Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:16:03 (157106): wrapper (7.7.26015): starting
17:16:03 (157106): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 17:16:03] Arguments: --nthreads 4
[2025-06-06 17:16:03] Threads: 4
[2025-06-06 17:16:03] Checking for CVMFS
[2025-06-06 17:16:03] No cvmfs_config command found, will try listing directly
[2025-06-06 17:16:03] CVMFS is ok
[2025-06-06 17:16:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 17:16:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 17:16:03] Further information can be found at the LHC@home message board.
[2025-06-06 17:16:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 17:16:03] Checking for apptainer binary...
[2025-06-06 17:16:03] which: no apptainer in ((null))
[2025-06-06 17:16:03] apptainer is not installed, using version from CVMFS
[2025-06-06 17:16:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 17:16:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-06-06 17:16:03] apptainer works
[2025-06-06 17:16:03] Set ATHENA_PROC_NUMBER=4
[2025-06-06 17:16:03] Set ATHENA_CORE_NUMBER=4
[2025-06-06 17:16:03] Starting ATLAS job with PandaID=6677378685
[2025-06-06 17:16:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 18:46:16]  *** The last 200 lines of the pilot log: ***
[2025-06-06 18:46:16] 2025-06-06 16:45:47,368 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677378685/log.45006595._001392.job.log.tgz.1 /scratch/boinc/var/slot36/slots/0/lo
[2025-06-06 18:46:16] 2025-06-06 16:45:47,382 | INFO     | adding to output.list: log.45006595._001392.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/f8/log.45006595._001392.job.log.tg
[2025-06-06 18:46:16] 2025-06-06 16:45:47,382 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 18:46:16] 2025-06-06 16:45:47,383 | INFO     | summary of transferred files:
[2025-06-06 18:46:16] 2025-06-06 16:45:47,383 | INFO     |  -- lfn=log.45006595._001392.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 18:46:16] 2025-06-06 16:45:47,383 | INFO     | stage-out finished correctly
[2025-06-06 18:46:16] 2025-06-06 16:45:47,489 | WARNING  | process 167794 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 18:46:16] 2025-06-06 16:45:47,489 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677378685/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 18:46:16] 2025-06-06 16:45:47,490 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677378685/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 18:46:16] 2025-06-06 16:45:47,491 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2477704 B
[2025-06-06 18:46:16] 2025-06-06 16:45:47,491 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15803 B
[2025-06-06 18:46:16] 2025-06-06 16:45:47,491 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-06-06 18:46:16] 2025-06-06 16:45:47,501 | INFO     | sufficient remaining disk space (707084156928 B)
[2025-06-06 18:46:16] 2025-06-06 16:45:47,501 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 18:46:16] 2025-06-06 16:45:47,502 | INFO     | size of work directory /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677378685: 2780714 B (within 2537553920 B limit)
[2025-06-06 18:46:16] 2025-06-06 16:45:47,502 | INFO     | pfn file=/scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677378685/HITS.45006595._001392.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 18:46:16] 2025-06-06 16:45:47,502 | INFO     | total size of present files: 0 B (workdir size: 2780714 B)
[2025-06-06 18:46:16] 2025-06-06 16:45:47,502 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677378685/HITS.45006595._001392.pool.root.1 since it does not exist
[2025-06-06 18:46:16] 2025-06-06 16:45:47,632 | INFO     | number of running child processes to parent process 167794: 1
[2025-06-06 18:46:16] 2025-06-06 16:45:47,632 | INFO     | maximum number of monitored processes: 6
[2025-06-06 18:46:16] 2025-06-06 16:45:48,554 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 18:46:16] 2025-06-06 16:45:50,135 | INFO     | monitor loop #407: job 0:6677378685 is in state 'finished'
