
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc 175961267 Jun  3 05:50 shared/HITS.pool.root.1
[2025-06-03 06:03:58]  *** Contents of shared directory: ***
[2025-06-03 06:03:58] total 382156
[2025-06-03 06:03:58] -rw-r--r--. 2 boinc boinc 213306537 Jun  3 02:13 ATLAS.root_0
[2025-06-03 06:03:58] -rw-r--r--. 2 boinc boinc     15093 Jun  3 02:13 start_atlas.sh
[2025-06-03 06:03:58] -rw-r--r--. 2 boinc boinc    508873 Jun  3 02:13 input.tar.gz
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc 175961267 Jun  3 05:50 HITS.pool.root.1
[2025-06-03 06:03:58] -rw-------. 1 boinc boinc   1525760 Jun  3 05:52 result.tar.gz
06:04:00 (3253): run_atlas exited; CPU time 49384.930696
06:04:00 (3253): called boinc_finish(0)

</stderr_txt>
]]>

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