[2025-06-06 18:46:16] 2025-06-06 16:45:50,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:46:16] 2025-06-06 16:45:51,384 | INFO     | job 6677378685 has state=finished
[2025-06-06 18:46:16] 2025-06-06 16:45:51,384 | INFO     | preparing for final server update for job 6677378685 in state='finished'
[2025-06-06 18:46:16] 2025-06-06 16:45:51,384 | INFO     | this job has now completed (state=finished)
[2025-06-06 18:46:16] 2025-06-06 16:45:51,384 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 18:46:16] 2025-06-06 16:45:51,384 | INFO     | log transfer has been attempted: DONE
[2025-06-06 18:46:16] 2025-06-06 16:45:51,384 | INFO     | job 6677378685 has finished - writing final server update
[2025-06-06 18:46:16] 2025-06-06 16:45:51,385 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3931462/.job.ad'
[2025-06-06 18:46:16] 2025-06-06 16:45:51,385 | INFO     | total number of processed events: 400 (read)
[2025-06-06 18:46:16] 2025-06-06 16:45:51,387 | INFO     | executing command: lscpu
[2025-06-06 18:46:16] 2025-06-06 16:45:51,425 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 18:46:16] 2025-06-06 16:45:52,638 | INFO     | monitor loop #408: job 0:6677378685 is in state 'finished'
[2025-06-06 18:46:16] 2025-06-06 16:45:52,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:46:16] 2025-06-06 16:45:55,141 | INFO     | monitor loop #409: job 0:6677378685 is in state 'finished'
[2025-06-06 18:46:16] 2025-06-06 16:45:55,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:46:16] 2025-06-06 16:45:55,928 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 18:46:16] 2025-06-06 16:45:55,929 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677378685/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 18:46:16] 2025-06-06 16:45:55,929 | INFO     | extracted standard info from prmon json
[2025-06-06 18:46:16] 2025-06-06 16:45:55,929 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 18:46:16] 2025-06-06 16:45:55,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 18:46:16] 2025-06-06 16:45:55,930 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 18:46:16] 2025-06-06 16:45:55,930 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 18:46:16] 2025-06-06 16:45:55,931 | INFO     | fitting pss+swap vs Time
[2025-06-06 18:46:16] 2025-06-06 16:45:55,931 | INFO     | sum of square deviations: 164765880.0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | sum of deviations: -16811644347.0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | mean x: 1749225736.0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | mean y: 2625129.703703704
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | -- intersect: 178482301603.08105
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | intersect: 178482301603.08105
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | chi2: 0.16441295847830575
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | -- intersect: 178482301603.08105
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | current memory leak: -102.03 B/s (using 81 data points, chi2=0.16)
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | ..............................
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | . Timing measurements:
[2025-06-06 18:46:16] 2025-06-06 16:45:55,932 | INFO     | . get job = 0 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,933 | INFO     | . initial setup = 1 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,933 | INFO     | . payload setup = 4 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,933 | INFO     | . stage-in = 0 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,933 | INFO     | . payload execution = 5354 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,933 | INFO     | . stage-out = 0 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,933 | INFO     | . log creation = 0 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,933 | INFO     | ..............................
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | 
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | job summary report
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | --------------------------------------------------
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | PanDA job id: 6677378685
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | task id: 45006595
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | errors: (none)
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | pilot state: finished 
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | transexitcode: 0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | exeerrorcode: 0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | exeerrordiag: 
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | exitcode: 0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | exitmsg: OK
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | cpuconsumptiontime: 20638 s
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | nevents: 400
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | neventsw: 0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | pid: 167794
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | pgrp: 167794
[2025-06-06 18:46:16] 2025-06-06 16:45:55,980 | INFO     | corecount: 4
[2025-06-06 18:46:16] 2025-06-06 16:45:55,981 | INFO     | event service: False
[2025-06-06 18:46:16] 2025-06-06 16:45:55,981 | INFO     | sizes: {0: 2397345, 3: 2397551, 11: 2397579, 5362: 2424075, 5364: 2433038, 5365: 2433122, 5372: 2433420}
[2025-06-06 18:46:16] 2025-06-06 16:45:55,981 | INFO     | --------------------------------------------------
[2025-06-06 18:46:16] 2025-06-06 16:45:55,981 | INFO     | 
[2025-06-06 18:46:16] 2025-06-06 16:45:55,981 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-06-06 18:46:16] 2025-06-06 16:45:55,993 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | job 6677378685 has completed (purged errors)
[2025-06-06 18:46:16] 2025-06-06 16:45:55,995 | INFO     | overall cleanup function is called
[2025-06-06 18:46:16] 2025-06-06 16:45:56,375 | INFO     | PID=160804 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-06 18:46:16] 2025-06-06 16:45:56,375 | INFO     | .. there are 2 such processes running
[2025-06-06 18:46:16] 2025-06-06 16:45:57,002 | INFO     | --- collectZombieJob: --- 10, [167794]
[2025-06-06 18:46:16] 2025-06-06 16:45:57,002 | INFO     | zombie collector waiting for pid 167794
[2025-06-06 18:46:16] 2025-06-06 16:45:57,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 18:46:16] 2025-06-06 16:45:57,002 | INFO     | collected zombie processes
[2025-06-06 18:46:16] 2025-06-06 16:45:57,002 | INFO     | will attempt to kill all subprocesses of pid=167794
[2025-06-06 18:46:16] 2025-06-06 16:45:57,132 | INFO     | process IDs to be killed: [167794] (in reverse order)
[2025-06-06 18:46:16] 2025-06-06 16:45:57,186 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 18:46:16] 2025-06-06 16:45:57,187 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 18:46:16] 2025-06-06 16:45:57,191 | INFO     | did not find any defunct processes belonging to 167794
[2025-06-06 18:46:16] 2025-06-06 16:45:57,195 | INFO     | did not find any defunct processes belonging to 167794
[2025-06-06 18:46:16] 2025-06-06 16:45:57,196 | INFO     | ready for new job
[2025-06-06 18:46:16] 2025-06-06 16:45:57,196 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 18:46:16] 2025-06-06 16:45:57,197 | INFO     | **************************************
[2025-06-06 18:46:16] 2025-06-06 16:45:57,197 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 18:46:16] 2025-06-06 16:45:57,197 | INFO     | **************************************
[2025-06-06 18:46:16] 2025-06-06 16:45:57,197 | INFO     | 
[2025-06-06 18:46:16] 2025-06-06 16:45:57,199 | INFO     | architecture information:
[2025-06-06 18:46:16] 2025-06-06 16:45:57,199 | INFO     | executing command: cat /etc/os-release
[2025-06-06 18:46:16] 2025-06-06 16:45:57,210 | INFO     | cat /etc/os-release:
[2025-06-06 18:46:16] NAME="CentOS Linux"
[2025-06-06 18:46:16] VERSION="7 (Core)"
[2025-06-06 18:46:16] ID="centos"
[2025-06-06 18:46:16] ID_LIKE="rhel fedora"
[2025-06-06 18:46:16] VERSION_ID="7"
[2025-06-06 18:46:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 18:46:16] ANSI_COLOR="0;31"
[2025-06-06 18:46:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 18:46:16] HOME_URL="https://www.centos.org/"
[2025-06-06 18:46:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 18:46:16] 
[2025-06-06 18:46:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 18:46:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 18:46:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 18:46:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 18:46:16] 
[2025-06-06 18:46:16] 2025-06-06 16:45:57,210 | INFO     | **************************************
[2025-06-06 18:46:16] 2025-06-06 16:45:57,713 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-06-06 18:46:16] 2025-06-06 16:45:57,724 | INFO     | sufficient remaining disk space (707086254080 B)
[2025-06-06 18:46:16] 2025-06-06 16:45:57,724 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 18:46:16] 2025-06-06 16:45:57,724 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 18:46:16] 2025-06-06 16:45:57,724 | INFO     | update_server=False
[2025-06-06 18:46:16] 2025-06-06 16:45:57,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 18:46:16] 2025-06-06 16:45:57,724 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:46:16] 2025-06-06 16:45:57,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 18:46:16] 2025-06-06 16:45:57,945 | INFO     | all job control threads have been joined
[2025-06-06 18:46:16] 2025-06-06 16:45:58,061 | INFO     | all data control threads have been joined
[2025-06-06 18:46:16] 2025-06-06 16:45:58,380 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 18:46:16] 2025-06-06 16:45:58,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 18:46:16] 2025-06-06 16:45:58,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 18:46:16] 2025-06-06 16:45:58,548 | INFO     | all payload control threads have been joined
[2025-06-06 18:46:16] 2025-06-06 16:45:58,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:46:16] 2025-06-06 16:45:58,649 | INFO     | aborting loop
[2025-06-06 18:46:16] 2025-06-06 16:45:58,730 | INFO     | [job] retrieve thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:58,730 | INFO     | [job] queue monitor thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:58,732 | INFO     | [payload] failed_post thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:58,951 | INFO     | [job] control thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,067 | INFO     | [data] control thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 18:46:16] 2025-06-06 16:45:59,553 | INFO     | [payload] control thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,562 | INFO     | [payload] validate_post thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,600 | INFO     | [job] validate thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,648 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,654 | INFO     | [job] job monitor thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,655 | INFO     | [data] copytool_in thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,823 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:45:59,950 | INFO     | [data] copytool_out thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:46:00,215 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:46:03,117 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:46:08,120 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-06-06 18:46:16] 2025-06-06 16:46:08,193 | INFO     | job.realtimelogging is not enabled
[2025-06-06 18:46:16] 2025-06-06 16:46:09,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 18:46:16] 2025-06-06 16:46:10,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22842215618368)>', '<ExcThread(monitor, started 22841640609536)>']
[2025-06-06 18:46:16] 2025-06-06 16:46:11,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 18:46:16] 2025-06-06 16:46:11,443 | INFO     | [monitor] control thread has ended
[2025-06-06 18:46:16] 2025-06-06 16:46:15,947 | INFO     | all workflow threads have been joined
[2025-06-06 18:46:16] 2025-06-06 16:46:15,947 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 18:46:16] 2025-06-06 16:46:15,947 | INFO     | traces error code: 0
[2025-06-06 18:46:16] 2025-06-06 16:46:15,947 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 18:46:16] 2025-06-06 16:46:16,039 [wrapper] ==== pilot stdout END ====
[2025-06-06 18:46:16] 2025-06-06 16:46:16,041 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 18:46:16] 2025-06-06 16:46:16,043 [wrapper] pilotpid: 160804
[2025-06-06 18:46:16] 2025-06-06 16:46:16,045 [wrapper] Pilot exit status: 0
[2025-06-06 18:46:16] 2025-06-06 16:46:16,051 [wrapper] pandaids: 6677378685
[2025-06-06 18:46:16] 2025-06-06 16:46:16,084 [wrapper] cleanup supervisor_pilot  270714 160805
[2025-06-06 18:46:16] 2025-06-06 16:46:16,087 [wrapper] Test setup, not cleaning
[2025-06-06 18:46:16] 2025-06-06 16:46:16,089 [wrapper] apfmon messages muted
[2025-06-06 18:46:16] 2025-06-06 16:46:16,090 [wrapper] ==== wrapper stdout END ====
[2025-06-06 18:46:16] 2025-06-06 16:46:16,092 [wrapper] ==== wrapper stderr END ====
[2025-06-06 18:46:16]  *** Error codes and diagnostics ***
[2025-06-06 18:46:16]     "exeErrorCode": 0,
[2025-06-06 18:46:16]     "exeErrorDiag": "",
[2025-06-06 18:46:16]     "pilotErrorCode": 0,
[2025-06-06 18:46:16]     "pilotErrorDiag": "",
[2025-06-06 18:46:16]  *** Listing of results directory ***
[2025-06-06 18:46:16] total 390300
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-06 18:46:16] -rwx------ 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc       100 Jun  6 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 18:46:16] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 17:15 run_atlas
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc       105 Jun  6 17:15 job.xml
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc      6636 Jun  6 17:16 init_data.xml
[2025-06-06 18:46:16] -rw-r--r-- 2 boinc boinc 215745245 Jun  6 17:16 EVNT.45006593._000056.pool.root.1
[2025-06-06 18:46:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 17:16 start_atlas.sh
[2025-06-06 18:46:16] drwxrwx--x 2 boinc boinc      4096 Jun  6 17:16 shared
[2025-06-06 18:46:16] -rw-r--r-- 2 boinc boinc    508874 Jun  6 17:16 input.tar.gz
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc         0 Jun  6 17:16 boinc_lockfile
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc      2521 Jun  6 17:16 pandaJob.out
[2025-06-06 18:46:16] -rw------- 1 boinc boinc    985728 Jun  6 17:16 agis_schedconf.cvmfs.json
[2025-06-06 18:46:16] -rw------- 1 boinc boinc   1598969 Jun  6 17:16 agis_ddmendpoints.agis.ALL.json
[2025-06-06 18:46:16] drwx------ 4 boinc boinc      4096 Jun  6 17:16 pilot3
[2025-06-06 18:46:16] -rw------- 1 boinc boinc        95 Jun  6 18:45 pilot_heartbeat.json
[2025-06-06 18:46:16] -rw------- 1 boinc boinc 178508143 Jun  6 18:45 HITS.45006595._001392.pool.root.1
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc       529 Jun  6 18:45 boinc_task_state.xml
[2025-06-06 18:46:16] -rw------- 1 boinc boinc      1033 Jun  6 18:45 memory_monitor_summary.json
[2025-06-06 18:46:16] -rw------- 1 boinc boinc    255219 Jun  6 18:45 log.45006595._001392.job.log.tgz.1
[2025-06-06 18:46:16] -rw------- 1 boinc boinc      7724 Jun  6 18:45 heartbeat.json
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc      8192 Jun  6 18:46 boinc_mmap_file
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc        27 Jun  6 18:46 wrapper_checkpoint.txt
[2025-06-06 18:46:16] -rw------- 1 boinc boinc      4435 Jun  6 18:46 pilotlog.txt
[2025-06-06 18:46:16] -rw------- 1 boinc boinc    535860 Jun  6 18:46 log.45006595._001392.job.log.1
[2025-06-06 18:46:16] -rw------- 1 boinc boinc       357 Jun  6 18:46 output.list
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc       620 Jun  6 18:46 runtime_log
[2025-06-06 18:46:16] -rw------- 1 boinc boinc    808960 Jun  6 18:46 result.tar.gz
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc      9025 Jun  6 18:46 runtime_log.err
[2025-06-06 18:46:16] -rw------- 1 boinc boinc       660 Jun  6 18:46 L9jMDmubMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmObVKDmCV3Tym.diag
[2025-06-06 18:46:16] -rw-r--r-- 1 boinc boinc     22512 Jun  6 18:46 stderr.txt
[2025-06-06 18:46:16] HITS file was successfully produced:
[2025-06-06 18:46:16] -rw------- 1 boinc boinc 178508143 Jun  6 18:45 shared/HITS.pool.root.1
[2025-06-06 18:46:16]  *** Contents of shared directory: ***
[2025-06-06 18:46:16] total 386332
[2025-06-06 18:46:16] -rw-r--r-- 2 boinc boinc 215745245 Jun  6 17:16 ATLAS.root_0
[2025-06-06 18:46:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 17:16 start_atlas.sh
[2025-06-06 18:46:16] -rw-r--r-- 2 boinc boinc    508874 Jun  6 17:16 input.tar.gz
[2025-06-06 18:46:16] -rw------- 1 boinc boinc 178508143 Jun  6 18:45 HITS.pool.root.1
[2025-06-06 18:46:16] -rw------- 1 boinc boinc    808960 Jun  6 18:46 result.tar.gz
18:46:17 (157106): run_atlas exited; CPU time 20708.882581
18:46:17 (157106): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN